Wall clock time and date at job start Tue Mar 31 2020 12:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46798 * 2 1 4 4 C 1.53120 * 109.52187 * 185.00213 * 3 2 1 5 5 C 1.53037 * 109.28088 * 182.44109 * 4 3 2 6 6 N 1.46857 * 109.52299 * 59.17831 * 5 4 3 7 7 C 1.46890 * 110.99941 * 174.15959 * 6 5 4 8 8 C 1.50698 * 109.47146 * 169.99847 * 7 6 5 9 9 C 1.38289 * 119.97869 * 270.23400 * 8 7 6 10 10 C 1.38237 * 120.11494 * 180.27323 * 9 8 7 11 11 C 1.38167 * 120.05858 * 359.74537 * 10 9 8 12 12 C 1.38709 * 119.93745 * 0.02562 * 11 10 9 13 13 O 1.35906 * 120.05198 * 179.97438 * 12 11 10 14 14 C 1.42899 * 117.00229 * 0.02562 * 13 12 11 15 15 C 1.52994 * 109.47206 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47149 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99936 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00355 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99590 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00355 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47463 * 89.99963 * 20 18 16 22 22 H 1.48500 * 109.47332 * 210.00437 * 20 18 16 23 23 H 1.48503 * 109.46959 * 330.00314 * 20 18 16 24 24 C 1.38125 * 119.96886 * 89.99848 * 8 7 6 25 25 C 1.46842 * 111.19636 * 298.26071 * 6 5 4 26 26 C 1.53044 * 109.52784 * 61.74197 * 25 6 5 27 27 H 1.08997 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46741 * 299.99554 * 1 2 3 29 29 H 1.08997 * 109.46925 * 59.99677 * 1 2 3 30 30 H 1.08995 * 109.46741 * 240.00446 * 2 1 3 31 31 H 1.08994 * 109.47305 * 119.99980 * 2 1 3 32 32 H 1.09000 * 109.52546 * 305.12845 * 3 2 1 33 33 H 1.09000 * 109.50203 * 62.49743 * 4 3 2 34 34 H 1.09005 * 109.53566 * 302.40318 * 4 3 2 35 35 H 1.09000 * 109.46342 * 299.16511 * 5 4 3 36 36 H 1.08996 * 109.45874 * 179.18720 * 5 4 3 37 37 H 1.09004 * 109.47265 * 50.00229 * 7 6 5 38 38 H 1.08998 * 109.47715 * 290.00258 * 7 6 5 39 39 H 1.08001 * 119.93832 * 0.02562 * 9 8 7 40 40 H 1.08006 * 119.97237 * 179.77245 * 10 9 8 41 41 H 1.07993 * 120.03379 * 179.97438 * 11 10 9 42 42 H 1.09001 * 109.46748 * 299.99921 * 14 13 12 43 43 H 1.08999 * 109.47366 * 59.99267 * 14 13 12 44 44 H 1.09001 * 109.47354 * 299.99735 * 15 14 13 45 45 H 1.09001 * 109.47032 * 60.00145 * 15 14 13 46 46 H 0.97000 * 119.99198 * 179.97438 * 19 18 16 47 47 H 1.08002 * 120.03152 * 0.02562 * 24 8 7 48 48 H 1.08999 * 109.46160 * 181.75372 * 25 6 5 49 49 H 1.09000 * 109.46292 * 301.72352 * 25 6 5 50 50 H 1.08994 * 109.50650 * 180.87956 * 26 25 6 51 51 H 1.08999 * 109.53178 * 60.77517 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5660 1.4458 -0.1258 5 6 4.0751 2.8877 -0.0640 6 7 3.6697 3.4971 1.2091 7 6 4.2578 4.8343 1.3636 8 6 3.6331 5.5240 2.5489 9 6 2.4953 6.2918 2.3809 10 6 1.9231 6.9304 3.4653 11 6 2.4840 6.7985 4.7211 12 6 3.6226 6.0251 4.8930 13 8 4.1766 5.8943 6.1271 14 6 3.5336 6.5807 7.2030 15 6 4.2944 6.3162 8.5038 16 6 3.6166 7.0406 9.6383 17 1 2.7315 7.6303 9.4503 18 6 4.1259 6.9498 10.9163 19 7 5.2034 6.2313 11.1452 20 14 3.2854 7.8471 12.3226 21 1 2.2626 6.9611 12.9343 22 1 4.2948 8.2183 13.3466 23 1 2.6305 9.0753 11.8051 24 6 4.1947 5.3848 3.8031 25 6 2.2072 3.5481 1.3315 26 6 1.6424 2.1258 1.3114 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6041 1.9830 -0.8402 33 1 3.8536 0.9988 -1.0774 34 1 4.0004 0.8711 0.6922 35 1 3.6516 3.4581 -0.8907 36 1 5.1624 2.8924 -0.1388 37 1 4.0714 5.4194 0.4630 38 1 5.3324 4.7426 1.5213 39 1 2.0552 6.3960 1.4002 40 1 1.0366 7.5325 3.3309 41 1 2.0370 7.2979 5.5679 42 1 3.5253 7.6511 6.9976 43 1 2.5091 6.2219 7.3023 44 1 4.3022 5.2457 8.7089 45 1 5.3189 6.6748 8.4048 46 1 5.5618 6.1677 12.0443 47 1 5.0814 4.7823 3.9344 48 1 1.9380 4.0324 2.2701 49 1 1.7926 4.1153 0.4982 50 1 0.5557 2.1647 1.3865 51 1 2.0454 1.5617 2.1524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352383630.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:06 Heat of formation + Delta-G solvation = -41.028664 kcal Electronic energy + Delta-G solvation = -26100.788792 eV Core-core repulsion = 22577.923031 eV Total energy + Delta-G solvation = -3522.865762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.17413 -39.23754 -37.37148 -35.48486 -33.37628 -32.21348 -31.06651 -30.75628 -30.02872 -29.09241 -26.44090 -25.00388 -24.03450 -23.39864 -22.22165 -21.63504 -21.16401 -20.10259 -19.84922 -17.56842 -16.34261 -16.20126 -15.75384 -15.68073 -15.29594 -15.19098 -14.98672 -14.62340 -14.42531 -14.28055 -13.98007 -13.83902 -13.35392 -12.96691 -12.86770 -12.77159 -12.38822 -12.31984 -12.22614 -11.99561 -11.77936 -11.44822 -11.35454 -11.35224 -11.27901 -11.19055 -10.87314 -10.79970 -10.71144 -10.46822 -10.39972 -10.28572 -9.84232 -9.65433 -9.29585 -8.78133 -8.45023 -8.39090 -7.81946 -6.09972 -4.14610 1.43705 1.66670 3.27550 3.33446 3.36230 3.65682 3.83129 4.10288 4.40628 4.43312 4.50089 4.56088 4.72647 4.93716 4.98259 5.04363 5.06040 5.13624 5.18763 5.24657 5.26383 5.31100 5.31851 5.39453 5.45434 5.46444 5.49104 5.61943 5.68943 5.70065 5.73327 5.78979 5.85129 5.86505 5.89602 6.00444 6.04077 6.06580 6.07565 6.19073 6.24253 6.54782 6.57551 6.66557 6.73759 6.88330 6.94995 7.01266 7.51428 7.64841 7.81904 8.07408 8.24289 8.90936 9.49614 11.01595 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.002172 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.687400 B =12889.017527 C =13339.701804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.111 4.111 5 C 0.056 3.944 6 N -0.530 5.530 7 C 0.098 3.902 8 C -0.051 4.051 9 C -0.167 4.167 10 C -0.081 4.081 11 C -0.211 4.211 12 C 0.146 3.854 13 O -0.315 6.315 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.139 4.139 25 C 0.051 3.949 26 C -0.113 4.113 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.129 0.871 48 H 0.087 0.913 49 H 0.028 0.972 50 H 0.066 0.934 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.702 -7.680 -26.360 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.108 4.108 4 C -0.149 4.149 5 C -0.072 4.072 6 N -0.255 5.255 7 C -0.029 4.029 8 C -0.051 4.051 9 C -0.186 4.186 10 C -0.099 4.099 11 C -0.231 4.231 12 C 0.099 3.901 13 O -0.228 6.228 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.159 4.159 25 C -0.077 4.077 26 C -0.150 4.150 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.147 0.853 48 H 0.105 0.895 49 H 0.046 0.954 50 H 0.085 0.915 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.215 -8.141 -25.768 27.729 hybrid contribution -0.948 1.191 0.250 1.542 sum -7.162 -6.951 -25.518 27.400 Atomic orbital electron populations 1.21818 0.95988 1.01451 1.01893 1.21554 0.95839 0.96291 1.01921 1.21246 0.95508 0.95970 0.98048 1.21636 0.95258 0.96071 1.01942 1.22086 1.00360 0.95189 0.89549 1.62025 1.09693 1.20242 1.33543 1.21035 0.99348 0.87997 0.94536 1.19365 0.95199 0.96797 0.93753 1.20780 0.97604 1.01567 0.98627 1.20831 0.98941 0.98062 0.92053 1.21386 0.98476 1.04304 0.98884 1.19202 0.91499 0.93219 0.86214 1.86181 1.53322 1.69221 1.14076 1.23324 0.96977 0.94662 0.85894 1.19124 0.96153 0.98471 0.87454 1.20969 1.12306 1.30898 0.92272 0.92390 1.24996 0.94974 0.95375 0.98890 1.69982 1.21568 1.39631 1.21539 0.86484 0.79176 0.79973 0.81733 1.20489 1.21046 1.19781 1.20268 1.02581 1.02986 0.90035 1.22245 0.86978 0.96883 1.01573 1.21697 1.00011 0.95593 0.97725 0.92954 0.92361 0.92991 0.92256 0.91814 0.91774 0.91746 0.90899 0.95158 0.90737 0.94052 0.89688 0.86890 0.86251 0.85275 0.93166 0.93162 0.95376 0.95388 0.92705 0.85272 0.89509 0.95357 0.91530 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.68 37.16 0.36 -0.66 16 2 C -0.12 -0.82 5.41 -26.73 -0.14 -0.97 16 3 C -0.09 -0.69 2.25 -90.49 -0.20 -0.89 16 4 C -0.11 -0.86 5.38 -26.65 -0.14 -1.00 16 5 C 0.06 0.47 5.42 -3.83 -0.02 0.45 16 6 N -0.53 -5.53 4.80 -236.12 -1.13 -6.67 16 7 C 0.10 1.03 5.43 -4.98 -0.03 1.00 16 8 C -0.05 -0.65 4.13 -104.65 -0.43 -1.08 16 9 C -0.17 -2.01 7.77 -39.56 -0.31 -2.32 16 10 C -0.08 -1.05 10.04 -39.61 -0.40 -1.44 16 11 C -0.21 -3.31 9.04 -39.43 -0.36 -3.67 16 12 C 0.15 2.56 6.69 -39.22 -0.26 2.30 16 13 O -0.31 -6.58 10.14 -19.44 -0.20 -6.77 16 14 C 0.07 1.42 4.68 37.15 0.17 1.59 16 15 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 16 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 20 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.14 -2.15 9.64 -39.43 -0.38 -2.53 16 25 C 0.05 0.52 4.57 -3.83 -0.02 0.50 16 26 C -0.11 -1.02 5.08 -26.64 -0.14 -1.16 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.40 6.64 -51.93 -0.34 0.06 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 37 H 0.04 0.39 8.02 -51.93 -0.42 -0.02 16 38 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 39 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 42 H 0.05 1.03 7.66 -51.93 -0.40 0.64 16 43 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 48 H 0.09 1.04 5.63 -51.93 -0.29 0.75 16 49 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.07 0.56 6.71 -51.93 -0.35 0.21 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -29.75 396.94 -11.74 -41.49 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -9.25 Total: -1.72 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -2.85 Total: -22.79 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: -0.40 Total: -32.50 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.20 Total: -6.77 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.75 -11.74 -41.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352383630.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.458 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds