Wall clock time and date at job start Tue Mar 31 2020 11:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 120.00082 * 2 1 4 4 C 1.38228 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99983 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00163 * 359.97438 * 4 3 2 7 7 C 1.50698 * 120.00393 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47294 * 89.99654 * 7 6 4 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47059 * 180.02562 * 11 10 8 13 13 C 1.53008 * 109.46851 * 300.00042 * 12 11 10 14 14 C 1.53002 * 109.47274 * 59.99575 * 12 11 10 15 15 C 1.52996 * 109.47571 * 180.02562 * 12 11 10 16 16 C 1.50695 * 109.47381 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00167 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00453 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99589 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00712 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47021 * 59.99514 * 20 18 16 22 22 H 1.48496 * 109.47490 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46959 * 300.00409 * 20 18 16 24 24 C 1.38237 * 119.99938 * 0.27676 * 6 4 3 25 25 C 1.50700 * 120.00162 * 179.72779 * 24 6 4 26 26 C 1.38232 * 119.99638 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46915 * 90.00200 * 1 2 3 28 28 H 1.09000 * 109.47189 * 209.99952 * 1 2 3 29 29 H 1.08996 * 109.46972 * 330.00543 * 1 2 3 30 30 H 1.07992 * 119.99773 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.47047 * 269.97521 * 5 4 3 32 32 H 1.08992 * 109.47301 * 29.97107 * 5 4 3 33 33 H 1.09004 * 109.47311 * 149.97670 * 5 4 3 34 34 H 1.09001 * 109.46665 * 330.00035 * 7 6 4 35 35 H 1.09000 * 109.47722 * 210.00366 * 7 6 4 36 36 H 0.96994 * 119.99756 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.47366 * 299.99598 * 11 10 8 38 38 H 1.08992 * 109.47635 * 60.00246 * 11 10 8 39 39 H 1.09002 * 109.47288 * 59.99661 * 13 12 11 40 40 H 1.09004 * 109.46943 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.46630 * 299.99898 * 13 12 11 42 42 H 1.09004 * 109.46930 * 60.00379 * 14 12 11 43 43 H 1.09000 * 109.47312 * 180.02562 * 14 12 11 44 44 H 1.09002 * 109.47067 * 300.00462 * 14 12 11 45 45 H 1.09004 * 109.46785 * 299.99714 * 15 12 11 46 46 H 1.09001 * 109.47364 * 59.99212 * 15 12 11 47 47 H 0.96997 * 119.99752 * 180.02562 * 19 18 16 48 48 H 1.09001 * 109.47014 * 89.99702 * 25 24 6 49 49 H 1.08996 * 109.47283 * 209.99818 * 25 24 6 50 50 H 1.09004 * 109.46914 * 330.00169 * 25 24 6 51 51 H 1.07999 * 120.00384 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5021 0.0011 6 6 4.2717 -0.0001 0.0016 7 6 5.7787 -0.0002 0.0028 8 6 6.2800 0.0005 1.4240 9 8 5.4911 0.0006 2.3452 10 7 7.6048 0.0010 1.6713 11 6 8.0920 0.0011 3.0529 12 6 9.6221 0.0024 3.0541 13 6 10.1337 -1.2463 2.3329 14 6 10.1316 1.2522 2.3335 15 6 10.1310 0.0019 4.4969 16 6 11.6379 0.0038 4.4981 17 1 12.1787 0.0048 3.5633 18 6 12.3265 0.0042 5.6927 19 7 11.6680 0.0034 6.8311 20 14 14.1944 0.0058 5.6942 21 1 14.6889 1.2189 4.9946 22 1 14.6883 0.0054 7.0946 23 1 14.6910 -1.2061 4.9943 24 6 3.5805 -1.1972 -0.0036 25 6 4.3339 -2.5023 -0.0087 26 6 2.1981 -1.1972 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6583 2.1324 -0.0004 31 1 4.5165 2.8168 -1.0264 32 1 3.7447 3.2618 0.5144 33 1 5.2861 2.3718 0.5157 34 1 6.1424 0.8896 -0.5112 35 1 6.1424 -0.8904 -0.5104 36 1 8.2357 0.0014 0.9345 37 1 7.7280 0.8909 3.5665 38 1 7.7287 -0.8890 3.5663 39 1 9.7711 -1.2464 1.3050 40 1 11.2237 -1.2456 2.3342 41 1 9.7706 -2.1367 2.8463 42 1 9.7672 2.1418 2.8472 43 1 11.2217 1.2529 2.3340 44 1 9.7691 1.2521 1.3055 45 1 9.7665 0.8913 5.0111 46 1 9.7679 -0.8887 5.0100 47 1 12.1524 0.0041 7.6715 48 1 4.5152 -2.8212 1.0178 49 1 3.7451 -3.2598 -0.5258 50 1 5.2866 -2.3699 -0.5215 51 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345976725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:21 Heat of formation + Delta-G solvation = -51.804615 kcal Electronic energy + Delta-G solvation = -26687.672259 eV Core-core repulsion = 23164.339217 eV Total energy + Delta-G solvation = -3523.333042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.41310 -39.07505 -37.07194 -34.38806 -33.68977 -33.56481 -32.09926 -30.06119 -28.07614 -27.15128 -26.82451 -26.52364 -26.43891 -24.87034 -22.80219 -20.87900 -20.64117 -19.81831 -18.28024 -16.80240 -16.54055 -16.40038 -16.03635 -15.07329 -14.94363 -14.52990 -14.40837 -14.30199 -13.74289 -13.60536 -13.32180 -13.23552 -13.09082 -13.07342 -12.86872 -12.81641 -12.72093 -12.71143 -12.25246 -12.06136 -11.93050 -11.63417 -11.29950 -11.14797 -11.01156 -10.96313 -10.92136 -10.87837 -10.63841 -10.40670 -10.27498 -9.88142 -9.75420 -9.17872 -8.94380 -8.69424 -8.58346 -8.43674 -8.36242 -6.00291 -4.01787 1.25527 1.34083 2.86170 3.31348 3.36482 3.37023 3.39564 3.77166 4.44623 4.52059 4.62300 4.71726 4.82643 4.93776 5.07710 5.15513 5.23132 5.28111 5.32949 5.34966 5.38115 5.44244 5.49408 5.54081 5.57374 5.61279 5.62696 5.68256 5.74328 5.78557 5.80639 6.12025 6.15973 6.17125 6.21974 6.29582 6.38802 6.44044 6.49431 6.57459 6.61615 6.61950 6.77531 6.98349 7.05491 7.06433 7.12386 7.63266 7.75783 7.78146 7.98245 8.39573 8.48856 9.02812 9.61229 11.11106 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.028421 B = 0.002351 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.954581 B =11905.214418 C =12047.196331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.064 4.064 5 C -0.117 4.117 6 C -0.067 4.067 7 C -0.110 4.110 8 C 0.508 3.492 9 O -0.534 6.534 10 N -0.724 5.724 11 C 0.129 3.871 12 C -0.072 4.072 13 C -0.127 4.127 14 C -0.127 4.127 15 C 0.036 3.964 16 C -0.512 4.512 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.064 4.064 25 C -0.119 4.119 26 C -0.127 4.127 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.397 0.603 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.261 0.739 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.230 -0.024 -18.706 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.083 4.083 3 C -0.145 4.145 4 C -0.064 4.064 5 C -0.174 4.174 6 C -0.068 4.068 7 C -0.149 4.149 8 C 0.294 3.706 9 O -0.411 6.411 10 N -0.376 5.376 11 C 0.006 3.994 12 C -0.072 4.072 13 C -0.184 4.184 14 C -0.184 4.184 15 C -0.001 4.001 16 C -0.550 4.550 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.064 4.064 25 C -0.175 4.175 26 C -0.145 4.145 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.232 0.768 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.070 0.930 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.766 -0.024 -17.818 25.162 hybrid contribution 1.384 0.004 -0.099 1.388 sum -16.382 -0.020 -17.917 24.278 Atomic orbital electron populations 1.20765 0.91402 1.02682 1.02022 1.19827 0.95812 0.93142 0.99554 1.20786 0.93291 0.97419 1.03011 1.19654 0.93669 0.94622 0.98413 1.20829 1.00406 0.94173 1.01947 1.18924 0.93372 0.92479 1.01987 1.20770 0.93510 1.05010 0.95637 1.20414 0.82548 0.76824 0.90837 1.90721 1.55225 1.48918 1.46195 1.46225 1.06438 1.74916 1.10059 1.21596 0.95116 1.01685 0.80960 1.20899 0.90751 0.95044 1.00555 1.21764 1.02296 0.97312 0.97051 1.21761 1.02299 0.97304 0.97051 1.19085 0.95904 0.97463 0.87687 1.21138 0.91355 1.50419 0.92069 0.92324 1.25021 0.98165 0.95564 0.95791 1.69957 1.35407 1.50735 0.97273 0.86703 0.86105 0.78504 0.76930 1.20331 1.21408 1.20337 1.19653 0.93681 0.94633 0.98418 1.20871 0.99813 0.94038 1.02775 1.20782 0.93280 0.97417 1.03016 0.91391 0.91664 0.91665 0.86344 0.91172 0.91442 0.91428 0.88191 0.88002 0.76776 0.91964 0.91957 0.95234 0.91450 0.93399 0.93394 0.91452 0.95238 0.96383 0.96381 0.92978 0.90768 0.91633 0.91423 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.08 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.13 -1.42 9.36 -39.59 -0.37 -1.79 16 4 C -0.06 -0.76 5.88 -104.63 -0.62 -1.37 16 5 C -0.12 -1.18 9.19 36.00 0.33 -0.84 16 6 C -0.07 -0.83 4.37 -104.62 -0.46 -1.29 16 7 C -0.11 -1.19 4.75 -29.03 -0.14 -1.33 16 8 C 0.51 7.44 7.42 -10.98 -0.08 7.36 16 9 O -0.53 -10.18 16.03 5.56 0.09 -10.09 16 10 N -0.72 -10.22 4.96 -60.30 -0.30 -10.52 16 11 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 12 C -0.07 -1.35 0.54 -154.50 -0.08 -1.43 16 13 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 14 C -0.13 -2.18 8.05 37.16 0.30 -1.89 16 15 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 16 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 17 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.06 -0.76 5.88 -104.62 -0.62 -1.38 16 25 C -0.12 -1.18 9.60 36.01 0.35 -0.84 16 26 C -0.13 -1.42 9.36 -39.58 -0.37 -1.79 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.07 0.74 6.37 -51.93 -0.33 0.41 16 34 H 0.10 0.88 6.70 -51.93 -0.35 0.53 16 35 H 0.10 0.89 5.94 -51.93 -0.31 0.58 16 36 H 0.40 4.62 6.16 -40.82 -0.25 4.37 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 40 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 44 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 50 H 0.07 0.59 5.94 -51.93 -0.31 0.28 16 51 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 398.98 15.07 6.01 6.01 Total: -1.00 -32.10 398.98 -9.39 -41.49 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.71 Total: 2.45 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.20 Total: -19.78 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.44 Total: -36.20 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.10 -9.39 -41.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345976725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.313 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds