Wall clock time and date at job start Tue Mar 31 2020 11:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38291 * 119.97170 * 2 1 4 4 C 1.38243 * 120.10871 * 180.27652 * 3 2 1 5 5 C 1.38165 * 120.05880 * 359.45020 * 4 3 2 6 6 C 1.50698 * 120.03088 * 180.25203 * 5 4 3 7 7 C 1.38711 * 119.94154 * 0.57166 * 5 4 3 8 8 O 1.35902 * 120.05412 * 179.72835 * 7 5 4 9 9 C 1.42903 * 116.99579 * 185.13884 * 8 7 5 10 10 C 1.53122 * 109.52314 * 275.49981 * 9 8 7 11 11 C 1.53037 * 109.27483 * 182.50388 * 10 9 8 12 12 N 1.46847 * 109.57335 * 59.08786 * 11 10 9 13 13 C 1.46904 * 111.00142 * 174.19019 * 12 11 10 14 14 H 1.08999 * 109.47057 * 174.11307 * 13 12 11 15 15 C 1.53000 * 109.47260 * 54.11116 * 13 12 11 16 16 C 1.53004 * 109.47143 * 294.11416 * 13 12 11 17 17 C 1.50705 * 109.46941 * 297.54848 * 16 13 12 18 18 H 1.07997 * 119.99751 * 359.97438 * 17 16 13 19 19 C 1.37876 * 119.99902 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00075 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99984 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47554 * 90.00074 * 21 19 17 23 23 H 1.48509 * 109.46764 * 210.00193 * 21 19 17 24 24 H 1.48497 * 109.47139 * 329.99769 * 21 19 17 25 25 C 1.46841 * 111.20019 * 298.28600 * 12 11 10 26 26 C 1.53038 * 109.52132 * 61.74407 * 25 12 11 27 27 C 1.38126 * 119.97486 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47348 * 89.99858 * 1 2 3 29 29 H 1.09003 * 109.46639 * 210.00183 * 1 2 3 30 30 H 1.08997 * 109.47278 * 329.99759 * 1 2 3 31 31 H 1.07992 * 119.94069 * 0.02562 * 3 2 1 32 32 H 1.08008 * 119.96957 * 179.72473 * 4 3 2 33 33 H 1.08998 * 109.47466 * 270.31942 * 6 5 4 34 34 H 1.08998 * 109.47088 * 30.32098 * 6 5 4 35 35 H 1.08996 * 109.47558 * 150.31779 * 6 5 4 36 36 H 1.08996 * 109.52869 * 35.62949 * 9 8 7 37 37 H 1.08999 * 109.50514 * 302.39086 * 10 9 8 38 38 H 1.09004 * 109.49984 * 62.50357 * 10 9 8 39 39 H 1.08996 * 109.41544 * 299.06924 * 11 10 9 40 40 H 1.09001 * 109.46119 * 179.13209 * 11 10 9 41 41 H 1.08998 * 109.46866 * 300.00466 * 15 13 12 42 42 H 1.09002 * 109.47030 * 59.99864 * 15 13 12 43 43 H 1.08994 * 109.47472 * 180.02562 * 15 13 12 44 44 H 1.09002 * 109.47267 * 57.54215 * 16 13 12 45 45 H 1.08997 * 109.47257 * 177.55111 * 16 13 12 46 46 H 0.97007 * 120.00336 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.46627 * 301.72653 * 25 12 11 48 48 H 1.09002 * 109.46451 * 181.75770 * 25 12 11 49 49 H 1.08996 * 109.50437 * 180.88004 * 26 25 12 50 50 H 1.09006 * 109.53735 * 60.78126 * 26 25 12 51 51 H 1.08001 * 120.02321 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 -0.0058 5 6 4.2752 0.0071 -0.0001 6 6 5.7822 0.0115 -0.0006 7 6 3.5846 -1.1958 -0.0006 8 8 4.2659 -2.3717 -0.0005 9 6 3.4937 -3.5687 -0.1151 10 6 2.9895 -3.9869 1.2689 11 6 2.2165 -5.3022 1.1489 12 7 3.0943 -6.3397 0.5926 13 6 2.4273 -7.6486 0.5916 14 1 3.0570 -8.3768 0.0805 15 6 1.0850 -7.5365 -0.1341 16 6 2.1910 -8.1017 2.0338 17 6 3.5164 -8.2702 2.7309 18 1 4.4353 -8.0741 2.1984 19 6 3.5559 -8.6756 4.0481 20 7 4.7125 -8.8231 4.6563 21 14 1.9664 -9.0154 4.9688 22 1 1.5918 -10.4424 4.7999 23 1 2.1577 -8.7213 6.4118 24 1 0.8863 -8.1526 4.4267 25 6 3.5517 -5.9812 -0.7559 26 6 4.3660 -4.6870 -0.6925 27 6 2.1971 -1.1965 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6565 2.1324 0.0004 32 1 4.1175 2.1382 -0.0103 33 1 6.1452 0.0132 -1.0284 34 1 6.1431 0.9022 0.5136 35 1 6.1484 -0.8776 0.5125 36 1 2.6439 -3.3924 -0.7744 37 1 3.8380 -4.1242 1.9392 38 1 2.3329 -3.2127 1.6662 39 1 1.3596 -5.1600 0.4904 40 1 1.8692 -5.6106 2.1350 41 1 0.4554 -6.8082 0.3770 42 1 1.2533 -7.2137 -1.1615 43 1 0.5899 -8.5075 -0.1345 44 1 1.5977 -7.3522 2.5576 45 1 1.6574 -9.0522 2.0332 46 1 4.7403 -9.1080 5.5832 47 1 2.6887 -5.8359 -1.4056 48 1 4.1743 -6.7828 -1.1533 49 1 4.6922 -4.4128 -1.6957 50 1 5.2372 -4.8353 -0.0544 51 1 1.6570 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351650560.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:45 Heat of formation + Delta-G solvation = -24.511759 kcal Electronic energy + Delta-G solvation = -27458.332843 eV Core-core repulsion = 23936.183308 eV Total energy + Delta-G solvation = -3522.149535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.60531 -39.00978 -37.50712 -34.50336 -33.63811 -32.23851 -30.76130 -30.22803 -29.35046 -29.28930 -27.77882 -25.06944 -24.33317 -23.14188 -22.80768 -21.86346 -21.05315 -19.91058 -18.77861 -17.63037 -16.56547 -16.32127 -15.80300 -15.41240 -15.32414 -14.64653 -14.47339 -14.28479 -14.06808 -13.88801 -13.49136 -13.42296 -13.18526 -12.98278 -12.89501 -12.72216 -12.46711 -12.35890 -12.10796 -11.99162 -11.90556 -11.68627 -11.51644 -11.43459 -11.31708 -11.14097 -10.96014 -10.70598 -10.56516 -10.39900 -10.15991 -10.10745 -9.62641 -9.54464 -9.02424 -8.77606 -8.42831 -8.06698 -7.57178 -5.90861 -3.85070 1.20374 1.38084 3.20695 3.34415 3.42772 3.44070 3.62484 4.38378 4.53599 4.59757 4.68595 4.82169 4.88297 4.93003 5.03123 5.10159 5.14763 5.38730 5.39225 5.42131 5.42724 5.43745 5.52039 5.59059 5.60331 5.60801 5.64709 5.65245 5.71570 5.82346 5.85438 5.86454 5.91413 5.96070 6.12532 6.17717 6.22428 6.26499 6.36440 6.39828 6.40680 6.49329 6.52413 6.57661 6.74889 6.77562 7.08605 7.31572 7.48537 7.74411 7.78285 7.94416 8.72006 9.22723 9.71994 11.23109 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015371 B = 0.003171 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.198792 B = 8827.493853 C = 8926.974418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 C -0.162 4.162 4 C -0.082 4.082 5 C -0.128 4.128 6 C -0.104 4.104 7 C 0.142 3.858 8 O -0.304 6.304 9 C 0.089 3.911 10 C -0.140 4.140 11 C 0.061 3.939 12 N -0.507 5.507 13 C 0.097 3.903 14 H 0.076 0.924 15 C -0.188 4.188 16 C -0.007 4.007 17 C -0.490 4.490 18 H 0.080 0.920 19 C 0.062 3.938 20 N -0.907 5.907 21 Si 0.871 3.129 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.269 1.269 25 C 0.059 3.941 26 C -0.108 4.108 27 C -0.208 4.208 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.016 0.984 45 H 0.013 0.987 46 H 0.259 0.741 47 H 0.026 0.974 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.086 0.914 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.981 18.244 -13.019 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.054 4.054 3 C -0.180 4.180 4 C -0.100 4.100 5 C -0.129 4.129 6 C -0.161 4.161 7 C 0.097 3.903 8 O -0.218 6.218 9 C 0.033 3.967 10 C -0.178 4.178 11 C -0.067 4.067 12 N -0.231 5.231 13 C -0.011 4.011 14 H 0.095 0.905 15 C -0.247 4.247 16 C -0.045 4.045 17 C -0.529 4.529 18 H 0.098 0.902 19 C -0.138 4.138 20 N -0.547 5.547 21 Si 0.699 3.301 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.194 1.194 25 C -0.070 4.070 26 C -0.146 4.146 27 C -0.226 4.226 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.044 0.956 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.105 0.895 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.273 18.102 -12.525 22.636 hybrid contribution -1.825 -0.211 0.162 1.845 sum -7.098 17.892 -12.363 22.877 Atomic orbital electron populations 1.20808 0.91230 1.02882 1.02288 1.19680 0.95874 0.92554 0.97315 1.20858 0.94089 0.97317 1.05755 1.20824 0.93954 0.96713 0.98501 1.19272 0.96553 0.90399 1.06645 1.20586 0.90590 1.02814 1.02061 1.18841 0.90257 0.86045 0.95206 1.86124 1.36223 1.12191 1.87250 1.22591 0.94001 0.82538 0.97565 1.22174 1.01808 0.97086 0.96736 1.22006 0.93075 0.90551 1.01077 1.61996 1.39823 1.01916 1.19350 1.21680 0.91175 0.89625 0.98658 0.90542 1.22569 1.00405 1.01910 0.99779 1.19694 0.98277 0.95296 0.91187 1.21044 0.92498 1.43180 0.96141 0.90172 1.25008 0.95399 0.95703 0.97642 1.69907 1.24175 1.48768 1.11848 0.86928 0.85125 0.78786 0.79232 1.20599 1.21618 1.19399 1.22021 0.97701 0.96350 0.90901 1.21624 0.99557 0.92404 1.01046 1.21210 0.93130 0.98945 1.09363 0.91153 0.91462 0.91447 0.86252 0.85681 0.91666 0.91960 0.90905 0.91745 0.89367 0.91654 0.95794 0.89189 0.92886 0.93760 0.92441 0.96603 0.96836 0.93070 0.95629 0.90172 0.91335 0.89531 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 36.00 0.36 -0.61 16 2 C -0.05 -0.59 5.88 -104.64 -0.62 -1.21 16 3 C -0.16 -1.66 9.70 -39.56 -0.38 -2.04 16 4 C -0.08 -0.86 9.70 -39.61 -0.38 -1.24 16 5 C -0.13 -1.55 5.89 -104.47 -0.62 -2.17 16 6 C -0.10 -1.09 9.79 36.00 0.35 -0.74 16 7 C 0.14 1.92 6.57 -39.22 -0.26 1.66 16 8 O -0.30 -4.40 8.85 -19.43 -0.17 -4.57 16 9 C 0.09 1.22 2.18 -26.60 -0.06 1.17 16 10 C -0.14 -2.14 5.37 -26.65 -0.14 -2.29 16 11 C 0.06 1.01 4.54 -3.83 -0.02 0.99 16 12 N -0.51 -9.12 4.24 -226.69 -0.96 -10.08 16 13 C 0.10 1.82 2.28 -67.71 -0.15 1.67 16 14 H 0.08 1.48 7.99 -51.93 -0.41 1.07 16 15 C -0.19 -2.89 8.45 37.16 0.31 -2.58 16 16 C -0.01 -0.16 3.40 -27.88 -0.09 -0.26 16 17 C -0.49 -13.68 9.33 -34.44 -0.32 -14.00 16 18 H 0.08 2.46 7.97 -52.49 -0.42 2.04 16 19 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 20 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 21 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.27 -6.42 6.54 56.52 0.37 -6.06 16 25 C 0.06 0.86 5.13 -3.84 -0.02 0.84 16 26 C -0.11 -1.50 5.75 -26.65 -0.15 -1.65 16 27 C -0.21 -2.58 7.91 -39.43 -0.31 -2.89 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.07 0.86 7.53 -51.93 -0.39 0.46 16 36 H 0.06 0.83 6.34 -51.93 -0.33 0.50 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.06 0.93 6.86 -51.93 -0.36 0.57 16 39 H 0.02 0.36 6.58 -51.93 -0.34 0.02 16 40 H 0.09 1.70 6.17 -51.93 -0.32 1.37 16 41 H 0.05 0.80 6.46 -51.93 -0.34 0.47 16 42 H 0.04 0.60 6.82 -51.93 -0.35 0.25 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.02 0.37 5.38 -51.93 -0.28 0.09 16 45 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.03 0.34 6.88 -51.93 -0.36 -0.01 16 48 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 51 H 0.13 1.55 5.39 -52.49 -0.28 1.26 16 LS Contribution 386.10 15.07 5.82 5.82 Total: -1.00 -30.98 386.10 -10.61 -41.59 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.80 Total: 1.22 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -2.60 Total: -23.63 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.19 Total: -37.49 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.17 Total: -4.57 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.98 -10.61 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351650560.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.075 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds