Wall clock time and date at job start Tue Mar 31 2020 12:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46852 * 2 1 4 4 C 1.52997 * 110.27780 * 59.29965 * 3 2 1 5 5 C 1.54596 * 110.30753 * 297.20753 * 3 2 1 6 6 C 1.55193 * 102.80285 * 219.05229 * 5 3 2 7 7 N 1.48528 * 103.23843 * 37.43506 * 6 5 3 8 8 C 1.46901 * 111.00420 * 200.25716 * 7 6 5 9 9 C 1.50706 * 109.47106 * 307.39559 * 8 7 6 10 10 C 1.38291 * 119.96871 * 89.99510 * 9 8 7 11 11 C 1.38239 * 120.10870 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05638 * 0.02562 * 11 10 9 13 13 C 1.38705 * 119.94599 * 359.97438 * 12 11 10 14 14 O 1.35897 * 120.05917 * 180.02562 * 13 12 11 15 15 C 1.42901 * 116.99941 * 0.02562 * 14 13 12 16 16 C 1.53003 * 109.47223 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46970 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00367 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99937 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99946 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46997 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47190 * 119.99914 * 21 19 17 24 24 H 1.48499 * 109.47215 * 239.99356 * 21 19 17 25 25 C 1.38116 * 119.97407 * 269.72393 * 9 8 7 26 26 C 1.47899 * 105.81992 * 320.77107 * 7 6 5 27 27 H 1.09002 * 109.46735 * 299.99968 * 1 2 3 28 28 H 1.09001 * 109.46907 * 60.00236 * 1 2 3 29 29 H 1.08999 * 109.46687 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46990 * 239.99583 * 2 1 3 31 31 H 1.09001 * 109.46907 * 119.99764 * 2 1 3 32 32 H 1.09002 * 109.47153 * 60.69859 * 4 3 2 33 33 H 1.09001 * 109.46832 * 300.70049 * 4 3 2 34 34 H 1.09004 * 109.47261 * 180.70031 * 4 3 2 35 35 H 1.09003 * 110.72626 * 337.38501 * 5 3 2 36 36 H 1.09002 * 110.72484 * 100.67678 * 5 3 2 37 37 H 1.09000 * 110.68283 * 278.98917 * 6 5 3 38 38 H 1.09003 * 110.78993 * 155.93559 * 6 5 3 39 39 H 1.09002 * 109.47105 * 67.39750 * 8 7 6 40 40 H 1.08997 * 109.47096 * 187.39894 * 8 7 6 41 41 H 1.07995 * 119.94644 * 359.97438 * 10 9 8 42 42 H 1.08000 * 119.97286 * 179.97438 * 11 10 9 43 43 H 1.08002 * 120.02875 * 179.97438 * 12 11 10 44 44 H 1.08997 * 109.47300 * 299.99771 * 15 14 13 45 45 H 1.09002 * 109.46755 * 60.00006 * 15 14 13 46 46 H 1.08997 * 109.47256 * 300.00362 * 16 15 14 47 47 H 1.09001 * 109.46700 * 60.00042 * 16 15 14 48 48 H 0.96997 * 120.00245 * 180.02562 * 20 19 17 49 49 H 1.08005 * 120.02726 * 359.97438 * 25 9 8 50 50 H 1.09004 * 109.91700 * 265.97528 * 26 7 6 51 51 H 1.09001 * 109.91801 * 144.68367 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5259 2.1866 1.2340 5 6 1.5938 2.1693 -1.2894 6 6 2.8372 3.0254 -1.6495 7 7 3.9749 2.1408 -1.2899 8 6 5.2075 2.9178 -1.1035 9 6 5.4453 3.7812 -2.3156 10 6 4.9212 5.0599 -2.3665 11 6 5.1380 5.8545 -3.4767 12 6 5.8786 5.3725 -4.5388 13 6 6.4054 4.0902 -4.4902 14 8 7.1347 3.6140 -5.5333 15 6 7.3201 4.4885 -6.6482 16 6 8.1603 3.7836 -7.7151 17 6 8.3563 4.7062 -8.8905 18 1 7.9245 5.6959 -8.8781 19 6 9.0861 4.2861 -9.9823 20 7 9.6115 3.0806 -9.9977 21 14 9.3285 5.4293 -11.4396 22 1 8.6414 6.7192 -11.1764 23 1 10.7794 5.6729 -11.6416 24 1 8.7570 4.8044 -12.6594 25 6 6.1911 3.2967 -3.3723 26 6 3.5794 1.4652 -0.0351 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.8892 1.6914 2.1345 33 1 0.4359 2.1835 1.2322 34 1 1.8863 3.2152 1.2145 35 1 1.3762 1.4521 -2.0809 36 1 0.7297 2.8046 -1.0948 37 1 2.8592 3.9403 -1.0574 38 1 2.8519 3.2574 -2.7144 39 1 5.1086 3.5499 -0.2209 40 1 6.0491 2.2379 -0.9710 41 1 4.3416 5.4384 -1.5375 42 1 4.7273 6.8527 -3.5143 43 1 6.0474 5.9935 -5.4062 44 1 6.3495 4.7544 -7.0668 45 1 7.8340 5.3918 -6.3197 46 1 9.1309 3.5180 -7.2963 47 1 7.6467 2.8800 -8.0436 48 1 10.1252 2.7852 -10.7656 49 1 6.6042 2.2997 -3.3301 50 1 3.9622 2.0197 0.8218 51 1 3.9661 0.4462 -0.0241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354105934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:44 Heat of formation + Delta-G solvation = -49.466152 kcal Electronic energy + Delta-G solvation = -26068.114432 eV Core-core repulsion = 22544.882794 eV Total energy + Delta-G solvation = -3523.231639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28928 -40.52237 -38.65266 -36.09001 -35.44856 -32.82008 -32.56856 -30.89549 -30.57545 -30.18642 -27.75147 -27.01465 -25.84329 -23.94026 -23.68465 -23.27446 -22.22871 -21.35609 -19.66280 -19.04802 -18.11300 -17.06074 -16.97779 -16.95304 -16.70222 -16.51427 -16.21521 -15.68200 -15.25819 -15.18519 -14.79827 -14.35361 -14.31799 -14.26444 -14.25160 -13.78244 -13.57322 -13.24089 -13.15117 -12.96074 -12.82402 -12.70426 -12.66137 -12.57826 -12.55322 -12.37860 -12.08490 -11.87570 -11.81500 -11.61687 -11.56390 -11.42311 -11.34849 -11.25625 -11.21513 -10.64127 -9.85865 -9.30650 -9.08755 -8.27810 -6.41736 0.32983 0.51748 1.40138 1.41361 1.54882 2.26224 2.50340 2.71795 3.06459 3.25049 3.53714 3.70811 3.85041 3.88464 3.91836 4.11601 4.20296 4.25200 4.26721 4.31718 4.34754 4.41613 4.45611 4.50240 4.52791 4.63677 4.70980 4.71794 4.72121 4.79808 4.82721 4.86610 4.93315 5.04874 5.08655 5.14720 5.19288 5.22234 5.26407 5.30181 5.32466 5.42472 5.44971 5.46724 5.50412 5.57917 5.59785 5.67554 5.88106 5.99366 6.06033 6.10330 6.56691 6.73238 7.28428 8.85612 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024484 B = 0.002048 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.338705 B =13667.192213 C =14079.398424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.067 4.067 4 C -0.136 4.136 5 C -0.111 4.111 6 C 0.038 3.962 7 N -0.528 5.528 8 C 0.092 3.908 9 C -0.043 4.043 10 C -0.151 4.151 11 C -0.076 4.076 12 C -0.222 4.222 13 C 0.107 3.893 14 O -0.343 6.343 15 C 0.086 3.914 16 C 0.028 3.972 17 C -0.545 4.545 18 H 0.071 0.929 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.978 3.022 22 H -0.257 1.257 23 H -0.276 1.276 24 H -0.277 1.277 25 C -0.153 4.153 26 C 0.043 3.957 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.127 0.873 44 H 0.059 0.941 45 H 0.060 0.940 46 H -0.002 1.002 47 H -0.003 1.003 48 H 0.267 0.733 49 H 0.119 0.881 50 H 0.055 0.945 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.948 0.884 25.870 32.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.068 4.068 4 C -0.193 4.193 5 C -0.149 4.149 6 C -0.089 4.089 7 N -0.253 5.253 8 C -0.035 4.035 9 C -0.044 4.044 10 C -0.170 4.170 11 C -0.094 4.094 12 C -0.241 4.241 13 C 0.062 3.938 14 O -0.258 6.258 15 C 0.011 3.989 16 C -0.010 4.010 17 C -0.583 4.583 18 H 0.089 0.911 19 C -0.199 4.199 20 N -0.570 5.570 21 Si 0.801 3.199 22 H -0.181 1.181 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.173 4.173 26 C -0.084 4.084 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.164 0.836 42 H 0.170 0.830 43 H 0.145 0.855 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.017 0.983 47 H 0.016 0.984 48 H 0.076 0.924 49 H 0.137 0.863 50 H 0.074 0.926 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.630 0.193 25.346 31.457 hybrid contribution 0.587 0.735 -0.744 1.199 sum -18.044 0.928 24.602 30.523 Atomic orbital electron populations 1.21827 0.95176 1.01745 1.02161 1.21553 0.96467 0.94728 1.01729 1.21410 0.93508 0.96153 0.95722 1.21919 1.01708 0.99504 0.96196 1.22656 0.96948 0.98432 0.96857 1.23250 0.90175 0.95013 1.00464 1.64836 1.02597 1.27057 1.30776 1.21203 0.94042 0.94867 0.93398 1.19623 0.95409 0.94714 0.94645 1.21167 1.02587 0.93673 0.99539 1.21199 0.95723 1.00497 0.91952 1.21492 1.04745 0.95506 1.02364 1.19505 0.92323 0.93672 0.88317 1.86086 1.68187 1.44638 1.26851 1.22849 0.99569 0.92451 0.84008 1.18974 0.93915 0.95882 0.92189 1.21421 1.34059 1.01054 1.01753 0.91074 1.26076 0.94789 0.97007 1.02011 1.70132 1.35359 1.19753 1.31787 0.85207 0.78135 0.78758 0.77770 1.18078 1.20180 1.20219 1.20379 1.04166 1.00128 0.92607 1.23078 0.95203 0.99783 0.90375 0.91724 0.92919 0.92730 0.92924 0.91473 0.91991 0.91361 0.92854 0.91834 0.89820 0.92589 0.92018 0.91777 0.89854 0.83601 0.83048 0.85525 0.92298 0.92179 0.98348 0.98442 0.92426 0.86251 0.92649 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.36 71.98 0.67 -0.92 16 2 C -0.11 -1.32 4.66 30.60 0.14 -1.18 16 3 C -0.07 -0.85 0.69 -51.30 -0.04 -0.89 16 4 C -0.14 -1.29 7.85 71.98 0.57 -0.73 16 5 C -0.11 -1.64 5.17 31.89 0.16 -1.48 16 6 C 0.04 0.69 4.98 86.74 0.43 1.12 16 7 N -0.53 -10.50 5.39 -887.03 -4.78 -15.28 16 8 C 0.09 1.81 5.19 85.56 0.44 2.26 16 9 C -0.04 -1.07 4.59 -19.88 -0.09 -1.16 16 10 C -0.15 -3.24 8.33 22.28 0.19 -3.06 16 11 C -0.08 -1.80 10.04 22.25 0.22 -1.58 16 12 C -0.22 -6.94 9.04 22.37 0.20 -6.74 16 13 C 0.11 3.94 6.69 22.51 0.15 4.09 16 14 O -0.34 -15.31 10.14 -92.39 -0.94 -16.24 16 15 C 0.09 3.88 4.68 71.98 0.34 4.22 16 16 C 0.03 1.55 5.34 29.85 0.16 1.71 16 17 C -0.55 -31.29 9.11 25.60 0.23 -31.06 16 18 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 19 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 20 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 21 Si 0.98 43.98 29.54 68.60 2.03 46.01 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 25 C -0.15 -4.93 9.64 22.36 0.22 -4.71 16 26 C 0.04 0.66 6.03 86.45 0.52 1.18 16 27 H 0.06 0.56 6.47 -2.39 -0.02 0.55 16 28 H 0.05 0.59 7.26 -2.39 -0.02 0.58 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.56 6.46 -2.39 -0.02 0.55 16 34 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.06 1.10 7.73 -2.39 -0.02 1.08 16 36 H 0.08 1.01 7.85 -2.39 -0.02 0.99 16 37 H 0.06 0.86 7.09 -2.39 -0.02 0.84 16 38 H 0.06 1.38 7.72 -2.39 -0.02 1.36 16 39 H 0.06 1.01 7.75 -2.39 -0.02 0.99 16 40 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 41 H 0.15 2.22 7.38 -2.91 -0.02 2.20 16 42 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.13 3.93 6.30 -2.91 -0.02 3.91 16 44 H 0.06 2.52 7.66 -2.39 -0.02 2.50 16 45 H 0.06 2.56 7.66 -2.39 -0.02 2.54 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 48 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 49 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 50 H 0.06 0.74 7.11 -2.39 -0.02 0.72 16 51 H 0.07 1.21 7.68 -2.39 -0.02 1.19 16 Total: -1.00 -67.39 395.87 2.45 -64.94 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.87 Total: 16.20 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 4.99 Total: -38.48 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -4.50 Total: -72.42 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.94 Total: -16.24 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -67.39 2.45 -64.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354105934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.472 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds