Wall clock time and date at job start Tue Mar 31 2020 11:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.57832 * 2 1 4 4 C 1.53123 * 109.52198 * 120.16076 * 2 1 3 5 5 C 1.53039 * 109.31189 * 62.27073 * 4 2 1 6 6 N 1.46842 * 109.52266 * 59.15550 * 5 4 2 7 7 C 1.46910 * 110.99703 * 174.16402 * 6 5 4 8 8 C 1.50699 * 109.47168 * 170.00315 * 7 6 5 9 9 C 1.38285 * 119.97181 * 89.99720 * 8 7 6 10 10 C 1.38241 * 120.10928 * 179.97438 * 9 8 7 11 11 C 1.38169 * 120.05828 * 359.95907 * 10 9 8 12 12 C 1.38715 * 119.94194 * 0.02562 * 11 10 9 13 13 O 1.35895 * 120.05112 * 180.02562 * 12 11 10 14 14 C 1.42898 * 117.00560 * 359.97438 * 13 12 11 15 15 C 1.53002 * 109.47388 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47004 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00180 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99688 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00245 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47081 * 89.99786 * 20 18 16 22 22 H 1.48506 * 109.46990 * 209.99503 * 20 18 16 23 23 H 1.48496 * 109.47082 * 329.99656 * 20 18 16 24 24 C 1.38118 * 119.97179 * 269.72479 * 8 7 6 25 25 C 1.46849 * 111.20050 * 298.25785 * 6 5 4 26 26 C 1.53036 * 109.52274 * 61.74759 * 25 6 5 27 27 H 1.09006 * 109.46735 * 299.84068 * 1 2 3 28 28 H 1.09000 * 109.46901 * 59.83934 * 1 2 3 29 29 H 1.08994 * 109.47213 * 179.83872 * 1 2 3 30 30 H 1.08997 * 109.47583 * 180.15752 * 3 2 1 31 31 H 1.09002 * 109.47275 * 300.15983 * 3 2 1 32 32 H 1.09005 * 109.47239 * 60.15484 * 3 2 1 33 33 H 1.09002 * 109.50371 * 302.30623 * 4 2 1 34 34 H 1.09003 * 109.50070 * 182.22783 * 4 2 1 35 35 H 1.08995 * 109.46501 * 179.17754 * 5 4 2 36 36 H 1.09002 * 109.45552 * 299.15457 * 5 4 2 37 37 H 1.08999 * 109.46693 * 290.00367 * 7 6 5 38 38 H 1.09002 * 109.47019 * 49.99864 * 7 6 5 39 39 H 1.07998 * 119.94528 * 359.97438 * 9 8 7 40 40 H 1.08001 * 119.97186 * 179.97438 * 10 9 8 41 41 H 1.07999 * 120.02534 * 180.02562 * 11 10 9 42 42 H 1.09003 * 109.46918 * 300.00186 * 14 13 12 43 43 H 1.08998 * 109.47086 * 59.99764 * 14 13 12 44 44 H 1.09003 * 109.46947 * 299.99807 * 15 14 13 45 45 H 1.08997 * 109.47006 * 59.99849 * 15 14 13 46 46 H 0.96996 * 119.99940 * 180.02562 * 19 18 16 47 47 H 1.08005 * 120.02416 * 359.97438 * 24 8 7 48 48 H 1.09001 * 109.46071 * 181.75754 * 25 6 5 49 49 H 1.09002 * 109.46350 * 301.73871 * 25 6 5 50 50 H 1.09000 * 109.50390 * 60.75234 * 26 25 6 51 51 H 1.08997 * 109.50400 * 180.83976 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0427 1.4415 0.0000 4 6 2.0417 -0.7251 1.2478 5 6 1.5775 -2.1829 1.2121 6 7 2.0932 -2.8327 0.0005 7 6 1.7838 -4.2688 0.0009 8 6 2.1044 -4.8521 -1.3511 9 6 3.3659 -5.3595 -1.6031 10 6 3.6629 -5.8958 -2.8422 11 6 2.6993 -5.9268 -3.8319 12 6 1.4330 -5.4188 -3.5815 13 8 0.4834 -5.4486 -4.5531 14 6 0.8581 -6.0173 -5.8094 15 6 -0.3321 -5.9627 -6.7693 16 6 0.0629 -6.5630 -8.0938 17 1 1.0630 -6.9448 -8.2369 18 6 -0.8521 -6.6237 -9.1234 19 7 -2.0698 -6.1583 -8.9494 20 14 -0.3622 -7.3672 -10.7657 21 1 -0.6501 -8.8240 -10.7552 22 1 -1.1363 -6.7175 -11.8538 23 1 1.0892 -7.1511 -10.9936 24 6 1.1363 -4.8847 -2.3357 25 6 1.5766 -2.1834 -1.2112 26 6 2.0409 -0.7257 -1.2479 27 1 -0.3633 0.5114 0.8915 28 1 -0.3633 0.5163 -0.8886 29 1 -0.3633 -1.0276 -0.0029 30 1 3.1327 1.4395 -0.0028 31 1 1.6780 1.9568 -0.8886 32 1 1.6826 1.9552 0.8914 33 1 1.6458 -0.2388 2.1394 34 1 3.1310 -0.6905 1.2678 35 1 1.9527 -2.7053 2.0921 36 1 0.4880 -2.2170 1.2066 37 1 2.3811 -4.7689 0.7633 38 1 0.7251 -4.4123 0.2168 39 1 4.1203 -5.3368 -0.8307 40 1 4.6490 -6.2910 -3.0367 41 1 2.9318 -6.3462 -4.7996 42 1 1.6900 -5.4524 -6.2302 43 1 1.1602 -7.0543 -5.6631 44 1 -1.1643 -6.5273 -6.3487 45 1 -0.6337 -4.9255 -6.9154 46 1 -2.7136 -6.2015 -9.6736 47 1 0.1498 -4.4927 -2.1368 48 1 1.9513 -2.7062 -2.0912 49 1 0.4871 -2.2174 -1.2050 50 1 3.1302 -0.6911 -1.2678 51 1 1.6450 -0.2400 -2.1397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353438503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:29 Heat of formation + Delta-G solvation = -35.837117 kcal Electronic energy + Delta-G solvation = -26572.725484 eV Core-core repulsion = 23050.084845 eV Total energy + Delta-G solvation = -3522.640640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.33443 -39.46434 -37.44434 -35.38908 -33.38920 -31.67593 -30.87811 -30.79159 -29.24936 -28.33412 -27.56314 -25.41944 -24.76125 -23.40300 -22.30001 -22.09885 -21.26019 -20.08064 -18.50201 -17.54090 -16.26748 -16.13973 -15.73124 -15.63624 -15.29480 -15.14275 -14.88259 -14.81074 -14.51261 -14.34649 -14.09328 -13.60356 -13.01449 -12.88264 -12.76091 -12.53097 -12.32922 -12.26478 -12.15760 -11.97951 -11.85957 -11.75724 -11.35881 -11.33657 -11.30116 -11.19999 -10.88165 -10.76131 -10.69131 -10.47576 -10.40372 -10.27539 -9.86662 -9.66989 -9.31370 -8.76089 -8.46322 -8.31296 -7.84054 -6.11624 -4.16324 1.41871 1.69528 3.26482 3.32452 3.35277 3.66772 3.82152 4.11687 4.39525 4.44754 4.53943 4.58131 4.73150 4.96886 5.04974 5.08251 5.16645 5.21927 5.23549 5.24840 5.32085 5.38782 5.43314 5.46812 5.50493 5.52500 5.56175 5.61428 5.65902 5.68860 5.79951 5.81613 5.84293 5.86517 6.02382 6.03060 6.05569 6.09013 6.11560 6.17706 6.26768 6.54259 6.55777 6.71228 6.72369 6.92315 6.94525 7.03040 7.49338 7.62534 7.80218 8.05291 8.22585 8.89285 9.48096 10.99982 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.002466 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.435926 B =11353.249949 C =12361.055451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.103 4.103 5 C 0.053 3.947 6 N -0.530 5.530 7 C 0.097 3.903 8 C -0.050 4.050 9 C -0.150 4.150 10 C -0.081 4.081 11 C -0.210 4.210 12 C 0.145 3.855 13 O -0.316 6.316 14 C 0.066 3.934 15 C 0.026 3.974 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.157 4.157 25 C 0.048 3.952 26 C -0.105 4.105 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.263 0.737 47 H 0.123 0.877 48 H 0.086 0.914 49 H 0.036 0.964 50 H 0.069 0.931 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.646 10.035 22.053 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 C -0.197 4.197 4 C -0.141 4.141 5 C -0.075 4.075 6 N -0.254 5.254 7 C -0.030 4.030 8 C -0.050 4.050 9 C -0.169 4.169 10 C -0.099 4.099 11 C -0.229 4.229 12 C 0.098 3.902 13 O -0.230 6.230 14 C -0.008 4.008 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.176 4.176 25 C -0.080 4.080 26 C -0.143 4.143 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.141 0.859 48 H 0.104 0.896 49 H 0.054 0.946 50 H 0.088 0.912 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.761 10.189 21.956 26.099 hybrid contribution -0.531 -0.646 -1.128 1.404 sum 9.230 9.543 20.828 24.699 Atomic orbital electron populations 1.21978 0.94842 1.01878 1.01595 1.20608 0.95426 0.95166 0.95654 1.21839 1.00944 0.95339 1.01564 1.21621 1.01436 0.94008 0.97003 1.22128 0.97448 0.95099 0.92800 1.62068 1.59573 1.01515 1.02282 1.21038 0.99369 0.88172 0.94413 1.19367 0.93572 0.97667 0.94436 1.20760 0.96204 1.02489 0.97438 1.20899 0.98527 0.97634 0.92829 1.21399 0.93718 1.06505 1.01316 1.19131 0.88267 0.93561 0.89269 1.86167 1.37264 1.76956 1.22581 1.23325 1.01508 0.95945 0.80060 1.19120 0.91759 0.98684 0.91597 1.20968 0.98370 1.40686 0.96441 0.92365 1.24992 0.94855 0.95306 0.99029 1.69975 1.04208 1.45624 1.32975 0.86488 0.78625 0.79271 0.83015 1.20479 1.21028 1.19747 1.20282 1.00305 1.05575 0.91461 1.22287 0.97475 0.94756 0.93462 1.21652 1.01395 0.94323 0.96914 0.92902 0.92601 0.92451 0.92644 0.92673 0.92882 0.91764 0.91139 0.90968 0.94623 0.89815 0.93987 0.86278 0.86161 0.85281 0.93145 0.93152 0.95442 0.95419 0.92693 0.85913 0.89608 0.94596 0.91221 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 7.90 37.16 0.29 -0.93 16 2 C -0.07 -0.57 0.78 -154.38 -0.12 -0.69 16 3 C -0.14 -1.03 8.49 37.15 0.32 -0.72 16 4 C -0.10 -0.81 4.88 -26.65 -0.13 -0.94 16 5 C 0.05 0.46 5.18 -3.84 -0.02 0.44 16 6 N -0.53 -5.49 4.80 -236.11 -1.13 -6.63 16 7 C 0.10 1.02 5.43 -4.97 -0.03 0.99 16 8 C -0.05 -0.64 4.11 -104.65 -0.43 -1.07 16 9 C -0.15 -1.86 9.70 -39.56 -0.38 -2.24 16 10 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 11 C -0.21 -3.29 9.04 -39.43 -0.36 -3.65 16 12 C 0.14 2.52 6.69 -39.22 -0.26 2.26 16 13 O -0.32 -6.54 10.14 -19.41 -0.20 -6.74 16 14 C 0.07 1.41 4.68 37.16 0.17 1.59 16 15 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 16 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 20 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.16 -2.36 7.75 -39.44 -0.31 -2.67 16 25 C 0.05 0.54 4.33 -3.83 -0.02 0.52 16 26 C -0.11 -1.04 4.88 -26.65 -0.13 -1.17 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.53 4.92 -51.93 -0.26 0.27 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 36 H 0.04 0.32 6.52 -51.93 -0.34 -0.02 16 37 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.04 0.44 8.02 -51.93 -0.42 0.02 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 42 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 43 H 0.05 1.03 7.66 -51.93 -0.40 0.64 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 48 H 0.09 1.15 5.65 -51.93 -0.29 0.85 16 49 H 0.04 0.42 6.51 -51.93 -0.34 0.08 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -29.54 392.11 -11.13 -40.67 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -9.07 Total: -1.08 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -2.36 Total: -22.62 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: -0.40 Total: -32.40 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.20 Total: -6.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.54 -11.13 -40.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353438503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.834 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds