Wall clock time and date at job start Tue Mar 31 2020 11:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.57832 * 2 1 4 4 C 1.53123 * 109.52198 * 120.16076 * 2 1 3 5 5 C 1.53039 * 109.31189 * 62.27073 * 4 2 1 6 6 N 1.46842 * 109.52266 * 59.15550 * 5 4 2 7 7 C 1.46910 * 110.99703 * 174.16402 * 6 5 4 8 8 C 1.50699 * 109.47168 * 170.00315 * 7 6 5 9 9 C 1.38285 * 119.97181 * 89.99720 * 8 7 6 10 10 C 1.38241 * 120.10928 * 179.97438 * 9 8 7 11 11 C 1.38169 * 120.05828 * 359.95907 * 10 9 8 12 12 C 1.38715 * 119.94194 * 0.02562 * 11 10 9 13 13 O 1.35895 * 120.05112 * 180.02562 * 12 11 10 14 14 C 1.42898 * 117.00560 * 359.97438 * 13 12 11 15 15 C 1.53002 * 109.47388 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47004 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00180 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99688 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00245 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47081 * 89.99786 * 20 18 16 22 22 H 1.48506 * 109.46990 * 209.99503 * 20 18 16 23 23 H 1.48496 * 109.47082 * 329.99656 * 20 18 16 24 24 C 1.38118 * 119.97179 * 269.72479 * 8 7 6 25 25 C 1.46849 * 111.20050 * 298.25785 * 6 5 4 26 26 C 1.53036 * 109.52274 * 61.74759 * 25 6 5 27 27 H 1.09006 * 109.46735 * 299.84068 * 1 2 3 28 28 H 1.09000 * 109.46901 * 59.83934 * 1 2 3 29 29 H 1.08994 * 109.47213 * 179.83872 * 1 2 3 30 30 H 1.08997 * 109.47583 * 180.15752 * 3 2 1 31 31 H 1.09002 * 109.47275 * 300.15983 * 3 2 1 32 32 H 1.09005 * 109.47239 * 60.15484 * 3 2 1 33 33 H 1.09002 * 109.50371 * 302.30623 * 4 2 1 34 34 H 1.09003 * 109.50070 * 182.22783 * 4 2 1 35 35 H 1.08995 * 109.46501 * 179.17754 * 5 4 2 36 36 H 1.09002 * 109.45552 * 299.15457 * 5 4 2 37 37 H 1.08999 * 109.46693 * 290.00367 * 7 6 5 38 38 H 1.09002 * 109.47019 * 49.99864 * 7 6 5 39 39 H 1.07998 * 119.94528 * 359.97438 * 9 8 7 40 40 H 1.08001 * 119.97186 * 179.97438 * 10 9 8 41 41 H 1.07999 * 120.02534 * 180.02562 * 11 10 9 42 42 H 1.09003 * 109.46918 * 300.00186 * 14 13 12 43 43 H 1.08998 * 109.47086 * 59.99764 * 14 13 12 44 44 H 1.09003 * 109.46947 * 299.99807 * 15 14 13 45 45 H 1.08997 * 109.47006 * 59.99849 * 15 14 13 46 46 H 0.96996 * 119.99940 * 180.02562 * 19 18 16 47 47 H 1.08005 * 120.02416 * 359.97438 * 24 8 7 48 48 H 1.09001 * 109.46071 * 181.75754 * 25 6 5 49 49 H 1.09002 * 109.46350 * 301.73871 * 25 6 5 50 50 H 1.09000 * 109.50390 * 60.75234 * 26 25 6 51 51 H 1.08997 * 109.50400 * 180.83976 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0427 1.4415 0.0000 4 6 2.0417 -0.7251 1.2478 5 6 1.5775 -2.1829 1.2121 6 7 2.0932 -2.8327 0.0005 7 6 1.7838 -4.2688 0.0009 8 6 2.1044 -4.8521 -1.3511 9 6 3.3659 -5.3595 -1.6031 10 6 3.6629 -5.8958 -2.8422 11 6 2.6993 -5.9268 -3.8319 12 6 1.4330 -5.4188 -3.5815 13 8 0.4834 -5.4486 -4.5531 14 6 0.8581 -6.0173 -5.8094 15 6 -0.3321 -5.9627 -6.7693 16 6 0.0629 -6.5630 -8.0938 17 1 1.0630 -6.9448 -8.2369 18 6 -0.8521 -6.6237 -9.1234 19 7 -2.0698 -6.1583 -8.9494 20 14 -0.3622 -7.3672 -10.7657 21 1 -0.6501 -8.8240 -10.7552 22 1 -1.1363 -6.7175 -11.8538 23 1 1.0892 -7.1511 -10.9936 24 6 1.1363 -4.8847 -2.3357 25 6 1.5766 -2.1834 -1.2112 26 6 2.0409 -0.7257 -1.2479 27 1 -0.3633 0.5114 0.8915 28 1 -0.3633 0.5163 -0.8886 29 1 -0.3633 -1.0276 -0.0029 30 1 3.1327 1.4395 -0.0028 31 1 1.6780 1.9568 -0.8886 32 1 1.6826 1.9552 0.8914 33 1 1.6458 -0.2388 2.1394 34 1 3.1310 -0.6905 1.2678 35 1 1.9527 -2.7053 2.0921 36 1 0.4880 -2.2170 1.2066 37 1 2.3811 -4.7689 0.7633 38 1 0.7251 -4.4123 0.2168 39 1 4.1203 -5.3368 -0.8307 40 1 4.6490 -6.2910 -3.0367 41 1 2.9318 -6.3462 -4.7996 42 1 1.6900 -5.4524 -6.2302 43 1 1.1602 -7.0543 -5.6631 44 1 -1.1643 -6.5273 -6.3487 45 1 -0.6337 -4.9255 -6.9154 46 1 -2.7136 -6.2015 -9.6736 47 1 0.1498 -4.4927 -2.1368 48 1 1.9513 -2.7062 -2.0912 49 1 0.4871 -2.2174 -1.2050 50 1 3.1302 -0.6911 -1.2678 51 1 1.6450 -0.2400 -2.1397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353438503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:28 Heat of formation + Delta-G solvation = -51.029381 kcal Electronic energy + Delta-G solvation = -26573.384270 eV Core-core repulsion = 23050.084845 eV Total energy + Delta-G solvation = -3523.299426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36492 -40.51508 -38.70015 -36.27564 -35.46888 -32.66581 -32.53041 -31.69633 -30.68777 -29.18582 -28.22179 -27.08072 -25.96836 -24.24499 -23.56872 -23.32775 -22.45399 -21.40232 -19.26264 -19.03996 -18.12002 -17.07836 -17.00126 -16.88952 -16.80551 -16.44905 -15.97561 -15.76920 -15.55843 -15.06085 -15.02489 -14.55123 -14.37149 -14.35033 -14.21266 -13.92622 -13.36548 -13.23228 -13.06162 -12.90843 -12.85022 -12.72715 -12.61894 -12.57016 -12.55105 -12.46334 -12.27038 -12.04999 -11.83122 -11.60865 -11.58869 -11.43094 -11.38100 -11.12002 -11.03625 -10.64133 -9.82986 -9.19653 -9.09179 -8.28652 -6.42612 0.30943 0.52970 1.39598 1.41971 1.53153 2.25096 2.49141 2.69074 3.05777 3.16455 3.68153 3.82545 3.83481 3.88616 3.89875 4.12879 4.19175 4.24172 4.31025 4.32731 4.34576 4.40732 4.47485 4.53468 4.55919 4.63660 4.67444 4.71139 4.78127 4.80463 4.82862 4.86371 4.95089 5.00324 5.06675 5.09073 5.13720 5.16309 5.29222 5.29837 5.38975 5.40295 5.43804 5.43884 5.51504 5.55951 5.63267 5.66614 5.88692 6.05399 6.08858 6.19620 6.55163 6.72165 7.27711 8.84615 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.002466 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.435926 B =11353.249949 C =12361.055451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.137 4.137 4 C -0.099 4.099 5 C 0.051 3.949 6 N -0.530 5.530 7 C 0.098 3.902 8 C -0.044 4.044 9 C -0.140 4.140 10 C -0.077 4.077 11 C -0.222 4.222 12 C 0.107 3.893 13 O -0.343 6.343 14 C 0.086 3.914 15 C 0.029 3.971 16 C -0.546 4.546 17 H 0.071 0.929 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.976 3.024 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.163 4.163 25 C 0.052 3.948 26 C -0.103 4.103 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.107 0.893 38 H 0.041 0.959 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.127 0.873 42 H 0.059 0.941 43 H 0.060 0.940 44 H -0.003 1.003 45 H -0.003 1.003 46 H 0.267 0.733 47 H 0.115 0.885 48 H 0.061 0.939 49 H 0.025 0.975 50 H 0.066 0.934 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.151 9.910 23.664 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.194 4.194 4 C -0.136 4.136 5 C -0.076 4.076 6 N -0.255 5.255 7 C -0.029 4.029 8 C -0.045 4.045 9 C -0.158 4.158 10 C -0.095 4.095 11 C -0.241 4.241 12 C 0.062 3.938 13 O -0.258 6.258 14 C 0.012 3.988 15 C -0.008 4.008 16 C -0.584 4.584 17 H 0.089 0.911 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.800 3.200 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.183 1.183 24 C -0.182 4.182 25 C -0.075 4.075 26 C -0.141 4.141 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.125 0.875 38 H 0.059 0.941 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.144 0.856 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.076 0.924 47 H 0.133 0.867 48 H 0.079 0.921 49 H 0.043 0.957 50 H 0.085 0.915 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.285 10.067 23.598 28.445 hybrid contribution -1.298 -0.554 -1.478 2.043 sum 10.987 9.513 22.120 26.467 Atomic orbital electron populations 1.21956 0.94999 1.01239 1.01905 1.20604 0.95243 0.95748 0.95111 1.21808 1.01077 0.94538 1.01962 1.21607 1.01382 0.93459 0.97173 1.22231 0.97368 0.95679 0.92359 1.62127 1.59482 1.01390 1.02462 1.21112 0.99892 0.88427 0.93440 1.19636 0.93247 0.96816 0.94787 1.21170 0.96351 1.00492 0.97793 1.21253 0.99138 0.96794 0.92290 1.21502 0.93582 1.06834 1.02142 1.19448 0.88766 0.96330 0.89302 1.86076 1.39046 1.77876 1.22803 1.22844 0.99082 0.96755 0.80161 1.18959 0.92841 0.96129 0.92910 1.21391 0.99075 1.40789 0.97132 0.91101 1.26056 0.94644 0.95551 1.03464 1.70122 1.05575 1.46885 1.34499 0.85279 0.78870 0.78476 0.77415 1.19475 1.20606 1.18280 1.20369 1.00821 1.05628 0.91383 1.22154 0.96692 0.95469 0.93225 1.21628 1.01118 0.93632 0.97725 0.91614 0.93281 0.93544 0.92391 0.93067 0.91732 0.90095 0.91185 0.89304 0.94931 0.87455 0.94070 0.83160 0.83075 0.85556 0.92309 0.92216 0.98427 0.98432 0.92409 0.86711 0.92055 0.95719 0.91488 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.90 71.98 0.57 -1.75 16 2 C -0.07 -1.03 0.78 -52.10 -0.04 -1.07 16 3 C -0.14 -1.80 8.49 71.98 0.61 -1.19 16 4 C -0.10 -1.32 4.88 30.65 0.15 -1.17 16 5 C 0.05 0.76 5.18 86.33 0.45 1.21 16 6 N -0.53 -10.12 4.80 -900.91 -4.32 -14.44 16 7 C 0.10 1.87 5.43 85.55 0.46 2.33 16 8 C -0.04 -1.08 4.11 -19.88 -0.08 -1.16 16 9 C -0.14 -3.06 9.70 22.28 0.22 -2.84 16 10 C -0.08 -1.84 10.04 22.25 0.22 -1.62 16 11 C -0.22 -6.89 9.04 22.37 0.20 -6.69 16 12 C 0.11 3.85 6.69 22.51 0.15 4.00 16 13 O -0.34 -15.08 10.14 -92.37 -0.94 -16.02 16 14 C 0.09 3.86 4.68 71.98 0.34 4.20 16 15 C 0.03 1.61 5.34 29.85 0.16 1.76 16 16 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 17 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 20 Si 0.98 43.76 29.54 68.60 2.03 45.79 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 C -0.16 -5.04 7.75 22.36 0.17 -4.87 16 25 C 0.05 1.19 4.33 86.32 0.37 1.56 16 26 C -0.10 -2.03 4.88 30.65 0.15 -1.88 16 27 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.84 4.92 -2.39 -0.01 0.83 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.07 8.12 -2.39 -0.02 1.05 16 36 H 0.03 0.52 6.52 -2.39 -0.02 0.51 16 37 H 0.11 1.58 8.08 -2.39 -0.02 1.56 16 38 H 0.04 0.80 8.02 -2.39 -0.02 0.78 16 39 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.13 3.91 6.30 -2.91 -0.02 3.89 16 42 H 0.06 2.49 7.66 -2.39 -0.02 2.48 16 43 H 0.06 2.52 7.66 -2.39 -0.02 2.51 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 46 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 47 H 0.11 3.62 8.06 -2.91 -0.02 3.60 16 48 H 0.06 1.69 5.65 -2.39 -0.01 1.67 16 49 H 0.02 0.61 6.51 -2.39 -0.02 0.59 16 50 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.18 392.11 2.72 -63.46 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.87 Total: 17.74 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 4.80 Total: -39.58 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -4.04 Total: -71.40 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.94 Total: -16.02 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -66.18 2.72 -63.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353438503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.428 kcal (2) G-P(sol) polarization free energy of solvation -66.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds