Wall clock time and date at job start Tue Mar 31 2020 11:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38249 * 119.99963 * 2 1 4 4 C 1.38214 * 119.99962 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00067 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00047 * 179.97438 * 5 4 3 7 7 C 1.38214 * 119.99869 * 0.02562 * 5 4 3 8 8 C 1.50698 * 119.99826 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47166 * 84.99665 * 8 7 5 10 10 O 1.21283 * 120.00363 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99988 * 179.97438 * 9 8 7 12 12 C 1.46493 * 119.99864 * 179.72721 * 11 9 8 13 13 C 1.50702 * 109.47427 * 89.99800 * 12 11 9 14 14 H 1.07999 * 119.99972 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99945 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00264 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99887 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46962 * 59.99982 * 17 15 13 19 19 H 1.48504 * 109.46839 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47142 * 300.00289 * 17 15 13 21 21 C 1.46494 * 119.99635 * 0.02562 * 11 9 8 22 22 C 1.53002 * 109.47325 * 90.00335 * 21 11 9 23 23 C 1.53000 * 109.47118 * 179.97438 * 22 21 11 24 24 C 1.52998 * 109.46797 * 174.99967 * 23 22 21 25 25 C 1.53001 * 109.46862 * 294.99476 * 23 22 21 26 26 C 1.38211 * 119.99918 * 180.28006 * 2 1 3 27 27 H 1.08999 * 109.47492 * 89.99994 * 1 2 3 28 28 H 1.09002 * 109.47267 * 209.99824 * 1 2 3 29 29 H 1.09001 * 109.46987 * 329.99540 * 1 2 3 30 30 H 1.07999 * 120.00400 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.00317 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47438 * 270.02453 * 6 5 4 33 33 H 1.09004 * 109.47434 * 30.02783 * 6 5 4 34 34 H 1.09003 * 109.47307 * 150.02310 * 6 5 4 35 35 H 1.08998 * 109.46890 * 324.99655 * 8 7 5 36 36 H 1.09002 * 109.46875 * 204.99457 * 8 7 5 37 37 H 1.09002 * 109.47192 * 209.99937 * 12 11 9 38 38 H 1.08996 * 109.47342 * 329.99648 * 12 11 9 39 39 H 0.96991 * 120.00123 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.47006 * 210.00121 * 21 11 9 41 41 H 1.09004 * 109.47665 * 329.99813 * 21 11 9 42 42 H 1.08998 * 109.46465 * 299.99693 * 22 21 11 43 43 H 1.08993 * 109.47021 * 59.99589 * 22 21 11 44 44 H 1.08995 * 109.47631 * 54.99674 * 23 22 21 45 45 H 1.09000 * 109.47235 * 59.99968 * 24 23 22 46 46 H 1.09005 * 109.46716 * 179.97438 * 24 23 22 47 47 H 1.08992 * 109.47068 * 299.99328 * 24 23 22 48 48 H 1.08996 * 109.47265 * 180.02562 * 25 23 22 49 49 H 1.09000 * 109.47570 * 300.00276 * 25 23 22 50 50 H 1.08998 * 109.46936 * 60.00363 * 25 23 22 51 51 H 1.08004 * 120.00346 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7786 -0.0001 -0.0017 7 6 3.5806 -1.1970 -0.0005 8 6 4.3341 -2.5021 -0.0011 9 6 4.6931 -2.8755 1.4140 10 8 4.3695 -2.1528 2.3326 11 7 5.3740 -4.0127 1.6589 12 6 5.7282 -4.3726 3.0340 13 6 4.6236 -5.2019 3.6367 14 1 3.7457 -5.4376 3.0535 15 6 4.7342 -5.6605 4.9322 16 7 5.8036 -5.3739 5.6422 17 14 3.3653 -6.6890 5.6791 18 1 3.1796 -7.9242 4.8758 19 1 3.7250 -7.0548 7.0727 20 1 2.1034 -5.9063 5.6821 21 6 5.7654 -4.8853 0.5492 22 6 7.1464 -4.4711 0.0372 23 6 7.5555 -5.3829 -1.1213 24 6 8.8778 -4.8921 -1.7141 25 6 7.7267 -6.8140 -0.6079 26 6 2.1980 -1.1969 -0.0059 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6583 2.1326 0.0004 31 1 4.1204 2.1326 -0.0010 32 1 6.1412 -0.0001 -1.0296 33 1 6.1424 0.8899 0.5119 34 1 6.1424 -0.8901 0.5119 35 1 5.2445 -2.3957 -0.5909 36 1 3.7089 -3.2824 -0.4353 37 1 6.6543 -4.9474 3.0321 38 1 5.8647 -3.4659 3.6233 39 1 5.8812 -5.6962 6.5537 40 1 5.8009 -5.9186 0.8947 41 1 5.0373 -4.7967 -0.2571 42 1 7.1108 -3.4379 -0.3082 43 1 7.8744 -4.5598 0.8435 44 1 6.7829 -5.3627 -1.8899 45 1 9.6503 -4.9124 -0.9455 46 1 9.1694 -5.5420 -2.5392 47 1 8.7558 -3.8727 -2.0799 48 1 8.0186 -7.4636 -1.4331 49 1 8.4993 -6.8343 0.1608 50 1 6.7847 -7.1636 -0.1855 51 1 1.6580 -2.1323 -0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349382898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:12 Heat of formation + Delta-G solvation = -63.463775 kcal Electronic energy + Delta-G solvation = -27319.641325 eV Core-core repulsion = 23795.802703 eV Total energy + Delta-G solvation = -3523.838621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25092 -39.95602 -37.94571 -36.08488 -35.09326 -34.64803 -33.25052 -30.67627 -30.12136 -29.50065 -28.07008 -27.92953 -25.66316 -24.94751 -24.35664 -22.98653 -21.26559 -20.81458 -19.72059 -18.61257 -17.91346 -17.29206 -16.99123 -16.66770 -16.30119 -16.00241 -15.64815 -15.42566 -15.06556 -14.68914 -14.65682 -14.36902 -14.14953 -14.05184 -13.91299 -13.70092 -13.59809 -13.50573 -13.27497 -13.10909 -12.94757 -12.86076 -12.74588 -12.65266 -12.60007 -12.32310 -12.26601 -12.11854 -11.85998 -11.80380 -11.73786 -11.56976 -11.47622 -11.36492 -10.64723 -10.62170 -9.63426 -9.38529 -9.22085 -8.22501 -6.37293 0.45534 0.52400 1.34188 1.38624 1.45811 1.87260 2.29753 2.44373 2.88318 3.06714 3.70445 3.82535 3.90778 3.94786 4.04845 4.07429 4.15253 4.19098 4.30885 4.34213 4.39124 4.51430 4.56949 4.61350 4.72105 4.75022 4.79488 4.84652 4.85610 4.86879 4.88006 4.91653 4.99078 5.04114 5.10405 5.12445 5.18386 5.18978 5.25134 5.27873 5.39157 5.40048 5.52839 5.56416 5.57483 5.60871 5.72122 5.78160 5.87458 6.07141 6.19726 6.70149 6.82693 7.28666 7.52935 8.84211 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007968 B = 0.004838 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.344560 B = 5785.542051 C = 8285.629840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.105 4.105 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.094 4.094 6 C -0.112 4.112 7 C -0.076 4.076 8 C -0.090 4.090 9 C 0.502 3.498 10 O -0.590 6.590 11 N -0.603 5.603 12 C 0.267 3.733 13 C -0.541 4.541 14 H 0.052 0.948 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.964 3.036 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.279 1.279 21 C 0.106 3.894 22 C -0.125 4.125 23 C -0.086 4.086 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.126 4.126 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.019 0.981 38 H -0.007 1.007 39 H 0.267 0.733 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.044 0.956 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.041 0.959 50 H 0.051 0.949 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 6.258 -20.444 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.144 4.144 5 C -0.094 4.094 6 C -0.168 4.168 7 C -0.076 4.076 8 C -0.129 4.129 9 C 0.291 3.709 10 O -0.470 6.470 11 N -0.333 5.333 12 C 0.145 3.855 13 C -0.580 4.580 14 H 0.070 0.930 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.789 3.211 18 H -0.183 1.183 19 H -0.203 1.203 20 H -0.205 1.205 21 C -0.016 4.016 22 C -0.164 4.164 23 C -0.105 4.105 24 C -0.201 4.201 25 C -0.210 4.210 26 C -0.144 4.144 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.037 0.963 38 H 0.011 0.989 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.060 0.940 50 H 0.070 0.930 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.524 6.571 -19.781 20.900 hybrid contribution -0.326 -0.655 1.376 1.558 sum -1.851 5.915 -18.406 19.421 Atomic orbital electron populations 1.20790 0.89507 1.03075 1.03168 1.20183 0.97456 0.92889 0.99946 1.21286 0.94251 0.98148 1.00839 1.21254 0.94698 0.97676 1.00798 1.19969 0.96801 0.92925 0.99681 1.20802 0.90693 1.02290 1.03032 1.19381 0.93817 0.93888 1.00512 1.20745 1.02838 0.96337 0.93009 1.21090 0.77545 0.80479 0.91737 1.90657 1.55142 1.52801 1.48425 1.48235 1.54614 1.21975 1.08486 1.18625 0.94774 0.93680 0.78395 1.21669 1.04738 1.32687 0.98867 0.93001 1.25839 0.98367 0.97595 0.97243 1.70046 1.29545 1.46781 1.10446 0.85520 0.78782 0.79109 0.77732 1.18333 1.20268 1.20466 1.21833 0.96937 0.94392 0.88475 1.22038 0.95928 1.00247 0.98169 1.21038 0.98809 0.94241 0.96438 1.21815 0.96197 1.01537 1.00594 1.21925 1.01486 0.96486 1.01082 1.21077 0.93558 0.98463 1.01298 0.89633 0.92078 0.90568 0.83868 0.84184 0.88681 0.91129 0.93711 0.85941 0.86625 0.96303 0.98913 0.92460 0.91014 0.88420 0.91246 0.93875 0.89233 0.93723 0.91426 0.92053 0.91254 0.94005 0.93024 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.01 71.24 0.71 -1.43 16 2 C -0.10 -2.76 5.88 -19.87 -0.12 -2.88 16 3 C -0.13 -3.13 9.70 22.27 0.22 -2.92 16 4 C -0.13 -3.27 9.70 22.27 0.22 -3.06 16 5 C -0.09 -2.75 5.88 -19.87 -0.12 -2.86 16 6 C -0.11 -2.84 9.22 71.23 0.66 -2.19 16 7 C -0.08 -2.37 4.37 -19.87 -0.09 -2.46 16 8 C -0.09 -2.69 3.70 29.10 0.11 -2.58 16 9 C 0.50 21.49 6.89 87.65 0.60 22.09 16 10 O -0.59 -31.87 15.62 -3.04 -0.05 -31.92 16 11 N -0.60 -26.00 2.46 -826.17 -2.03 -28.03 16 12 C 0.27 14.77 5.16 85.64 0.44 15.21 16 13 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 14 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 15 C 0.01 0.50 5.46 84.65 0.46 0.96 16 16 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 17 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 21 C 0.11 3.31 4.96 86.38 0.43 3.74 16 22 C -0.13 -3.26 5.01 30.60 0.15 -3.10 16 23 C -0.09 -1.67 2.92 -10.79 -0.03 -1.70 16 24 C -0.14 -2.43 9.19 71.98 0.66 -1.77 16 25 C -0.15 -3.20 8.95 71.98 0.64 -2.56 16 26 C -0.13 -3.80 9.34 22.27 0.21 -3.59 16 27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 29 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 30 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 31 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16 34 H 0.04 1.34 6.16 -2.39 -0.01 1.33 16 35 H 0.12 2.94 6.04 -2.39 -0.01 2.92 16 36 H 0.12 2.90 7.31 -2.39 -0.02 2.88 16 37 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 38 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 39 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.07 2.43 6.50 -2.39 -0.02 2.41 16 41 H 0.10 2.39 6.44 -2.38 -0.02 2.37 16 42 H 0.07 1.66 7.22 -2.39 -0.02 1.64 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.05 1.18 6.56 -2.39 -0.02 1.16 16 51 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -77.24 407.50 6.51 -70.73 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.88 Total: 21.22 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.40 Total: -22.77 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -1.74 Total: -85.08 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.05 Total: -31.92 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -77.24 6.51 -70.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349382898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.265 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds