Wall clock time and date at job start Tue Mar 31 2020 11:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38256 * 119.99877 * 2 1 4 4 C 1.38211 * 119.99609 * 180.23064 * 3 2 1 5 5 C 1.38264 * 119.99918 * 359.81600 * 4 3 2 6 6 C 1.38206 * 120.00075 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99653 * 179.79829 * 2 1 3 8 8 C 1.50706 * 120.00315 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.46510 * 353.98165 * 8 7 2 10 10 C 1.52998 * 109.46975 * 113.98876 * 8 7 2 11 11 C 1.53005 * 109.46806 * 233.98614 * 8 7 2 12 12 C 1.50700 * 109.46535 * 174.99957 * 11 8 7 13 13 O 1.21283 * 120.00084 * 359.97438 * 12 11 8 14 14 N 1.34782 * 119.99783 * 179.97438 * 12 11 8 15 15 C 1.46495 * 119.99839 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47220 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47014 * 299.99954 * 16 15 14 18 18 C 1.52997 * 109.46710 * 59.99870 * 16 15 14 19 19 C 1.52991 * 109.47322 * 179.97438 * 16 15 14 20 20 C 1.50696 * 109.47284 * 180.02562 * 19 16 15 21 21 H 1.07999 * 119.99915 * 0.02562 * 20 19 16 22 22 C 1.37879 * 119.99917 * 180.02562 * 20 19 16 23 23 N 1.31509 * 120.00387 * 0.02562 * 22 20 19 24 24 Si 1.86811 * 119.99598 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47103 * 60.00020 * 24 22 20 26 26 H 1.48500 * 109.46868 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47223 * 299.99696 * 24 22 20 28 28 H 1.08999 * 109.46997 * 264.60143 * 1 2 3 29 29 H 1.09002 * 109.47021 * 24.60301 * 1 2 3 30 30 H 1.08997 * 109.46897 * 144.60025 * 1 2 3 31 31 H 1.07997 * 120.00324 * 0.07353 * 3 2 1 32 32 H 1.08003 * 120.00242 * 179.84390 * 4 3 2 33 33 H 1.08004 * 119.99734 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.99973 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.47104 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.46524 * 299.99601 * 10 8 7 37 37 H 1.08995 * 109.47508 * 59.99772 * 10 8 7 38 38 H 1.08993 * 109.47170 * 55.00466 * 11 8 7 39 39 H 1.08992 * 109.46966 * 294.99766 * 11 8 7 40 40 H 0.96990 * 119.99598 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.47352 * 299.99734 * 15 14 12 42 42 H 1.09003 * 109.47165 * 59.99811 * 15 14 12 43 43 H 1.09004 * 109.46501 * 59.99824 * 17 16 15 44 44 H 1.08999 * 109.46924 * 179.97438 * 17 16 15 45 45 H 1.08993 * 109.47156 * 299.99818 * 17 16 15 46 46 H 1.09001 * 109.47206 * 60.00523 * 18 16 15 47 47 H 1.09006 * 109.47075 * 179.97438 * 18 16 15 48 48 H 1.09000 * 109.47543 * 299.99885 * 18 16 15 49 49 H 1.08998 * 109.47644 * 300.00514 * 19 16 15 50 50 H 1.09004 * 109.47390 * 60.00300 * 19 16 15 51 51 H 0.97006 * 120.00224 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0002 -0.0058 6 6 3.5806 -1.1970 -0.0014 7 6 2.1981 -1.1970 0.0042 8 6 1.4445 -2.5021 0.0094 9 1 0.3779 -2.3053 0.1168 10 6 1.6969 -3.2419 -1.3058 11 6 1.9246 -3.3635 1.1793 12 6 1.0878 -4.6143 1.2585 13 8 0.1951 -4.7984 0.4584 14 7 1.3314 -5.5284 2.2186 15 6 0.5183 -6.7445 2.2953 16 6 0.9990 -7.6065 3.4644 17 6 2.4654 -7.9862 3.2490 18 6 0.8624 -6.8186 4.7688 19 6 0.1495 -8.8764 3.5449 20 6 0.6225 -9.7251 4.6968 21 1 1.4464 -9.3918 5.3104 22 6 0.0034 -10.9270 4.9674 23 7 -0.9995 -11.3330 4.2199 24 14 0.5894 -11.9787 6.3958 25 1 0.4558 -11.2134 7.6614 26 1 -0.2351 -13.2112 6.4738 27 1 2.0129 -12.3471 6.1879 28 1 -0.3633 -0.0967 1.0231 29 1 -0.3633 0.9344 -0.4279 30 1 -0.3633 -0.8377 -0.5953 31 1 1.6584 2.1326 0.0012 32 1 4.1205 2.1326 -0.0074 33 1 5.3517 -0.0002 -0.0091 34 1 4.1206 -2.1324 -0.0018 35 1 1.1516 -4.1856 -1.3023 36 1 1.3549 -2.6282 -2.1393 37 1 2.7636 -3.4386 -1.4132 38 1 1.8270 -2.8016 2.1082 39 1 2.9692 -3.6342 1.0264 40 1 2.0456 -5.3812 2.8582 41 1 -0.5264 -6.4741 2.4483 42 1 0.6160 -7.3061 1.3661 43 1 3.0703 -7.0812 3.1919 44 1 2.8080 -8.5999 4.0821 45 1 2.5627 -8.5475 2.3198 46 1 -0.1823 -6.5482 4.9222 47 1 1.2045 -7.4329 5.6018 48 1 1.4674 -5.9137 4.7117 49 1 -0.8951 -8.6056 3.6985 50 1 0.2463 -9.4379 2.6157 51 1 -1.4353 -12.1785 4.4105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345896756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:51 Heat of formation + Delta-G solvation = -50.702708 kcal Electronic energy + Delta-G solvation = -26383.693575 eV Core-core repulsion = 22860.408315 eV Total energy + Delta-G solvation = -3523.285260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32279 -39.35891 -37.23051 -35.13506 -33.59020 -32.95716 -32.10060 -30.13512 -28.31651 -27.07523 -27.04168 -26.52520 -25.80313 -23.87397 -22.82315 -21.72293 -20.47494 -19.77762 -18.25281 -17.19429 -16.41128 -16.23557 -16.00978 -15.36286 -15.26209 -14.95397 -14.51851 -14.23289 -14.06535 -13.97136 -13.35410 -13.32879 -13.15646 -13.07996 -12.77018 -12.67933 -12.56811 -12.32869 -12.12721 -12.05989 -11.80006 -11.49691 -11.31125 -11.15220 -11.01367 -10.88437 -10.85894 -10.65833 -10.63792 -10.40998 -10.27625 -9.88358 -9.66212 -9.16328 -9.00909 -8.93782 -8.76743 -8.69375 -8.36495 -6.00530 -4.01987 1.12984 1.16474 2.83889 3.31317 3.36817 3.37373 3.42575 3.56522 4.44176 4.49798 4.52048 4.70488 4.74122 4.88428 4.95479 5.04193 5.10795 5.26823 5.32933 5.34747 5.39659 5.47139 5.51062 5.53366 5.59246 5.61326 5.65026 5.74183 5.80336 5.92589 5.97241 6.05113 6.15956 6.21540 6.25595 6.28285 6.28902 6.35148 6.38546 6.50453 6.58572 6.61675 6.77387 6.80461 7.05320 7.06233 7.12091 7.62875 7.75441 7.76826 7.97929 8.39276 8.46564 9.02550 9.61055 11.10811 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029448 B = 0.002163 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.584361 B =12942.222948 C =13227.222974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.112 4.112 7 C -0.074 4.074 8 C -0.040 4.040 9 H 0.092 0.908 10 C -0.148 4.148 11 C -0.134 4.134 12 C 0.507 3.493 13 O -0.543 6.543 14 N -0.723 5.723 15 C 0.128 3.872 16 C -0.072 4.072 17 C -0.127 4.127 18 C -0.127 4.127 19 C 0.036 3.964 20 C -0.512 4.512 21 H 0.059 0.941 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.398 0.602 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.066 0.934 48 H 0.028 0.972 49 H 0.018 0.982 50 H 0.018 0.982 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.099 23.990 -7.852 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.130 4.130 7 C -0.074 4.074 8 C -0.059 4.059 9 H 0.110 0.890 10 C -0.205 4.205 11 C -0.174 4.174 12 C 0.293 3.707 13 O -0.421 6.421 14 N -0.374 5.374 15 C 0.005 3.995 16 C -0.073 4.073 17 C -0.184 4.184 18 C -0.184 4.184 19 C -0.001 4.001 20 C -0.550 4.550 21 H 0.077 0.923 22 C -0.145 4.145 23 N -0.534 5.534 24 Si 0.717 3.283 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.203 1.203 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.233 0.767 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.047 0.953 49 H 0.036 0.964 50 H 0.036 0.964 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.314 23.685 -8.446 26.485 hybrid contribution 0.733 -0.569 1.164 1.488 sum 9.047 23.116 -7.282 25.870 Atomic orbital electron populations 1.20880 0.91263 1.02865 1.02689 1.19814 0.96091 0.92565 0.99648 1.21020 0.94283 0.97346 1.01199 1.21103 0.94307 0.97991 1.00773 1.21113 0.99765 0.92554 1.00907 1.21013 0.93665 0.98115 1.00167 1.19789 0.93635 0.94319 0.99627 1.19958 1.00350 0.90594 0.94967 0.88972 1.21948 1.01446 1.01699 0.95416 1.21753 1.00485 0.94656 1.00546 1.20573 0.84592 0.84660 0.80876 1.90660 1.32642 1.78180 1.40638 1.46248 1.37064 1.21614 1.32493 1.21607 0.94385 0.83987 0.99489 1.20898 0.96819 0.97126 0.92443 1.21758 0.95128 0.99233 1.02289 1.21761 1.00542 0.97753 0.98368 1.19083 0.94227 0.89449 0.97371 1.21140 1.16542 1.03723 1.13595 0.92334 1.25019 0.95130 0.97886 0.96491 1.69953 1.22661 1.21752 1.38995 0.86707 0.78666 0.79868 0.83021 1.20337 1.21404 1.20332 0.91009 0.91701 0.90783 0.86263 0.86348 0.86262 0.86078 0.89980 0.92965 0.93234 0.89053 0.89042 0.76733 0.91902 0.91903 0.95258 0.91461 0.93388 0.93396 0.91456 0.95252 0.96375 0.96370 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.14 36.01 0.33 -0.65 16 2 C -0.08 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.02 9.68 -39.58 -0.38 -1.40 16 4 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 5 C -0.13 -1.03 10.05 -39.58 -0.40 -1.42 16 6 C -0.11 -0.99 8.79 -39.59 -0.35 -1.34 16 7 C -0.07 -0.71 4.78 -104.62 -0.50 -1.21 16 8 C -0.04 -0.42 1.94 -91.77 -0.18 -0.60 16 9 H 0.09 1.05 5.54 -51.93 -0.29 0.76 16 10 C -0.15 -1.62 8.80 37.16 0.33 -1.30 16 11 C -0.13 -1.36 4.83 -27.88 -0.13 -1.50 16 12 C 0.51 7.05 7.55 -10.98 -0.08 6.97 16 13 O -0.54 -9.47 13.97 5.55 0.08 -9.39 16 14 N -0.72 -10.06 4.96 -60.29 -0.30 -10.36 16 15 C 0.13 2.23 4.56 -4.04 -0.02 2.21 16 16 C -0.07 -1.35 0.54 -154.51 -0.08 -1.44 16 17 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 18 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 19 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 20 C -0.51 -13.50 7.65 -34.44 -0.26 -13.77 16 21 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 22 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 23 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 24 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.43 8.05 -51.93 -0.42 0.01 16 30 H 0.07 0.63 6.54 -51.93 -0.34 0.29 16 31 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 34 H 0.12 0.93 7.18 -52.49 -0.38 0.56 16 35 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.49 7.75 -51.93 -0.40 0.09 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.78 7.28 -51.93 -0.38 0.40 16 40 H 0.40 4.67 6.16 -40.82 -0.25 4.42 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 44 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.26 6.61 -51.93 -0.34 0.91 16 48 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -30.61 395.76 -9.57 -40.18 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.67 Total: 2.86 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.36 Total: -19.76 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.44 Total: -35.96 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.61 -9.57 -40.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345896756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.518 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds