Wall clock time and date at job start Tue Mar 31 2020 11:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38288 * 119.97131 * 2 1 4 4 C 1.38243 * 120.11140 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.05274 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.02387 * 179.97438 * 5 4 3 7 7 C 1.38704 * 119.94947 * 359.97438 * 5 4 3 8 8 O 1.35892 * 120.05932 * 180.02562 * 7 5 4 9 9 C 1.42906 * 117.00380 * 178.36562 * 8 7 5 10 10 C 1.53116 * 109.52555 * 203.85783 * 9 8 7 11 11 C 1.53036 * 109.28118 * 182.37372 * 10 9 8 12 12 N 1.46855 * 109.51185 * 59.18166 * 11 10 9 13 13 C 1.46902 * 110.99737 * 174.15821 * 12 11 10 14 14 H 1.09005 * 109.46646 * 312.62557 * 13 12 11 15 15 C 1.52990 * 109.47101 * 72.62549 * 13 12 11 16 16 C 1.53000 * 109.46748 * 192.62950 * 13 12 11 17 17 C 1.50702 * 109.46991 * 64.22232 * 16 13 12 18 18 H 1.07999 * 120.00473 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99848 * 179.97438 * 17 16 13 20 20 N 1.31521 * 119.99624 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00338 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47163 * 89.99970 * 21 19 17 23 23 H 1.48501 * 109.47567 * 210.00035 * 21 19 17 24 24 H 1.48505 * 109.47115 * 330.00186 * 21 19 17 25 25 C 1.46848 * 111.19867 * 298.24408 * 12 11 10 26 26 C 1.53039 * 109.51572 * 61.75864 * 25 12 11 27 27 C 1.38122 * 119.96946 * 180.25232 * 2 1 3 28 28 H 1.08998 * 109.46573 * 90.00157 * 1 2 3 29 29 H 1.09005 * 109.46861 * 209.99688 * 1 2 3 30 30 H 1.08994 * 109.47200 * 329.99741 * 1 2 3 31 31 H 1.07998 * 119.94230 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.97016 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46633 * 270.02351 * 6 5 4 34 34 H 1.08999 * 109.47156 * 30.01783 * 6 5 4 35 35 H 1.09002 * 109.47327 * 150.02624 * 6 5 4 36 36 H 1.09004 * 109.51980 * 323.97986 * 9 8 7 37 37 H 1.09002 * 109.50255 * 62.42802 * 10 9 8 38 38 H 1.09001 * 109.53108 * 302.33768 * 10 9 8 39 39 H 1.09001 * 109.46215 * 179.19227 * 11 10 9 40 40 H 1.09002 * 109.46119 * 299.17261 * 11 10 9 41 41 H 1.09005 * 109.47364 * 60.00447 * 15 13 12 42 42 H 1.09007 * 109.47107 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.47706 * 299.99798 * 15 13 12 44 44 H 1.09004 * 109.46814 * 184.22101 * 16 13 12 45 45 H 1.09001 * 109.47040 * 304.21875 * 16 13 12 46 46 H 0.96999 * 119.99653 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.46664 * 301.74267 * 25 12 11 48 48 H 1.08995 * 109.45324 * 181.76435 * 25 12 11 49 49 H 1.09003 * 109.50237 * 180.87967 * 26 25 12 50 50 H 1.08997 * 109.50214 * 60.75746 * 26 25 12 51 51 H 1.07996 * 120.03463 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 -0.0005 6 6 5.7822 0.0115 -0.0017 7 6 3.5847 -1.1958 0.0005 8 8 4.2658 -2.3717 0.0011 9 6 3.4898 -3.5711 0.0385 10 6 4.3343 -4.7092 0.6183 11 6 3.5180 -6.0036 0.6009 12 7 3.1237 -6.3163 -0.7787 13 6 2.4575 -7.6235 -0.8522 14 1 3.0403 -8.3599 -0.2988 15 6 1.0582 -7.5178 -0.2428 16 6 2.3453 -8.0570 -2.3152 17 6 3.7250 -8.2616 -2.8858 18 1 4.5950 -8.0983 -2.2670 19 6 3.8768 -8.6572 -4.1979 20 7 2.8173 -8.8565 -4.9513 21 14 5.5869 -8.9101 -4.9054 22 1 6.0076 -10.3182 -4.6923 23 1 5.5696 -8.6135 -6.3604 24 1 6.5433 -7.9996 -4.2260 25 6 2.2725 -5.2597 -1.3402 26 6 3.0516 -3.9431 -1.3807 27 6 2.1970 -1.1965 -0.0053 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6565 2.1324 -0.0004 32 1 4.1176 2.1382 -0.0010 33 1 6.1447 0.0126 -1.0297 34 1 6.1433 0.9026 0.5117 35 1 6.1486 -0.8774 0.5118 36 1 2.6097 -3.4162 0.6627 37 1 4.6137 -4.4688 1.6441 38 1 5.2341 -4.8382 0.0168 39 1 4.1216 -6.8189 0.9999 40 1 2.6256 -5.8784 1.2142 41 1 0.4755 -6.7814 -0.7963 42 1 0.5637 -8.4876 -0.2978 43 1 1.1382 -7.2090 0.7994 44 1 1.7851 -8.9901 -2.3757 45 1 1.8275 -7.2849 -2.8843 46 1 2.9241 -9.1345 -5.8744 47 1 1.3860 -5.1382 -0.7176 48 1 1.9715 -5.5348 -2.3510 49 1 2.4144 -3.1554 -1.7830 50 1 3.9308 -4.0599 -2.0142 51 1 1.6571 -2.1318 -0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351650559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:42 Heat of formation + Delta-G solvation = -28.916169 kcal Electronic energy + Delta-G solvation = -27405.686617 eV Core-core repulsion = 23883.346093 eV Total energy + Delta-G solvation = -3522.340525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59977 -38.96112 -37.47137 -34.44819 -33.62559 -32.26885 -30.72260 -30.17061 -29.31738 -29.12254 -27.30510 -25.05832 -24.28578 -23.20165 -22.92484 -21.94981 -21.06795 -19.91082 -18.74854 -17.62838 -16.31357 -16.16829 -15.76033 -15.35596 -15.29269 -14.60403 -14.49238 -14.34545 -14.05706 -13.91253 -13.43007 -13.39151 -13.15183 -13.00365 -12.91239 -12.73110 -12.37968 -12.13771 -11.97355 -11.93581 -11.73850 -11.58125 -11.44462 -11.34828 -11.30140 -11.04886 -10.87061 -10.61517 -10.55635 -10.38779 -10.32538 -10.10626 -9.86856 -9.19343 -8.96843 -8.77215 -8.25369 -8.06388 -7.51754 -5.88316 -3.85901 1.20670 1.38409 3.20540 3.39711 3.46138 3.51461 3.62623 4.44538 4.57619 4.60141 4.68416 4.82407 4.88276 4.94716 5.02987 5.10323 5.15685 5.41715 5.42252 5.43282 5.44639 5.48802 5.54897 5.58925 5.61584 5.65043 5.67891 5.73711 5.76675 5.85547 5.89833 5.91820 5.97930 6.00793 6.15225 6.17344 6.24626 6.29930 6.37372 6.40860 6.49767 6.51559 6.57718 6.68005 6.77593 6.96462 7.47796 7.51600 7.65023 7.88137 7.99623 8.12677 8.58363 9.19968 9.75901 11.23691 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.003217 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.356615 B = 8701.606783 C = 9277.837691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.053 4.053 3 C -0.162 4.162 4 C -0.082 4.082 5 C -0.129 4.129 6 C -0.103 4.103 7 C 0.143 3.857 8 O -0.305 6.305 9 C 0.088 3.912 10 C -0.108 4.108 11 C 0.058 3.942 12 N -0.510 5.510 13 C 0.087 3.913 14 H 0.070 0.930 15 C -0.184 4.184 16 C 0.031 3.969 17 C -0.489 4.489 18 H 0.060 0.940 19 C 0.050 3.950 20 N -0.904 5.904 21 Si 0.888 3.112 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.274 1.274 25 C 0.061 3.939 26 C -0.138 4.138 27 C -0.208 4.208 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.025 0.975 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.038 0.962 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.257 0.743 47 H 0.024 0.976 48 H 0.092 0.908 49 H 0.064 0.936 50 H 0.085 0.915 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.085 18.219 13.130 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.180 4.180 4 C -0.100 4.100 5 C -0.130 4.130 6 C -0.160 4.160 7 C 0.097 3.903 8 O -0.218 6.218 9 C 0.032 3.968 10 C -0.146 4.146 11 C -0.071 4.071 12 N -0.233 5.233 13 C -0.021 4.021 14 H 0.088 0.912 15 C -0.243 4.243 16 C -0.006 4.006 17 C -0.528 4.528 18 H 0.079 0.921 19 C -0.149 4.149 20 N -0.545 5.545 21 Si 0.717 3.283 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.199 1.199 25 C -0.067 4.067 26 C -0.176 4.176 27 C -0.227 4.227 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.067 0.933 47 H 0.042 0.958 48 H 0.111 0.889 49 H 0.083 0.917 50 H 0.104 0.896 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.485 18.087 12.668 22.132 hybrid contribution -0.143 -0.166 -0.081 0.233 sum -1.627 17.921 12.586 21.960 Atomic orbital electron populations 1.20811 0.91196 1.02681 1.02523 1.19683 0.95898 0.92538 0.97216 1.20858 0.94081 0.97328 1.05775 1.20819 0.93961 0.96689 0.98507 1.19259 0.96517 0.90404 1.06773 1.20581 0.90633 1.02499 1.02271 1.18835 0.90271 0.86028 0.95200 1.86118 1.36007 1.12100 1.87625 1.22606 0.94098 0.82421 0.97690 1.21622 0.99808 0.92363 1.00792 1.22028 0.97746 0.96330 0.90987 1.62064 1.42554 1.02124 1.16595 1.21926 0.90290 0.89064 1.00799 0.91163 1.22529 1.00413 1.01964 0.99380 1.19185 0.97584 0.96011 0.87828 1.21161 0.92648 1.43079 0.95869 0.92133 1.25002 0.96287 0.96221 0.97379 1.69964 1.28445 1.48537 1.07590 0.86646 0.85338 0.78228 0.78085 1.21034 1.21587 1.19870 1.22013 0.93047 0.90113 1.01518 1.22155 1.02018 0.97381 0.96096 1.21203 0.93129 0.98966 1.09364 0.90930 0.91570 0.91509 0.86241 0.85694 0.91482 0.92049 0.91122 0.91674 0.91413 0.89721 0.90310 0.95670 0.92828 0.92460 0.94249 0.96361 0.96378 0.93346 0.95753 0.88945 0.91690 0.89617 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.05 -0.59 5.88 -104.64 -0.62 -1.20 16 3 C -0.16 -1.66 9.70 -39.56 -0.38 -2.05 16 4 C -0.08 -0.85 9.70 -39.60 -0.38 -1.24 16 5 C -0.13 -1.56 5.89 -104.47 -0.62 -2.18 16 6 C -0.10 -1.08 9.79 36.01 0.35 -0.72 16 7 C 0.14 1.92 6.57 -39.21 -0.26 1.66 16 8 O -0.31 -4.38 8.86 -19.40 -0.17 -4.55 16 9 C 0.09 1.21 2.18 -26.61 -0.06 1.15 16 10 C -0.11 -1.48 5.75 -26.65 -0.15 -1.63 16 11 C 0.06 0.85 5.17 -3.83 -0.02 0.83 16 12 N -0.51 -9.28 4.28 -226.68 -0.97 -10.25 16 13 C 0.09 1.71 2.25 -67.72 -0.15 1.56 16 14 H 0.07 1.40 7.94 -51.93 -0.41 0.99 16 15 C -0.18 -3.04 8.40 37.15 0.31 -2.73 16 16 C 0.03 0.77 4.40 -27.88 -0.12 0.65 16 17 C -0.49 -13.56 8.82 -34.44 -0.30 -13.86 16 18 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 19 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 20 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 21 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 25 C 0.06 1.04 4.48 -3.83 -0.02 1.02 16 26 C -0.14 -2.13 5.40 -26.65 -0.14 -2.27 16 27 C -0.21 -2.59 7.94 -39.43 -0.31 -2.91 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 36 H 0.07 0.84 6.20 -51.93 -0.32 0.52 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.14 7.99 -51.93 -0.41 0.73 16 40 H 0.03 0.35 6.97 -51.93 -0.36 -0.01 16 41 H 0.05 0.88 6.45 -51.93 -0.33 0.55 16 42 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 43 H 0.04 0.57 6.92 -51.93 -0.36 0.21 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.48 6.35 -51.93 -0.33 0.15 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.02 0.38 6.57 -51.93 -0.34 0.04 16 48 H 0.09 1.82 6.25 -51.93 -0.32 1.49 16 49 H 0.06 0.93 7.06 -51.93 -0.37 0.57 16 50 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 51 H 0.13 1.56 5.50 -52.49 -0.29 1.27 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -30.29 390.19 -11.01 -41.30 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.85 Total: 0.18 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -2.61 Total: -23.19 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.23 Total: -36.69 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.17 Total: -4.55 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.29 -11.01 -41.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351650559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.387 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds