Wall clock time and date at job start Tue Mar 31 2020 11:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 C 1.50701 * 109.47402 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99514 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99827 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99562 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47474 * 89.99909 * 13 12 10 15 15 H 1.08003 * 120.00056 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00238 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99859 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00068 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46838 * 90.00184 * 18 16 14 20 20 H 1.48498 * 109.47224 * 210.00100 * 18 16 14 21 21 H 1.48493 * 109.47117 * 330.00155 * 18 16 14 22 22 C 1.46503 * 120.00513 * 359.97438 * 12 10 9 23 23 C 1.53001 * 109.46626 * 90.00035 * 22 12 10 24 24 C 1.53002 * 109.46829 * 180.02562 * 23 22 12 25 25 C 1.52999 * 109.47074 * 175.00397 * 24 23 22 26 26 C 1.53011 * 109.47087 * 295.00155 * 24 23 22 27 27 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 28 28 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 29 29 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 30 30 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 32 32 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 34 34 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 35 35 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 36 36 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 37 37 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 38 38 H 1.09007 * 109.47068 * 209.99761 * 13 12 10 39 39 H 1.09000 * 109.47570 * 329.99283 * 13 12 10 40 40 H 0.96996 * 119.99796 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47175 * 210.00279 * 22 12 10 42 42 H 1.08995 * 109.46446 * 330.00478 * 22 12 10 43 43 H 1.08995 * 109.47542 * 300.00019 * 23 22 12 44 44 H 1.09003 * 109.47163 * 60.00379 * 23 22 12 45 45 H 1.08999 * 109.47168 * 54.99836 * 24 23 22 46 46 H 1.08998 * 109.47082 * 59.99864 * 25 24 23 47 47 H 1.09002 * 109.46828 * 179.97438 * 25 24 23 48 48 H 1.08996 * 109.47183 * 299.99800 * 25 24 23 49 49 H 1.08999 * 109.46856 * 299.99872 * 26 24 23 50 50 H 1.09000 * 109.46739 * 59.99539 * 26 24 23 51 51 H 1.08995 * 109.47033 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 6 0.3277 -4.1863 -1.4365 11 8 0.1032 -4.7568 -0.3900 12 7 -0.0961 -4.7196 -2.5993 13 6 -0.8295 -5.9878 -2.5992 14 6 -2.3064 -5.7140 -2.4775 15 1 -2.6631 -4.6970 -2.4070 16 6 -3.2024 -6.7617 -2.4564 17 7 -4.4913 -6.5227 -2.3497 18 14 -2.5857 -8.5207 -2.5791 19 1 -2.3182 -9.0476 -1.2168 20 1 -3.6153 -9.3611 -3.2416 21 1 -1.3334 -8.5517 -3.3765 22 6 0.1757 -4.0308 -3.8634 23 6 1.5149 -4.5097 -4.4274 24 6 1.7990 -3.7898 -5.7473 25 6 3.1926 -4.1744 -6.2482 26 6 0.7529 -4.1982 -6.7865 27 1 -0.3633 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1329 0.0001 32 1 5.3517 0.0002 0.0005 33 1 4.1207 -2.1321 0.0064 34 1 2.0693 -3.2822 0.4356 35 1 0.5336 -2.3956 0.5893 36 1 0.4571 -2.1013 -1.8716 37 1 1.9929 -2.9879 -2.0253 38 1 -0.6342 -6.5206 -3.5299 39 1 -0.5023 -6.5968 -1.7564 40 1 -5.1216 -7.2598 -2.3345 41 1 -0.6188 -4.2523 -4.5760 42 1 0.2183 -2.9557 -3.6893 43 1 2.3094 -4.2881 -3.7148 44 1 1.4723 -5.5849 -4.6014 45 1 1.7539 -2.7121 -5.5904 46 1 3.2377 -5.2521 -6.4051 47 1 3.3948 -3.6619 -7.1887 48 1 3.9379 -3.8835 -5.5080 49 1 0.7980 -5.2759 -6.9433 50 1 -0.2400 -3.9243 -6.4295 51 1 0.9555 -3.6857 -7.7268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349435403.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:10 Heat of formation + Delta-G solvation = -44.571394 kcal Electronic energy + Delta-G solvation = -27038.243039 eV Core-core repulsion = 23515.223653 eV Total energy + Delta-G solvation = -3523.019386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.85534 -39.03323 -36.85545 -34.67385 -34.06112 -32.58858 -32.38747 -30.07364 -29.16758 -27.60499 -27.10935 -26.89193 -24.55095 -23.24484 -22.23236 -21.71996 -20.41159 -19.92203 -18.27517 -16.90278 -16.75278 -16.10499 -15.93679 -15.58047 -15.10061 -14.85352 -14.57676 -14.10802 -14.02201 -13.74112 -13.69302 -13.24185 -13.07757 -12.78742 -12.72405 -12.59002 -12.33782 -12.23846 -12.19279 -12.02907 -11.81104 -11.66911 -11.55439 -11.24062 -11.23002 -10.94767 -10.88557 -10.74539 -10.72166 -10.56373 -10.46824 -10.33825 -10.11212 -9.52019 -9.03700 -8.81960 -8.57649 -8.55432 -7.67743 -6.07673 -4.05954 1.29854 1.33222 3.29571 3.35542 3.37464 3.38548 3.65419 3.87997 4.40539 4.69526 4.77011 4.86742 4.90457 4.93842 4.97622 5.00963 5.20716 5.22693 5.26109 5.27181 5.35518 5.44449 5.49117 5.59801 5.63624 5.65384 5.66348 5.73328 5.74019 5.77875 5.86485 5.87404 5.95392 5.99776 6.02844 6.12374 6.14261 6.20949 6.24070 6.36831 6.43718 6.45698 6.46552 6.49741 6.69309 6.73854 6.97127 6.97955 7.38227 7.63099 8.29245 8.48715 8.94575 9.02342 9.53113 11.05776 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.003865 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.278403 B = 7242.457240 C = 8933.039531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.114 4.114 7 C -0.076 4.076 8 C -0.068 4.068 9 C -0.133 4.133 10 C 0.507 3.493 11 O -0.542 6.542 12 N -0.593 5.593 13 C 0.216 3.784 14 C -0.526 4.526 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.266 1.266 22 C 0.111 3.889 23 C -0.134 4.134 24 C -0.094 4.094 25 C -0.145 4.145 26 C -0.152 4.152 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.028 0.972 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.062 0.938 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.271 13.324 -3.081 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.145 4.145 6 C -0.132 4.132 7 C -0.076 4.076 8 C -0.105 4.105 9 C -0.173 4.173 10 C 0.294 3.706 11 O -0.420 6.420 12 N -0.323 5.323 13 C 0.096 3.904 14 C -0.565 4.565 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.014 4.014 23 C -0.173 4.173 24 C -0.113 4.113 25 C -0.203 4.203 26 C -0.209 4.209 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.081 0.919 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.942 12.898 -2.523 21.442 hybrid contribution 0.194 -0.873 -0.178 0.912 sum 17.136 12.025 -2.701 21.108 Atomic orbital electron populations 1.20917 0.91082 1.03244 1.02715 1.19850 0.96189 0.92560 0.99328 1.21015 0.94239 0.97396 1.01254 1.21073 0.94315 0.97888 1.01096 1.21086 0.99623 0.92588 1.01205 1.21079 0.93653 0.98121 1.00306 1.19879 0.93640 0.94779 0.99324 1.20365 1.00746 0.93162 0.96255 1.21691 1.00976 0.96423 0.98195 1.20381 0.79766 0.86571 0.83916 1.90665 1.57511 1.62785 1.31011 1.47919 1.54745 1.24613 1.05065 1.19627 0.92377 0.81334 0.97097 1.21331 0.88899 0.95525 1.50743 0.90795 1.24852 0.94719 0.98907 0.94515 1.69899 1.01310 1.32042 1.50413 0.86867 0.78816 0.85187 0.78928 1.19933 1.21106 1.19090 1.21559 0.96844 0.96203 0.86747 1.22124 0.97890 1.01136 0.96105 1.21059 0.95129 1.00076 0.94998 1.21828 0.96416 1.01448 1.00598 1.21919 0.99262 1.01541 0.98161 0.90976 0.91612 0.90659 0.86296 0.86452 0.86396 0.86105 0.90376 0.89861 0.89322 0.89523 0.95402 0.94697 0.92609 0.89625 0.91427 0.92133 0.91454 0.91242 0.92778 0.92953 0.92918 0.92624 0.91887 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.22 36.00 0.33 -1.03 16 2 C -0.08 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 4 C -0.13 -1.22 10.05 -39.59 -0.40 -1.61 16 5 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.11 -1.26 9.68 -39.58 -0.38 -1.65 16 7 C -0.08 -0.94 5.13 -104.63 -0.54 -1.48 16 8 C -0.07 -0.95 3.94 -27.88 -0.11 -1.06 16 9 C -0.13 -1.93 4.04 -27.88 -0.11 -2.04 16 10 C 0.51 10.12 7.67 -10.99 -0.08 10.03 16 11 O -0.54 -13.15 15.56 5.56 0.09 -13.07 16 12 N -0.59 -11.98 2.46 -175.06 -0.43 -12.41 16 13 C 0.22 5.27 4.23 -5.20 -0.02 5.25 16 14 C -0.53 -15.08 9.94 -34.44 -0.34 -15.43 16 15 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 18 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 19 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 22 C 0.11 1.72 4.97 -4.04 -0.02 1.70 16 23 C -0.13 -1.73 5.01 -26.73 -0.13 -1.86 16 24 C -0.09 -0.99 2.92 -90.61 -0.26 -1.25 16 25 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 26 C -0.15 -1.64 8.95 37.16 0.33 -1.31 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.93 5.43 -51.93 -0.28 0.64 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 35 H 0.08 1.28 6.94 -51.93 -0.36 0.92 16 36 H 0.09 1.20 6.17 -51.93 -0.32 0.88 16 37 H 0.09 1.09 7.18 -51.93 -0.37 0.72 16 38 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 39 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.09 1.42 6.50 -51.93 -0.34 1.08 16 42 H 0.07 0.91 6.44 -51.93 -0.33 0.58 16 43 H 0.06 0.75 7.22 -51.93 -0.37 0.38 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 51 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 402.49 15.07 6.07 6.07 Total: -1.00 -33.34 402.49 -10.02 -43.36 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.95 Total: 1.57 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -2.90 Total: -15.59 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.34 Total: -39.34 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.34 -10.02 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349435403.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.210 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds