Wall clock time and date at job start Tue Mar 31 2020 11:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38288 * 119.97131 * 2 1 4 4 C 1.38243 * 120.11140 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.05274 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.02387 * 179.97438 * 5 4 3 7 7 C 1.38704 * 119.94947 * 359.97438 * 5 4 3 8 8 O 1.35892 * 120.05932 * 180.02562 * 7 5 4 9 9 C 1.42906 * 117.00380 * 178.36562 * 8 7 5 10 10 C 1.53116 * 109.52555 * 203.85783 * 9 8 7 11 11 C 1.53036 * 109.28118 * 182.37372 * 10 9 8 12 12 N 1.46855 * 109.51185 * 59.18166 * 11 10 9 13 13 C 1.46902 * 110.99737 * 174.15821 * 12 11 10 14 14 H 1.09005 * 109.46646 * 312.62557 * 13 12 11 15 15 C 1.52990 * 109.47101 * 72.62549 * 13 12 11 16 16 C 1.53000 * 109.46748 * 192.62950 * 13 12 11 17 17 C 1.50702 * 109.46991 * 64.22232 * 16 13 12 18 18 H 1.07999 * 120.00473 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99848 * 179.97438 * 17 16 13 20 20 N 1.31521 * 119.99624 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00338 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47163 * 89.99970 * 21 19 17 23 23 H 1.48501 * 109.47567 * 210.00035 * 21 19 17 24 24 H 1.48505 * 109.47115 * 330.00186 * 21 19 17 25 25 C 1.46848 * 111.19867 * 298.24408 * 12 11 10 26 26 C 1.53039 * 109.51572 * 61.75864 * 25 12 11 27 27 C 1.38122 * 119.96946 * 180.25232 * 2 1 3 28 28 H 1.08998 * 109.46573 * 90.00157 * 1 2 3 29 29 H 1.09005 * 109.46861 * 209.99688 * 1 2 3 30 30 H 1.08994 * 109.47200 * 329.99741 * 1 2 3 31 31 H 1.07998 * 119.94230 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.97016 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46633 * 270.02351 * 6 5 4 34 34 H 1.08999 * 109.47156 * 30.01783 * 6 5 4 35 35 H 1.09002 * 109.47327 * 150.02624 * 6 5 4 36 36 H 1.09004 * 109.51980 * 323.97986 * 9 8 7 37 37 H 1.09002 * 109.50255 * 62.42802 * 10 9 8 38 38 H 1.09001 * 109.53108 * 302.33768 * 10 9 8 39 39 H 1.09001 * 109.46215 * 179.19227 * 11 10 9 40 40 H 1.09002 * 109.46119 * 299.17261 * 11 10 9 41 41 H 1.09005 * 109.47364 * 60.00447 * 15 13 12 42 42 H 1.09007 * 109.47107 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.47706 * 299.99798 * 15 13 12 44 44 H 1.09004 * 109.46814 * 184.22101 * 16 13 12 45 45 H 1.09001 * 109.47040 * 304.21875 * 16 13 12 46 46 H 0.96999 * 119.99653 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.46664 * 301.74267 * 25 12 11 48 48 H 1.08995 * 109.45324 * 181.76435 * 25 12 11 49 49 H 1.09003 * 109.50237 * 180.87967 * 26 25 12 50 50 H 1.08997 * 109.50214 * 60.75746 * 26 25 12 51 51 H 1.07996 * 120.03463 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 -0.0005 6 6 5.7822 0.0115 -0.0017 7 6 3.5847 -1.1958 0.0005 8 8 4.2658 -2.3717 0.0011 9 6 3.4898 -3.5711 0.0385 10 6 4.3343 -4.7092 0.6183 11 6 3.5180 -6.0036 0.6009 12 7 3.1237 -6.3163 -0.7787 13 6 2.4575 -7.6235 -0.8522 14 1 3.0403 -8.3599 -0.2988 15 6 1.0582 -7.5178 -0.2428 16 6 2.3453 -8.0570 -2.3152 17 6 3.7250 -8.2616 -2.8858 18 1 4.5950 -8.0983 -2.2670 19 6 3.8768 -8.6572 -4.1979 20 7 2.8173 -8.8565 -4.9513 21 14 5.5869 -8.9101 -4.9054 22 1 6.0076 -10.3182 -4.6923 23 1 5.5696 -8.6135 -6.3604 24 1 6.5433 -7.9996 -4.2260 25 6 2.2725 -5.2597 -1.3402 26 6 3.0516 -3.9431 -1.3807 27 6 2.1970 -1.1965 -0.0053 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6565 2.1324 -0.0004 32 1 4.1176 2.1382 -0.0010 33 1 6.1447 0.0126 -1.0297 34 1 6.1433 0.9026 0.5117 35 1 6.1486 -0.8774 0.5118 36 1 2.6097 -3.4162 0.6627 37 1 4.6137 -4.4688 1.6441 38 1 5.2341 -4.8382 0.0168 39 1 4.1216 -6.8189 0.9999 40 1 2.6256 -5.8784 1.2142 41 1 0.4755 -6.7814 -0.7963 42 1 0.5637 -8.4876 -0.2978 43 1 1.1382 -7.2090 0.7994 44 1 1.7851 -8.9901 -2.3757 45 1 1.8275 -7.2849 -2.8843 46 1 2.9241 -9.1345 -5.8744 47 1 1.3860 -5.1382 -0.7176 48 1 1.9715 -5.5348 -2.3510 49 1 2.4144 -3.1554 -1.7830 50 1 3.9308 -4.0599 -2.0142 51 1 1.6571 -2.1318 -0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351650559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:42 Heat of formation + Delta-G solvation = -44.263245 kcal Electronic energy + Delta-G solvation = -27406.352116 eV Core-core repulsion = 23883.346093 eV Total energy + Delta-G solvation = -3523.006024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59595 -40.16278 -38.54939 -35.85244 -34.72137 -34.08125 -31.96306 -31.23042 -30.45696 -30.06959 -29.09989 -26.00575 -25.45573 -24.88026 -24.24046 -23.06506 -21.97327 -21.22533 -20.15462 -18.61186 -18.34552 -17.34438 -16.83568 -16.55151 -16.45851 -16.31149 -15.74913 -15.31653 -15.30411 -14.94405 -14.67655 -14.53739 -14.25132 -14.12086 -13.85446 -13.77424 -13.60790 -13.48168 -13.41848 -13.26061 -12.96373 -12.79778 -12.71545 -12.58256 -12.49062 -12.37945 -12.19726 -12.13570 -12.05485 -11.86673 -11.53895 -11.45181 -11.32493 -11.08360 -10.91123 -10.46938 -9.61820 -8.96702 -8.90753 -8.09775 -6.13741 0.36804 0.51590 1.40607 1.41863 1.53056 2.20214 2.47259 2.78031 3.06822 3.26899 3.66252 3.72967 3.84218 3.88048 3.99446 4.12691 4.13896 4.20661 4.31368 4.32545 4.33646 4.40720 4.47777 4.57473 4.59232 4.66307 4.74375 4.75560 4.79678 4.81749 4.82476 4.84687 4.89059 4.91636 4.97432 5.11580 5.14369 5.16330 5.19619 5.23108 5.34326 5.38463 5.43086 5.50759 5.57860 5.68178 5.71402 5.90604 5.95073 6.32137 6.44743 6.50864 6.53873 7.00397 7.51920 9.02241 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.003217 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.356615 B = 8701.606783 C = 9277.837691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.163 4.163 4 C -0.083 4.083 5 C -0.146 4.146 6 C -0.101 4.101 7 C 0.115 3.885 8 O -0.317 6.317 9 C 0.096 3.904 10 C -0.103 4.103 11 C 0.060 3.940 12 N -0.534 5.534 13 C 0.096 3.904 14 H 0.068 0.932 15 C -0.174 4.174 16 C 0.037 3.963 17 C -0.496 4.496 18 H 0.057 0.943 19 C -0.005 4.005 20 N -0.940 5.940 21 Si 0.953 3.047 22 H -0.274 1.274 23 H -0.288 1.288 24 H -0.269 1.269 25 C 0.068 3.932 26 C -0.129 4.129 27 C -0.221 4.221 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.068 0.932 44 H -0.008 1.008 45 H -0.005 1.005 46 H 0.258 0.742 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.071 0.929 50 H 0.056 0.944 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 20.185 15.009 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.181 4.181 4 C -0.100 4.100 5 C -0.146 4.146 6 C -0.157 4.157 7 C 0.069 3.931 8 O -0.231 6.231 9 C 0.040 3.960 10 C -0.140 4.140 11 C -0.067 4.067 12 N -0.258 5.258 13 C -0.012 4.012 14 H 0.086 0.914 15 C -0.232 4.232 16 C -0.001 4.001 17 C -0.535 4.535 18 H 0.076 0.924 19 C -0.201 4.201 20 N -0.583 5.583 21 Si 0.779 3.221 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.194 1.194 25 C -0.060 4.060 26 C -0.167 4.167 27 C -0.240 4.240 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.010 0.990 45 H 0.013 0.987 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.075 0.925 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.355 20.060 14.565 24.827 hybrid contribution -0.211 -0.691 -0.670 0.986 sum -1.566 19.369 13.894 23.888 Atomic orbital electron populations 1.20856 0.89497 1.03698 1.03045 1.20039 0.97294 0.92341 0.96563 1.21241 0.94268 0.98140 1.04416 1.21178 0.94364 0.97120 0.97369 1.19590 0.97385 0.90633 1.07033 1.20580 0.89907 1.02997 1.02252 1.19141 0.90952 0.86040 0.96918 1.86093 1.36417 1.12497 1.88142 1.22467 0.94621 0.82600 0.96315 1.21576 0.98751 0.91863 1.01855 1.22073 0.98681 0.96971 0.89009 1.61915 1.42947 1.01655 1.19329 1.21609 0.92545 0.89971 0.97124 0.91376 1.22390 0.98026 1.02136 1.00698 1.19044 0.95576 0.94057 0.91378 1.21497 0.93778 1.42174 0.96041 0.92440 1.25825 1.00031 0.96247 0.97990 1.70091 1.30557 1.49759 1.07869 0.85625 0.80796 0.78487 0.77187 1.20022 1.21392 1.19385 1.21868 0.93942 0.90366 0.99781 1.22026 1.00684 0.96783 0.97234 1.21311 0.92909 0.99686 1.10075 0.90553 0.91402 0.89715 0.83662 0.83063 0.91723 0.89808 0.92361 0.90204 0.88933 0.91657 0.89839 0.93612 0.93004 0.92424 0.91332 0.98975 0.98715 0.93356 0.93684 0.92635 0.91047 0.92495 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 10.01 71.24 0.71 -0.96 16 2 C -0.06 -1.25 5.88 -19.88 -0.12 -1.37 16 3 C -0.16 -2.90 9.70 22.28 0.22 -2.68 16 4 C -0.08 -1.53 9.70 22.25 0.22 -1.31 16 5 C -0.15 -3.35 5.89 -19.77 -0.12 -3.47 16 6 C -0.10 -2.00 9.79 71.24 0.70 -1.30 16 7 C 0.11 3.01 6.57 22.51 0.15 3.16 16 8 O -0.32 -9.04 8.86 -92.34 -0.82 -9.86 16 9 C 0.10 2.57 2.18 30.67 0.07 2.64 16 10 C -0.10 -2.69 5.75 30.64 0.18 -2.51 16 11 C 0.06 1.69 5.17 86.32 0.45 2.13 16 12 N -0.53 -19.43 4.28 -871.10 -3.73 -23.15 16 13 C 0.10 3.77 2.25 44.91 0.10 3.87 16 14 H 0.07 2.70 7.94 -2.38 -0.02 2.68 16 15 C -0.17 -5.53 8.40 71.98 0.60 -4.93 16 16 C 0.04 1.89 4.40 29.85 0.13 2.03 16 17 C -0.50 -28.27 8.82 25.60 0.23 -28.05 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 19 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 20 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 21 Si 0.95 46.11 29.54 68.60 2.03 48.14 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 25 C 0.07 2.35 4.48 86.33 0.39 2.74 16 26 C -0.13 -4.04 5.40 30.65 0.17 -3.88 16 27 C -0.22 -5.29 7.94 22.37 0.18 -5.11 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 0.96 8.09 -2.38 -0.02 0.94 16 30 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 31 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 35 H 0.06 1.28 7.53 -2.39 -0.02 1.26 16 36 H 0.08 1.92 6.20 -2.38 -0.01 1.91 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.08 2.26 7.99 -2.39 -0.02 2.24 16 40 H 0.05 1.11 6.97 -2.39 -0.02 1.10 16 41 H 0.05 1.66 6.45 -2.38 -0.02 1.64 16 42 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.07 1.79 6.92 -2.39 -0.02 1.78 16 44 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 45 H -0.01 -0.30 6.35 -2.39 -0.02 -0.32 16 46 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 47 H 0.05 1.35 6.57 -2.38 -0.02 1.34 16 48 H 0.06 2.30 6.25 -2.39 -0.01 2.29 16 49 H 0.07 2.10 7.06 -2.39 -0.02 2.08 16 50 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.13 2.97 5.50 -2.91 -0.02 2.95 16 Total: -1.00 -67.23 390.19 3.36 -63.87 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.89 Total: 17.71 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 4.70 Total: -38.83 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -3.44 Total: -81.03 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.82 Total: -9.86 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -67.23 3.36 -63.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351650559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.606 kcal (2) G-P(sol) polarization free energy of solvation -67.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds