Wall clock time and date at job start Tue Mar 31 2020 12:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53003 * 110.28804 * 300.70440 * 3 2 1 5 5 C 1.54264 * 110.32473 * 62.82727 * 3 2 1 6 6 C 1.54381 * 105.05825 * 118.89532 * 5 3 2 7 7 N 1.48563 * 104.59375 * 23.85935 * 6 5 3 8 8 C 1.46903 * 110.99722 * 200.96072 * 7 6 5 9 9 C 1.50707 * 109.46889 * 290.12261 * 8 7 6 10 10 C 1.38284 * 119.97193 * 90.00061 * 9 8 7 11 11 C 1.38248 * 120.10974 * 180.02562 * 10 9 8 12 12 C 1.38158 * 120.05592 * 0.02562 * 11 10 9 13 13 C 1.38712 * 119.94693 * 359.97438 * 12 11 10 14 14 O 1.35899 * 120.05847 * 180.02562 * 13 12 11 15 15 C 1.42897 * 117.00060 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47663 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47427 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00211 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00047 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00060 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47535 * 60.00110 * 21 19 17 23 23 H 1.48505 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47461 * 299.99719 * 21 19 17 25 25 C 1.38118 * 119.97127 * 269.72607 * 9 8 7 26 26 C 1.48722 * 104.28453 * 320.56650 * 7 6 5 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47065 * 59.30012 * 4 3 2 33 33 H 1.09000 * 109.47052 * 179.29484 * 4 3 2 34 34 H 1.09004 * 109.47119 * 299.29638 * 4 3 2 35 35 H 1.08994 * 110.32520 * 237.79347 * 5 3 2 36 36 H 1.09002 * 110.32431 * 359.90375 * 5 3 2 37 37 H 1.09002 * 110.40677 * 142.63367 * 6 5 3 38 38 H 1.09001 * 110.41504 * 264.95568 * 6 5 3 39 39 H 1.08995 * 109.47299 * 50.12026 * 8 7 6 40 40 H 1.09002 * 109.47389 * 170.12541 * 8 7 6 41 41 H 1.08000 * 119.94720 * 359.97438 * 10 9 8 42 42 H 1.07998 * 119.97030 * 179.97438 * 11 10 9 43 43 H 1.08003 * 120.02487 * 180.02562 * 12 11 10 44 44 H 1.09010 * 109.47238 * 300.00750 * 15 14 13 45 45 H 1.09005 * 109.47194 * 60.00074 * 15 14 13 46 46 H 1.08997 * 109.46951 * 300.00604 * 16 15 14 47 47 H 1.09005 * 109.47000 * 59.99655 * 16 15 14 48 48 H 0.96995 * 119.99744 * 179.97438 * 20 19 17 49 49 H 1.08004 * 120.02889 * 0.02562 * 25 9 8 50 50 H 1.08997 * 110.39348 * 280.64233 * 26 7 6 51 51 H 1.09011 * 110.50297 * 158.14936 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5259 2.1869 -1.2339 5 6 1.5957 2.1679 1.2869 6 6 2.9079 2.5682 1.9950 7 7 3.9184 2.6233 0.9074 8 6 5.2793 2.5001 1.4465 9 6 5.6307 3.7488 2.2138 10 6 5.3511 3.8306 3.5656 11 6 5.6716 4.9749 4.2720 12 6 6.2719 6.0400 3.6285 13 6 6.5534 5.9604 2.2726 14 8 7.1443 7.0065 1.6375 15 6 7.4477 8.1577 2.4278 16 6 8.1032 9.2230 1.5468 17 6 8.4237 10.4368 2.3804 18 1 8.1835 10.4476 3.4332 19 6 9.0237 11.5336 1.7989 20 7 9.3158 11.5207 0.5167 21 14 9.4216 13.0379 2.8324 22 1 10.3531 12.6562 3.9241 23 1 10.0578 14.0719 1.9771 24 1 8.1698 13.5819 3.4174 25 6 6.2368 4.8082 1.5673 26 6 3.5832 1.4657 0.0360 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 0.4359 2.1839 -1.2322 33 1 1.8864 3.2154 -1.2141 34 1 1.8892 1.6918 -2.1345 35 1 1.0131 3.0551 1.0395 36 1 1.0129 1.4967 1.9179 37 1 2.8027 3.5456 2.4660 38 1 3.1844 1.8179 2.7357 39 1 5.3298 1.6384 2.1122 40 1 5.9846 2.3673 0.6261 41 1 4.8807 2.9996 4.0701 42 1 5.4519 5.0366 5.3276 43 1 6.5225 6.9336 4.1810 44 1 6.5283 8.5567 2.8566 45 1 8.1310 7.8782 3.2297 46 1 9.0224 8.8243 1.1177 47 1 7.4196 9.5025 0.7451 48 1 9.7376 12.2924 0.1076 49 1 6.4586 4.7422 0.5123 50 1 3.9673 0.5415 0.4678 51 1 3.9847 1.6136 -0.9666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354105938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:48 Heat of formation + Delta-G solvation = -33.831513 kcal Electronic energy + Delta-G solvation = -25983.447290 eV Core-core repulsion = 22460.893620 eV Total energy + Delta-G solvation = -3522.553670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.20308 -39.49311 -37.36165 -35.30562 -33.35877 -31.95015 -30.79657 -29.87971 -29.78385 -29.08220 -26.87559 -25.40587 -24.71299 -23.36930 -22.45019 -21.73343 -21.17243 -20.12229 -18.91807 -17.53857 -16.25963 -16.07090 -16.02357 -15.60785 -15.47848 -15.26401 -14.89138 -14.56263 -14.45221 -14.01786 -13.92008 -13.76883 -13.27786 -13.03523 -12.75936 -12.60793 -12.32165 -12.28877 -12.23244 -12.03261 -11.69228 -11.62575 -11.40678 -11.34812 -11.22832 -11.15102 -10.86310 -10.80840 -10.71199 -10.66234 -10.65827 -10.38954 -9.83052 -9.64140 -9.29647 -8.78402 -8.55140 -8.43054 -7.79854 -6.08789 -4.13487 1.48923 1.71478 3.29578 3.33870 3.35658 3.70292 3.86436 4.12692 4.23783 4.36204 4.42332 4.52767 4.77348 4.88271 4.92566 4.96399 5.00914 5.07353 5.13219 5.27366 5.27662 5.31251 5.31976 5.38116 5.39431 5.48672 5.54820 5.56305 5.58917 5.64294 5.73500 5.76910 5.79724 5.86450 5.88012 5.92012 6.04492 6.05961 6.09224 6.15441 6.22759 6.58125 6.60282 6.60700 6.75413 6.76280 6.82862 7.03116 7.52763 7.66205 7.83398 8.09775 8.25632 8.91858 9.50570 11.02730 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.002035 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.340925 B =13753.274339 C =14250.739541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.065 4.065 4 C -0.136 4.136 5 C -0.117 4.117 6 C 0.034 3.966 7 N -0.501 5.501 8 C 0.087 3.913 9 C -0.044 4.044 10 C -0.166 4.166 11 C -0.081 4.081 12 C -0.212 4.212 13 C 0.145 3.855 14 O -0.315 6.315 15 C 0.066 3.934 16 C 0.025 3.975 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.140 4.140 26 C 0.040 3.960 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.044 0.956 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.264 0.736 49 H 0.127 0.873 50 H 0.043 0.957 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.882 -24.901 1.698 29.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.065 4.065 4 C -0.193 4.193 5 C -0.155 4.155 6 C -0.094 4.094 7 N -0.224 5.224 8 C -0.041 4.041 9 C -0.044 4.044 10 C -0.185 4.185 11 C -0.099 4.099 12 C -0.231 4.231 13 C 0.098 3.902 14 O -0.229 6.229 15 C -0.009 4.009 16 C -0.012 4.012 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.159 4.159 26 C -0.088 4.088 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.145 0.855 50 H 0.061 0.939 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.736 -24.245 1.044 28.923 hybrid contribution 0.368 0.243 1.291 1.364 sum -15.368 -24.002 2.335 28.595 Atomic orbital electron populations 1.21859 0.95700 1.01398 1.02227 1.21595 0.96135 0.95385 1.01768 1.21305 0.94189 0.95004 0.96021 1.21887 1.00623 1.00751 0.96079 1.22494 0.97026 1.00240 0.95716 1.23138 0.91609 1.01302 0.93336 1.65441 1.01385 1.39754 1.15861 1.21160 0.91091 0.94013 0.97798 1.19295 0.97177 0.94681 0.93289 1.20747 1.05096 0.98681 0.93931 1.20825 0.97014 0.92779 0.99270 1.21372 1.06262 1.01104 0.94372 1.19189 0.91623 0.88440 0.90916 1.86174 1.73178 1.24027 1.39479 1.23319 0.98820 0.83390 0.95321 1.19119 0.96278 0.90551 0.95234 1.20935 1.40786 0.99285 0.95518 0.92435 1.24993 0.95436 0.98732 0.95046 1.69969 1.41638 1.30628 1.10489 0.86543 0.78678 0.82101 0.80010 1.20111 1.21113 1.20107 1.20242 1.03830 0.91603 1.00241 1.23273 0.94870 0.92118 0.98532 0.93008 0.92523 0.92285 0.92217 0.91914 0.92554 0.91728 0.92880 0.90883 0.91268 0.89879 0.94088 0.93780 0.89768 0.86965 0.86322 0.85334 0.93179 0.93192 0.95404 0.95378 0.92659 0.85455 0.93878 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.34 37.16 0.35 -0.52 16 2 C -0.11 -0.69 4.76 -26.73 -0.13 -0.82 16 3 C -0.06 -0.48 0.76 -153.13 -0.12 -0.60 16 4 C -0.14 -1.04 7.87 37.16 0.29 -0.74 16 5 C -0.12 -0.93 5.77 -25.35 -0.15 -1.07 16 6 C 0.03 0.32 5.47 -2.18 -0.01 0.31 16 7 N -0.50 -5.25 5.36 -231.26 -1.24 -6.49 16 8 C 0.09 0.92 4.97 -4.97 -0.02 0.90 16 9 C -0.04 -0.58 5.10 -104.65 -0.53 -1.11 16 10 C -0.17 -2.06 8.73 -39.56 -0.35 -2.40 16 11 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 12 C -0.21 -3.41 9.04 -39.44 -0.36 -3.76 16 13 C 0.15 2.61 6.69 -39.21 -0.26 2.35 16 14 O -0.32 -6.69 10.14 -19.42 -0.20 -6.88 16 15 C 0.07 1.44 4.68 37.16 0.17 1.61 16 16 C 0.03 0.67 5.34 -27.89 -0.15 0.53 16 17 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 21 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.14 -2.21 9.64 -39.43 -0.38 -2.59 16 26 C 0.04 0.34 5.60 -2.09 -0.01 0.33 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.32 6.68 -51.93 -0.35 -0.03 16 29 H 0.06 0.33 6.47 -51.93 -0.34 0.00 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 6.46 -51.93 -0.34 0.05 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.62 7.71 -51.93 -0.40 0.22 16 36 H 0.07 0.48 6.59 -51.93 -0.34 0.13 16 37 H 0.08 0.89 7.81 -51.93 -0.41 0.49 16 38 H 0.04 0.36 7.83 -51.93 -0.41 -0.05 16 39 H 0.04 0.42 7.83 -51.93 -0.41 0.01 16 40 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 41 H 0.11 1.14 8.05 -52.49 -0.42 0.72 16 42 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.13 2.03 6.30 -52.48 -0.33 1.70 16 44 H 0.05 1.05 7.66 -51.92 -0.40 0.65 16 45 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 50 H 0.04 0.34 7.72 -51.93 -0.40 -0.06 16 51 H 0.08 0.71 7.86 -51.92 -0.41 0.30 16 LS Contribution 397.85 15.07 6.00 6.00 Total: -1.00 -30.15 397.85 -11.29 -41.44 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -9.10 Total: -1.94 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -2.46 Total: -22.60 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: -0.50 Total: -32.40 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.20 Total: -6.88 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.15 -11.29 -41.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354105938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.607 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds