Wall clock time and date at job start Tue Mar 31 2020 11:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38241 * 119.99437 * 2 1 4 4 C 1.38238 * 119.99768 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00117 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00037 * 0.02562 * 4 3 2 7 7 C 1.38235 * 119.99836 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99802 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46925 * 90.00320 * 8 7 6 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99697 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00141 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99875 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47037 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47415 * 300.00318 * 14 13 12 16 16 C 1.52997 * 109.46817 * 60.00445 * 14 13 12 17 17 C 1.52996 * 109.47346 * 180.02562 * 14 13 12 18 18 C 1.50702 * 109.47592 * 180.02562 * 17 14 13 19 19 H 1.07995 * 119.99266 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00217 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99909 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46946 * 59.99897 * 22 20 18 24 24 H 1.48496 * 109.46933 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46921 * 299.99580 * 22 20 18 26 26 C 1.38231 * 120.00255 * 0.25368 * 7 6 4 27 27 H 1.09000 * 109.47051 * 90.00050 * 1 2 3 28 28 H 1.09000 * 109.46623 * 209.99780 * 1 2 3 29 29 H 1.08997 * 109.47526 * 329.99572 * 1 2 3 30 30 H 1.08001 * 120.00379 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46946 * 270.02899 * 5 4 3 32 32 H 1.09003 * 109.47164 * 30.02317 * 5 4 3 33 33 H 1.08995 * 109.47693 * 150.02350 * 5 4 3 34 34 H 1.07997 * 119.99984 * 179.97438 * 6 4 3 35 35 H 1.09000 * 109.47318 * 209.99554 * 8 7 6 36 36 H 1.09000 * 109.47161 * 330.00185 * 8 7 6 37 37 H 1.09004 * 109.46930 * 299.99901 * 9 8 7 38 38 H 1.09004 * 109.47059 * 59.99503 * 9 8 7 39 39 H 0.96999 * 120.00043 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.47565 * 300.00629 * 13 12 10 41 41 H 1.09004 * 109.47374 * 60.00435 * 13 12 10 42 42 H 1.09002 * 109.47045 * 59.99931 * 15 14 13 43 43 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 44 44 H 1.09000 * 109.47140 * 300.00024 * 15 14 13 45 45 H 1.09000 * 109.47611 * 60.00257 * 16 14 13 46 46 H 1.09001 * 109.47289 * 179.97438 * 16 14 13 47 47 H 1.09002 * 109.47153 * 299.99769 * 16 14 13 48 48 H 1.09004 * 109.47108 * 300.00289 * 17 14 13 49 49 H 1.09004 * 109.47368 * 60.00188 * 17 14 13 50 50 H 0.97002 * 119.99804 * 179.97438 * 21 20 18 51 51 H 1.07997 * 120.00101 * 179.72736 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0002 -0.0016 7 6 3.5806 -1.1969 -0.0027 8 6 4.3342 -2.5020 -0.0044 9 6 4.5897 -2.9453 1.4375 10 6 5.3438 -4.2500 1.4359 11 8 5.6466 -4.7740 0.3849 12 7 5.6817 -4.8346 2.6023 13 6 6.4143 -6.1032 2.6006 14 6 6.6699 -6.5464 4.0426 15 6 7.4969 -5.4808 4.7647 16 6 5.3333 -6.7303 4.7640 17 6 7.4356 -7.8710 4.0409 18 6 7.6869 -8.3079 5.4612 19 1 7.3359 -7.7012 6.2827 20 6 8.3657 -9.4815 5.7116 21 7 8.7935 -10.2200 4.7109 22 14 8.6764 -10.0234 7.4720 23 1 7.3786 -10.2034 8.1709 24 1 9.4197 -11.3089 7.4703 25 1 9.4776 -8.9888 8.1742 26 6 2.1983 -1.1970 -0.0080 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6580 2.1326 0.0004 31 1 4.5147 2.8171 -1.0289 32 1 3.7452 3.2621 0.5131 33 1 5.2867 2.3723 0.5120 34 1 5.3517 0.0003 -0.0024 35 1 3.7450 -3.2612 -0.5188 36 1 5.2864 -2.3711 -0.5185 37 1 5.1789 -2.1861 1.9520 38 1 3.6374 -3.0762 1.9515 39 1 5.4392 -4.4157 3.4429 40 1 5.8251 -6.8624 2.0865 41 1 7.3664 -5.9723 2.0862 42 1 6.9517 -4.5369 4.7660 43 1 7.6794 -5.7968 5.7919 44 1 8.4491 -5.3497 4.2507 45 1 4.7442 -7.4895 4.2496 46 1 5.5153 -7.0465 5.7912 47 1 4.7882 -5.7864 4.7653 48 1 6.8468 -8.6304 3.5263 49 1 8.3879 -7.7396 3.5270 50 1 9.2714 -11.0455 4.8871 51 1 1.6584 -2.1324 -0.0133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345915669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:18 Heat of formation + Delta-G solvation = -76.115256 kcal Electronic energy + Delta-G solvation = -25645.493755 eV Core-core repulsion = 22121.106524 eV Total energy + Delta-G solvation = -3524.387231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.03239 -40.37761 -38.68281 -35.43090 -35.21110 -34.34381 -33.91895 -31.39025 -29.12128 -28.26204 -27.95868 -27.67302 -27.51915 -25.70568 -24.41065 -21.58060 -21.57716 -21.03892 -19.81451 -18.37165 -18.01374 -17.13355 -17.01835 -16.79379 -16.41063 -16.36320 -15.45021 -15.38435 -14.94929 -14.83654 -14.62407 -14.31083 -14.28887 -13.97807 -13.93395 -13.78446 -13.69424 -13.58666 -13.32280 -13.29297 -12.84585 -12.76028 -12.75279 -12.57320 -12.32563 -12.22343 -12.14085 -12.09065 -12.00455 -11.78356 -11.72161 -11.53235 -11.17142 -10.90011 -10.74326 -10.50774 -10.03723 -9.46987 -9.41308 -8.13825 -6.21922 0.45476 0.49003 1.42556 1.44803 1.52011 1.68786 2.26692 2.45409 2.83163 3.20248 3.67455 3.87603 3.95842 3.97786 4.01468 4.08199 4.21957 4.23195 4.28273 4.31791 4.50626 4.53937 4.67301 4.69817 4.70540 4.73088 4.77671 4.83036 4.83114 4.85357 4.87452 4.96927 5.08470 5.08898 5.11312 5.12648 5.16280 5.33486 5.40583 5.41405 5.48501 5.50255 5.54089 5.58316 5.69528 5.70012 5.78372 5.80412 5.89807 6.18214 6.30165 6.62651 6.93139 7.31266 7.45767 8.98388 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026680 B = 0.001925 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.223640 B =14542.236052 C =14619.949631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.136 4.136 4 C -0.089 4.089 5 C -0.114 4.114 6 C -0.136 4.136 7 C -0.078 4.078 8 C -0.059 4.059 9 C -0.121 4.121 10 C 0.505 3.495 11 O -0.593 6.593 12 N -0.711 5.711 13 C 0.141 3.859 14 C -0.065 4.065 15 C -0.122 4.122 16 C -0.122 4.122 17 C 0.039 3.961 18 C -0.514 4.514 19 H 0.073 0.927 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.960 3.040 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.266 1.266 26 C -0.136 4.136 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.414 0.586 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.055 0.945 47 H 0.072 0.928 48 H -0.015 1.015 49 H -0.015 1.015 50 H 0.259 0.741 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.632 27.060 -6.102 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.154 4.154 4 C -0.089 4.089 5 C -0.170 4.170 6 C -0.154 4.154 7 C -0.078 4.078 8 C -0.097 4.097 9 C -0.160 4.160 10 C 0.293 3.707 11 O -0.473 6.473 12 N -0.363 5.363 13 C 0.017 3.983 14 C -0.065 4.065 15 C -0.179 4.179 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.552 4.552 19 H 0.091 0.909 20 C -0.204 4.204 21 N -0.580 5.580 22 Si 0.785 3.215 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.191 1.191 26 C -0.154 4.154 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.252 0.748 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.003 0.997 49 H 0.003 0.997 50 H 0.068 0.932 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.330 26.536 -6.857 31.404 hybrid contribution 0.649 -1.123 0.744 1.496 sum -14.681 25.413 -6.113 29.978 Atomic orbital electron populations 1.20830 0.89744 1.03547 1.02904 1.20193 0.97233 0.92911 0.98546 1.21171 0.93684 0.98184 1.02316 1.20193 0.94226 0.95920 0.98548 1.20831 1.00066 0.93226 1.02904 1.21099 1.00198 0.91648 1.02430 1.19845 0.93918 0.94557 0.99523 1.20220 1.00139 0.93690 0.95679 1.21628 1.02115 0.93094 0.99190 1.21392 0.78970 0.87352 0.82997 1.90687 1.56844 1.66871 1.32948 1.46029 1.57404 1.23664 1.09236 1.21178 0.94961 0.85002 0.97200 1.20703 0.96921 0.96436 0.92446 1.21700 0.98627 0.97064 1.00528 1.21699 0.94846 1.00841 1.00533 1.18976 0.93319 0.91466 0.96066 1.21561 1.34492 1.05938 0.93199 0.90879 1.25983 0.96071 0.97208 1.01161 1.70122 1.39890 1.14890 1.33060 0.85571 0.78555 0.77320 0.80023 1.19117 1.21771 1.19103 1.21098 0.93536 0.98314 1.02429 0.90636 0.91072 0.90507 0.84660 0.90637 0.90508 0.91070 0.85588 0.91413 0.91416 0.86666 0.86658 0.74789 0.93855 0.93848 0.90971 0.92568 0.94530 0.94528 0.92567 0.90968 0.99711 0.99703 0.93198 0.85589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.45 16 2 C -0.09 -1.35 5.88 -19.87 -0.12 -1.47 16 3 C -0.14 -1.97 9.36 22.27 0.21 -1.76 16 4 C -0.09 -1.35 5.88 -19.87 -0.12 -1.47 16 5 C -0.11 -1.17 10.01 71.24 0.71 -0.45 16 6 C -0.14 -2.32 9.36 22.27 0.21 -2.12 16 7 C -0.08 -1.43 5.13 -19.86 -0.10 -1.53 16 8 C -0.06 -1.20 4.64 29.85 0.14 -1.06 16 9 C -0.12 -2.17 5.68 29.85 0.17 -2.00 16 10 C 0.50 13.90 7.83 87.66 0.69 14.58 16 11 O -0.59 -22.13 15.98 -3.03 -0.05 -22.18 16 12 N -0.71 -18.93 4.96 -463.07 -2.30 -21.23 16 13 C 0.14 5.04 4.56 86.38 0.39 5.43 16 14 C -0.06 -2.43 0.54 -52.18 -0.03 -2.45 16 15 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 16 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 17 C 0.04 2.01 4.04 29.85 0.12 2.13 16 18 C -0.51 -27.54 7.65 25.60 0.20 -27.35 16 19 H 0.07 3.64 5.68 -2.91 -0.02 3.63 16 20 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 21 N -0.94 -57.34 13.29 21.45 0.28 -57.05 16 22 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 C -0.14 -2.32 9.36 22.27 0.21 -2.12 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 29 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 30 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 33 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 34 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 36 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 37 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.41 8.30 6.16 -92.71 -0.57 7.73 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 43 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 47 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 48 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 49 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 50 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 51 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -70.90 407.70 5.30 -65.60 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.32 Total: 18.22 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 5.01 Total: -28.96 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -2.01 Total: -78.28 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.90 5.30 -65.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345915669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.518 kcal (2) G-P(sol) polarization free energy of solvation -70.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds