Wall clock time and date at job start Tue Mar 31 2020 11:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.01730 * 2 1 4 4 C 1.54262 * 110.03526 * 121.39439 * 2 1 3 5 5 C 1.54886 * 104.19810 * 95.67430 * 4 2 1 6 6 C 1.54886 * 102.74875 * 37.94517 * 5 4 2 7 7 H 1.09000 * 110.49092 * 80.86753 * 6 5 4 8 8 N 1.46902 * 110.48448 * 203.38394 * 6 5 4 9 9 C 1.46905 * 110.99902 * 273.54190 * 8 6 5 10 10 C 1.50693 * 109.47456 * 180.02562 * 9 8 6 11 11 C 1.38289 * 119.97619 * 89.99568 * 10 9 8 12 12 C 1.38241 * 120.11292 * 179.97438 * 11 10 9 13 13 C 1.38161 * 120.05647 * 0.02562 * 12 11 10 14 14 C 1.38708 * 119.94442 * 0.02562 * 13 12 11 15 15 O 1.35905 * 120.05630 * 179.97438 * 14 13 12 16 16 C 1.42905 * 116.99842 * 0.02562 * 15 14 13 17 17 C 1.52999 * 109.46728 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46573 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00167 * 359.72054 * 18 17 16 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47405 * 60.00219 * 22 20 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47399 * 299.99813 * 22 20 18 26 26 C 1.38124 * 119.97012 * 270.30349 * 10 9 8 27 27 C 1.53879 * 110.03413 * 238.56132 * 2 1 3 28 28 H 1.08997 * 109.46840 * 300.06054 * 1 2 3 29 29 H 1.08999 * 109.47303 * 60.06188 * 1 2 3 30 30 H 1.09003 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47090 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47311 * 299.93593 * 3 2 1 33 33 H 1.09003 * 109.47208 * 59.94096 * 3 2 1 34 34 H 1.09005 * 110.48604 * 336.99484 * 4 2 1 35 35 H 1.09004 * 110.48759 * 214.35415 * 4 2 1 36 36 H 1.08995 * 110.75648 * 279.62591 * 5 4 2 37 37 H 1.09000 * 110.91764 * 156.33368 * 5 4 2 38 38 H 1.00904 * 111.00044 * 149.59437 * 8 6 5 39 39 H 1.08999 * 109.46991 * 59.99950 * 9 8 6 40 40 H 1.09011 * 109.46977 * 300.00422 * 9 8 6 41 41 H 1.08002 * 119.93962 * 0.02562 * 11 10 9 42 42 H 1.08004 * 119.97058 * 180.02562 * 12 11 10 43 43 H 1.08006 * 120.02685 * 179.97438 * 13 12 11 44 44 H 1.09000 * 109.47187 * 59.99782 * 16 15 14 45 45 H 1.09001 * 109.46558 * 299.99735 * 16 15 14 46 46 H 1.09000 * 109.47486 * 59.99938 * 17 16 15 47 47 H 1.09001 * 109.47362 * 299.99215 * 17 16 15 48 48 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 49 49 H 1.07997 * 120.02903 * 0.02562 * 26 10 9 50 50 H 1.08998 * 110.03210 * 121.42498 * 27 2 1 51 51 H 1.09000 * 110.03029 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7550 1.2371 5 6 2.3281 -2.1898 0.7200 6 6 2.8875 -1.9409 -0.7027 7 1 3.9446 -1.6791 -0.6567 8 7 2.6888 -3.1260 -1.5479 9 6 3.7986 -4.0758 -1.3918 10 6 3.5607 -5.2754 -2.2724 11 6 4.0389 -5.2859 -3.5699 12 6 3.8228 -6.3850 -4.3799 13 6 3.1275 -7.4760 -3.8949 14 6 2.6458 -7.4676 -2.5942 15 8 1.9612 -8.5393 -2.1149 16 6 1.7746 -9.6411 -3.0057 17 6 0.9879 -10.7440 -2.2947 18 6 0.7905 -11.9057 -3.2343 19 1 1.1827 -11.8598 -4.2395 20 6 0.1047 -13.0249 -2.8122 21 7 -0.3776 -13.0785 -1.5899 22 14 -0.1392 -14.4650 -3.9766 23 1 1.1841 -14.9922 -4.3961 24 1 -0.9029 -15.5355 -3.2866 25 1 -0.8935 -14.0121 -5.1730 26 6 2.8595 -6.3610 -1.7848 27 6 2.0571 -0.7540 -1.2335 28 1 -0.3633 0.5148 0.8894 29 1 -0.3634 0.5129 -0.8905 30 1 -0.3633 -1.0277 0.0005 31 1 3.1437 1.4272 0.0005 32 1 1.6962 1.9545 -0.8906 33 1 1.6944 1.9552 0.8895 34 1 1.3062 -0.7688 2.0258 35 1 2.9811 -0.2994 1.5967 36 1 1.4032 -2.7648 0.6763 37 1 3.0664 -2.6955 1.3423 38 1 2.5700 -2.8645 -2.5152 39 1 3.8602 -4.3949 -0.3514 40 1 4.7328 -3.5936 -1.6799 41 1 4.5830 -4.4341 -3.9507 42 1 4.1977 -6.3909 -5.3928 43 1 2.9585 -8.3344 -4.5283 44 1 2.7460 -10.0279 -3.3137 45 1 1.2209 -9.3086 -3.8837 46 1 0.0164 -10.3569 -1.9871 47 1 1.5412 -11.0767 -1.4164 48 1 -0.8603 -13.8657 -1.2931 49 1 2.4815 -6.3502 -0.7732 50 1 2.6866 -0.0960 -1.8325 51 1 1.2229 -1.1204 -1.8318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350661461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:31 Heat of formation + Delta-G solvation = -47.843234 kcal Electronic energy + Delta-G solvation = -25519.763511 eV Core-core repulsion = 21996.602247 eV Total energy + Delta-G solvation = -3523.161264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.89793 -39.47116 -37.47882 -35.45579 -33.36513 -32.06895 -30.86304 -30.34479 -29.15418 -28.32163 -27.62473 -25.42550 -24.69381 -24.00780 -22.32393 -21.60549 -20.49006 -20.15098 -19.07453 -17.59358 -16.28056 -16.19074 -15.77764 -15.66046 -15.48079 -15.28283 -15.00311 -14.52099 -14.26334 -14.09850 -13.87523 -13.74474 -13.38244 -13.00929 -12.92016 -12.65415 -12.42897 -12.30150 -12.13985 -11.85923 -11.75150 -11.41945 -11.33909 -11.23149 -11.18307 -11.06097 -10.85058 -10.83692 -10.78690 -10.70941 -10.65698 -10.40340 -9.84075 -9.64627 -9.30053 -8.76045 -8.56104 -8.43499 -7.82047 -6.09092 -4.13847 1.46854 1.69764 3.29375 3.33684 3.35451 3.76158 3.86964 4.16971 4.18663 4.33671 4.41774 4.54345 4.80675 4.90037 4.98363 5.01814 5.07883 5.13911 5.16029 5.24176 5.27083 5.29093 5.33030 5.37807 5.45348 5.48587 5.49992 5.58137 5.63761 5.67338 5.72486 5.75958 5.81968 5.88095 5.93994 6.02001 6.04215 6.05283 6.08477 6.18451 6.21517 6.56765 6.59269 6.69731 6.75330 6.84956 7.02310 7.19535 7.52235 7.65759 7.82834 8.08829 8.25143 8.91496 9.50266 11.02411 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020259 B = 0.001950 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.771055 B =14353.867799 C =15198.697435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.116 4.116 5 C -0.113 4.113 6 C 0.081 3.919 7 H 0.047 0.953 8 N -0.676 5.676 9 C 0.103 3.897 10 C -0.051 4.051 11 C -0.167 4.167 12 C -0.081 4.081 13 C -0.211 4.211 14 C 0.145 3.855 15 O -0.315 6.315 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.138 4.138 27 C -0.117 4.117 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.342 0.658 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.264 0.736 49 H 0.128 0.872 50 H 0.062 0.938 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.145 28.292 1.374 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.197 4.197 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.028 4.028 7 H 0.064 0.936 8 N -0.307 5.307 9 C -0.025 4.025 10 C -0.052 4.052 11 C -0.186 4.186 12 C -0.099 4.099 13 C -0.230 4.230 14 C 0.098 3.902 15 O -0.228 6.228 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.157 4.157 27 C -0.155 4.155 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.161 0.839 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.146 0.854 50 H 0.080 0.920 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.546 27.814 2.151 28.900 hybrid contribution 0.604 -0.516 -1.407 1.616 sum 8.150 27.298 0.744 28.498 Atomic orbital electron populations 1.21909 0.94147 1.02140 1.01386 1.21097 0.95759 0.94908 0.94977 1.21930 1.00656 0.95500 1.01592 1.22475 1.00681 0.95403 0.96824 1.22519 1.01715 0.96292 0.94633 1.22405 0.97358 0.89043 0.94029 0.93554 1.60591 1.43593 1.13924 1.12584 1.20870 0.91654 0.90632 0.99377 1.19394 0.97191 0.94421 0.94164 1.20760 1.04687 0.99076 0.94079 1.20833 0.97061 0.92858 0.99135 1.21388 1.04614 1.01041 0.95994 1.19208 0.90907 0.88147 0.91977 1.86180 1.68927 1.24835 1.42899 1.23324 0.99931 0.84839 0.92775 1.19122 0.95383 0.90183 0.96496 1.20937 1.36438 1.00432 0.98744 0.92429 1.24991 0.95302 0.98592 0.95307 1.69966 1.36471 1.29517 1.16764 0.86544 0.78345 0.81692 0.80759 1.20106 1.21111 1.20110 1.20260 1.02899 0.91944 1.00627 1.22443 0.99831 0.95878 0.97362 0.92854 0.92847 0.92122 0.92763 0.92802 0.92721 0.91469 0.91787 0.90237 0.92019 0.83916 0.90097 0.94475 0.86870 0.86281 0.85300 0.93175 0.93165 0.95382 0.95386 0.92651 0.85396 0.91972 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.14 37.16 0.30 -0.66 16 2 C -0.07 -0.46 0.94 -153.39 -0.14 -0.60 16 3 C -0.14 -0.82 8.16 37.16 0.30 -0.52 16 4 C -0.12 -0.82 5.90 -25.08 -0.15 -0.97 16 5 C -0.11 -0.96 6.50 -24.74 -0.16 -1.12 16 6 C 0.08 0.67 3.17 -66.05 -0.21 0.46 16 7 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 8 N -0.68 -6.54 6.29 -106.23 -0.67 -7.21 16 9 C 0.10 1.05 5.65 -4.98 -0.03 1.02 16 10 C -0.05 -0.65 5.39 -104.65 -0.56 -1.22 16 11 C -0.17 -2.02 9.70 -39.56 -0.38 -2.41 16 12 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 13 C -0.21 -3.36 9.04 -39.44 -0.36 -3.72 16 14 C 0.14 2.58 6.69 -39.22 -0.26 2.32 16 15 O -0.32 -6.65 10.14 -19.44 -0.20 -6.85 16 16 C 0.07 1.43 4.68 37.16 0.17 1.60 16 17 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 18 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 22 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.14 -2.15 9.64 -39.43 -0.38 -2.53 16 27 C -0.12 -0.85 5.60 -25.61 -0.14 -1.00 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 35 H 0.06 0.42 7.85 -51.93 -0.41 0.02 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.34 3.14 8.41 -39.29 -0.33 2.81 16 39 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.04 0.34 8.02 -51.92 -0.42 -0.08 16 41 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 43 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 44 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 45 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 50 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 51 H 0.08 0.62 7.52 -51.93 -0.39 0.23 16 LS Contribution 406.24 15.07 6.12 6.12 Total: -1.00 -29.84 406.24 -11.33 -41.17 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -9.34 Total: 0.07 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.96 Total: -23.79 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.07 Total: -33.09 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.20 Total: -6.85 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.84 -11.33 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350661461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.672 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds