Wall clock time and date at job start Tue Mar 31 2020 11:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38256 * 119.99877 * 2 1 4 4 C 1.38211 * 119.99609 * 180.23064 * 3 2 1 5 5 C 1.38264 * 119.99918 * 359.81600 * 4 3 2 6 6 C 1.38206 * 120.00075 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99653 * 179.79829 * 2 1 3 8 8 C 1.50706 * 120.00315 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.46510 * 353.98165 * 8 7 2 10 10 C 1.52998 * 109.46975 * 113.98876 * 8 7 2 11 11 C 1.53005 * 109.46806 * 233.98614 * 8 7 2 12 12 C 1.50700 * 109.46535 * 174.99957 * 11 8 7 13 13 O 1.21283 * 120.00084 * 359.97438 * 12 11 8 14 14 N 1.34782 * 119.99783 * 179.97438 * 12 11 8 15 15 C 1.46495 * 119.99839 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47220 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47014 * 299.99954 * 16 15 14 18 18 C 1.52997 * 109.46710 * 59.99870 * 16 15 14 19 19 C 1.52991 * 109.47322 * 179.97438 * 16 15 14 20 20 C 1.50696 * 109.47284 * 180.02562 * 19 16 15 21 21 H 1.07999 * 119.99915 * 0.02562 * 20 19 16 22 22 C 1.37879 * 119.99917 * 180.02562 * 20 19 16 23 23 N 1.31509 * 120.00387 * 0.02562 * 22 20 19 24 24 Si 1.86811 * 119.99598 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47103 * 60.00020 * 24 22 20 26 26 H 1.48500 * 109.46868 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47223 * 299.99696 * 24 22 20 28 28 H 1.08999 * 109.46997 * 264.60143 * 1 2 3 29 29 H 1.09002 * 109.47021 * 24.60301 * 1 2 3 30 30 H 1.08997 * 109.46897 * 144.60025 * 1 2 3 31 31 H 1.07997 * 120.00324 * 0.07353 * 3 2 1 32 32 H 1.08003 * 120.00242 * 179.84390 * 4 3 2 33 33 H 1.08004 * 119.99734 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.99973 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.47104 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.46524 * 299.99601 * 10 8 7 37 37 H 1.08995 * 109.47508 * 59.99772 * 10 8 7 38 38 H 1.08993 * 109.47170 * 55.00466 * 11 8 7 39 39 H 1.08992 * 109.46966 * 294.99766 * 11 8 7 40 40 H 0.96990 * 119.99598 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.47352 * 299.99734 * 15 14 12 42 42 H 1.09003 * 109.47165 * 59.99811 * 15 14 12 43 43 H 1.09004 * 109.46501 * 59.99824 * 17 16 15 44 44 H 1.08999 * 109.46924 * 179.97438 * 17 16 15 45 45 H 1.08993 * 109.47156 * 299.99818 * 17 16 15 46 46 H 1.09001 * 109.47206 * 60.00523 * 18 16 15 47 47 H 1.09006 * 109.47075 * 179.97438 * 18 16 15 48 48 H 1.09000 * 109.47543 * 299.99885 * 18 16 15 49 49 H 1.08998 * 109.47644 * 300.00514 * 19 16 15 50 50 H 1.09004 * 109.47390 * 60.00300 * 19 16 15 51 51 H 0.97006 * 120.00224 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0002 -0.0058 6 6 3.5806 -1.1970 -0.0014 7 6 2.1981 -1.1970 0.0042 8 6 1.4445 -2.5021 0.0094 9 1 0.3779 -2.3053 0.1168 10 6 1.6969 -3.2419 -1.3058 11 6 1.9246 -3.3635 1.1793 12 6 1.0878 -4.6143 1.2585 13 8 0.1951 -4.7984 0.4584 14 7 1.3314 -5.5284 2.2186 15 6 0.5183 -6.7445 2.2953 16 6 0.9990 -7.6065 3.4644 17 6 2.4654 -7.9862 3.2490 18 6 0.8624 -6.8186 4.7688 19 6 0.1495 -8.8764 3.5449 20 6 0.6225 -9.7251 4.6968 21 1 1.4464 -9.3918 5.3104 22 6 0.0034 -10.9270 4.9674 23 7 -0.9995 -11.3330 4.2199 24 14 0.5894 -11.9787 6.3958 25 1 0.4558 -11.2134 7.6614 26 1 -0.2351 -13.2112 6.4738 27 1 2.0129 -12.3471 6.1879 28 1 -0.3633 -0.0967 1.0231 29 1 -0.3633 0.9344 -0.4279 30 1 -0.3633 -0.8377 -0.5953 31 1 1.6584 2.1326 0.0012 32 1 4.1205 2.1326 -0.0074 33 1 5.3517 -0.0002 -0.0091 34 1 4.1206 -2.1324 -0.0018 35 1 1.1516 -4.1856 -1.3023 36 1 1.3549 -2.6282 -2.1393 37 1 2.7636 -3.4386 -1.4132 38 1 1.8270 -2.8016 2.1082 39 1 2.9692 -3.6342 1.0264 40 1 2.0456 -5.3812 2.8582 41 1 -0.5264 -6.4741 2.4483 42 1 0.6160 -7.3061 1.3661 43 1 3.0703 -7.0812 3.1919 44 1 2.8080 -8.5999 4.0821 45 1 2.5627 -8.5475 2.3198 46 1 -0.1823 -6.5482 4.9222 47 1 1.2045 -7.4329 5.6018 48 1 1.4674 -5.9137 4.7117 49 1 -0.8951 -8.6056 3.6985 50 1 0.2463 -9.4379 2.6157 51 1 -1.4353 -12.1785 4.4105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345896756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:50 Heat of formation + Delta-G solvation = -66.124201 kcal Electronic energy + Delta-G solvation = -26384.362301 eV Core-core repulsion = 22860.408315 eV Total energy + Delta-G solvation = -3523.953986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24105 -40.30376 -38.69436 -35.98439 -35.18701 -33.92384 -33.56386 -30.85995 -29.48375 -28.80431 -27.95116 -27.69676 -27.14185 -25.00323 -24.30748 -22.45709 -21.48039 -20.68410 -19.73630 -18.36706 -18.18057 -17.10568 -16.94515 -16.60989 -16.41121 -16.22090 -15.68129 -15.32091 -15.11921 -14.90364 -14.69001 -14.42941 -14.33018 -13.97597 -13.92801 -13.87335 -13.79136 -13.47852 -13.18301 -12.91574 -12.82020 -12.75335 -12.68063 -12.52621 -12.31993 -12.22099 -12.14904 -12.10734 -11.99586 -11.59567 -11.51797 -11.40191 -11.09524 -10.88277 -10.62694 -10.50516 -9.98445 -9.62960 -9.41021 -8.13583 -6.21559 0.49932 0.55275 1.42633 1.44767 1.51957 1.72861 2.29239 2.45756 2.90871 3.20563 3.67702 3.79703 3.98140 4.06551 4.08860 4.10154 4.17223 4.23880 4.25616 4.33052 4.49742 4.53547 4.63623 4.69211 4.71461 4.74211 4.79761 4.81601 4.85789 4.88153 4.96770 4.97857 5.05675 5.13188 5.13396 5.21461 5.30071 5.34989 5.37703 5.43970 5.50855 5.51720 5.55124 5.60950 5.67377 5.70060 5.81196 5.84593 5.90252 6.20107 6.30701 6.66343 6.93589 7.35817 7.46136 8.98631 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029448 B = 0.002163 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.584361 B =12942.222948 C =13227.222974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.128 4.128 5 C -0.131 4.131 6 C -0.118 4.118 7 C -0.085 4.085 8 C -0.036 4.036 9 H 0.076 0.924 10 C -0.144 4.144 11 C -0.123 4.123 12 C 0.505 3.495 13 O -0.582 6.582 14 N -0.712 5.712 15 C 0.143 3.857 16 C -0.064 4.064 17 C -0.121 4.121 18 C -0.122 4.122 19 C 0.039 3.961 20 C -0.513 4.513 21 H 0.073 0.927 22 C -0.007 4.007 23 N -0.939 5.939 24 Si 0.959 3.041 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.266 1.266 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.413 0.587 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.055 0.945 48 H 0.071 0.929 49 H -0.016 1.016 50 H -0.015 1.015 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.109 26.248 -6.630 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.146 4.146 5 C -0.149 4.149 6 C -0.136 4.136 7 C -0.085 4.085 8 C -0.055 4.055 9 H 0.094 0.906 10 C -0.201 4.201 11 C -0.163 4.163 12 C 0.294 3.706 13 O -0.463 6.463 14 N -0.365 5.365 15 C 0.018 3.982 16 C -0.065 4.065 17 C -0.179 4.179 18 C -0.179 4.179 19 C 0.002 3.998 20 C -0.551 4.551 21 H 0.091 0.909 22 C -0.204 4.204 23 N -0.580 5.580 24 Si 0.784 3.216 25 H -0.191 1.191 26 H -0.218 1.218 27 H -0.191 1.191 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.251 0.749 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.003 0.997 50 H 0.003 0.997 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.362 25.972 -7.204 29.249 hybrid contribution -0.228 -1.202 0.704 1.412 sum 11.134 24.769 -6.500 27.924 Atomic orbital electron populations 1.20871 0.91039 1.03062 1.02612 1.20009 0.96542 0.93005 1.00098 1.21269 0.94830 0.97637 1.00966 1.21427 0.94297 0.98985 0.99846 1.21410 1.00898 0.92323 1.00268 1.21200 0.93313 0.99084 1.00030 1.19718 0.94080 0.93722 1.00950 1.19848 0.99733 0.91226 0.94645 0.90560 1.21877 1.01783 1.00355 0.96072 1.21763 1.00779 0.92397 1.01355 1.21298 0.84244 0.85355 0.79747 1.90661 1.34519 1.79050 1.42054 1.46035 1.36961 1.20353 1.33128 1.21152 0.93950 0.85122 0.97954 1.20695 0.96882 0.94866 0.94022 1.21693 0.94128 1.00903 1.01146 1.21696 1.00669 0.98968 0.96556 1.18973 0.93556 0.91935 0.95362 1.21560 1.16278 1.03655 1.13653 0.90910 1.25973 0.95346 0.99670 0.99377 1.70117 1.24375 1.22296 1.41185 0.85587 0.78408 0.77786 0.79778 1.19135 1.21779 1.19101 0.90970 0.90461 0.91896 0.84800 0.84335 0.84316 0.84877 0.92751 0.93014 0.91905 0.87065 0.86455 0.74920 0.93919 0.93845 0.90959 0.92643 0.94523 0.94587 0.92628 0.91003 0.99739 0.99700 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.14 71.24 0.65 -1.21 16 2 C -0.10 -1.66 5.88 -19.86 -0.12 -1.78 16 3 C -0.13 -1.90 9.68 22.27 0.22 -1.69 16 4 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 5 C -0.13 -1.75 10.05 22.27 0.22 -1.52 16 6 C -0.12 -1.78 8.79 22.27 0.20 -1.58 16 7 C -0.08 -1.49 4.78 -19.86 -0.10 -1.58 16 8 C -0.04 -0.71 1.94 -11.54 -0.02 -0.73 16 9 H 0.08 1.75 5.54 -2.39 -0.01 1.74 16 10 C -0.14 -3.09 8.80 71.98 0.63 -2.46 16 11 C -0.12 -2.19 4.83 29.85 0.14 -2.05 16 12 C 0.51 13.51 7.55 87.66 0.66 14.17 16 13 O -0.58 -20.72 13.97 -3.04 -0.04 -20.76 16 14 N -0.71 -18.58 4.96 -463.05 -2.30 -20.87 16 15 C 0.14 5.02 4.56 86.38 0.39 5.41 16 16 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 17 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 18 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 19 C 0.04 2.00 4.04 29.84 0.12 2.12 16 20 C -0.51 -27.44 7.65 25.60 0.20 -27.25 16 21 H 0.07 3.62 5.68 -2.91 -0.02 3.60 16 22 C -0.01 -0.39 5.46 84.66 0.46 0.08 16 23 N -0.94 -57.24 13.29 21.45 0.28 -56.96 16 24 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 0.96 8.05 -2.39 -0.02 0.94 16 30 H 0.06 1.10 6.54 -2.39 -0.02 1.08 16 31 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 34 H 0.13 1.59 7.18 -2.91 -0.02 1.57 16 35 H 0.05 1.48 5.95 -2.39 -0.01 1.47 16 36 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.15 7.75 -2.39 -0.02 1.13 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.12 1.53 7.28 -2.39 -0.02 1.51 16 40 H 0.41 8.14 6.16 -92.72 -0.57 7.57 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.74 6.86 -2.38 -0.02 1.73 16 44 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 45 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.05 1.97 6.61 -2.38 -0.02 1.95 16 48 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 49 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 50 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 51 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -69.58 395.76 5.32 -64.25 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.33 Total: 19.59 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 5.02 Total: -30.77 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.01 Total: -77.83 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.04 Total: -20.76 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -69.58 5.32 -64.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345896756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.873 kcal (2) G-P(sol) polarization free energy of solvation -69.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds