Wall clock time and date at job start Tue Mar 31 2020 12:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53003 * 110.28804 * 300.70440 * 3 2 1 5 5 C 1.54264 * 110.32473 * 62.82727 * 3 2 1 6 6 C 1.54381 * 105.05825 * 118.89532 * 5 3 2 7 7 N 1.48563 * 104.59375 * 23.85935 * 6 5 3 8 8 C 1.46903 * 110.99722 * 200.96072 * 7 6 5 9 9 C 1.50707 * 109.46889 * 290.12261 * 8 7 6 10 10 C 1.38284 * 119.97193 * 90.00061 * 9 8 7 11 11 C 1.38248 * 120.10974 * 180.02562 * 10 9 8 12 12 C 1.38158 * 120.05592 * 0.02562 * 11 10 9 13 13 C 1.38712 * 119.94693 * 359.97438 * 12 11 10 14 14 O 1.35899 * 120.05847 * 180.02562 * 13 12 11 15 15 C 1.42897 * 117.00060 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47663 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47427 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00211 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00047 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00060 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47535 * 60.00110 * 21 19 17 23 23 H 1.48505 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47461 * 299.99719 * 21 19 17 25 25 C 1.38118 * 119.97127 * 269.72607 * 9 8 7 26 26 C 1.48722 * 104.28453 * 320.56650 * 7 6 5 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47065 * 59.30012 * 4 3 2 33 33 H 1.09000 * 109.47052 * 179.29484 * 4 3 2 34 34 H 1.09004 * 109.47119 * 299.29638 * 4 3 2 35 35 H 1.08994 * 110.32520 * 237.79347 * 5 3 2 36 36 H 1.09002 * 110.32431 * 359.90375 * 5 3 2 37 37 H 1.09002 * 110.40677 * 142.63367 * 6 5 3 38 38 H 1.09001 * 110.41504 * 264.95568 * 6 5 3 39 39 H 1.08995 * 109.47299 * 50.12026 * 8 7 6 40 40 H 1.09002 * 109.47389 * 170.12541 * 8 7 6 41 41 H 1.08000 * 119.94720 * 359.97438 * 10 9 8 42 42 H 1.07998 * 119.97030 * 179.97438 * 11 10 9 43 43 H 1.08003 * 120.02487 * 180.02562 * 12 11 10 44 44 H 1.09010 * 109.47238 * 300.00750 * 15 14 13 45 45 H 1.09005 * 109.47194 * 60.00074 * 15 14 13 46 46 H 1.08997 * 109.46951 * 300.00604 * 16 15 14 47 47 H 1.09005 * 109.47000 * 59.99655 * 16 15 14 48 48 H 0.96995 * 119.99744 * 179.97438 * 20 19 17 49 49 H 1.08004 * 120.02889 * 0.02562 * 25 9 8 50 50 H 1.08997 * 110.39348 * 280.64233 * 26 7 6 51 51 H 1.09011 * 110.50297 * 158.14936 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5259 2.1869 -1.2339 5 6 1.5957 2.1679 1.2869 6 6 2.9079 2.5682 1.9950 7 7 3.9184 2.6233 0.9074 8 6 5.2793 2.5001 1.4465 9 6 5.6307 3.7488 2.2138 10 6 5.3511 3.8306 3.5656 11 6 5.6716 4.9749 4.2720 12 6 6.2719 6.0400 3.6285 13 6 6.5534 5.9604 2.2726 14 8 7.1443 7.0065 1.6375 15 6 7.4477 8.1577 2.4278 16 6 8.1032 9.2230 1.5468 17 6 8.4237 10.4368 2.3804 18 1 8.1835 10.4476 3.4332 19 6 9.0237 11.5336 1.7989 20 7 9.3158 11.5207 0.5167 21 14 9.4216 13.0379 2.8324 22 1 10.3531 12.6562 3.9241 23 1 10.0578 14.0719 1.9771 24 1 8.1698 13.5819 3.4174 25 6 6.2368 4.8082 1.5673 26 6 3.5832 1.4657 0.0360 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 0.4359 2.1839 -1.2322 33 1 1.8864 3.2154 -1.2141 34 1 1.8892 1.6918 -2.1345 35 1 1.0131 3.0551 1.0395 36 1 1.0129 1.4967 1.9179 37 1 2.8027 3.5456 2.4660 38 1 3.1844 1.8179 2.7357 39 1 5.3298 1.6384 2.1122 40 1 5.9846 2.3673 0.6261 41 1 4.8807 2.9996 4.0701 42 1 5.4519 5.0366 5.3276 43 1 6.5225 6.9336 4.1810 44 1 6.5283 8.5567 2.8566 45 1 8.1310 7.8782 3.2297 46 1 9.0224 8.8243 1.1177 47 1 7.4196 9.5025 0.7451 48 1 9.7376 12.2924 0.1076 49 1 6.4586 4.7422 0.5123 50 1 3.9673 0.5415 0.4678 51 1 3.9847 1.6136 -0.9666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354105938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:47 Heat of formation + Delta-G solvation = -49.726372 kcal Electronic energy + Delta-G solvation = -25984.136543 eV Core-core repulsion = 22460.893620 eV Total energy + Delta-G solvation = -3523.242923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21573 -40.49781 -38.64097 -36.10028 -35.44732 -32.84114 -32.56812 -30.85230 -30.51474 -30.27540 -27.66853 -27.00420 -25.87844 -23.97078 -23.67129 -23.23498 -22.17945 -21.40112 -19.59712 -19.02569 -18.10929 -17.04744 -16.97054 -16.91073 -16.69509 -16.61788 -16.32102 -15.62961 -15.25043 -14.81913 -14.60701 -14.60060 -14.36977 -14.32881 -14.23687 -13.95848 -13.78358 -13.18462 -13.04215 -12.86710 -12.82139 -12.68928 -12.61931 -12.57171 -12.37707 -12.29435 -12.18081 -11.84885 -11.83988 -11.60669 -11.57810 -11.42127 -11.29950 -11.26234 -11.24333 -10.62227 -9.83108 -9.38225 -9.07928 -8.27095 -6.41237 0.35182 0.53300 1.40229 1.44534 1.52538 2.26836 2.50936 2.72497 3.06937 3.25314 3.58220 3.69913 3.87291 3.91181 3.96270 4.12950 4.21215 4.25367 4.26844 4.30140 4.33620 4.41347 4.42846 4.53546 4.53847 4.65561 4.68749 4.72224 4.74831 4.81430 4.83273 4.89851 4.94616 5.01115 5.09916 5.15314 5.19234 5.23556 5.25262 5.30283 5.32213 5.43851 5.45243 5.50872 5.51680 5.57073 5.62147 5.67830 5.89191 5.97468 6.06242 6.09104 6.57545 6.73176 7.28774 8.85857 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.002035 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.340925 B =13753.274339 C =14250.739541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.062 4.062 4 C -0.134 4.134 5 C -0.114 4.114 6 C 0.034 3.966 7 N -0.523 5.523 8 C 0.090 3.910 9 C -0.038 4.038 10 C -0.152 4.152 11 C -0.077 4.077 12 C -0.224 4.224 13 C 0.107 3.893 14 O -0.343 6.343 15 C 0.086 3.914 16 C 0.028 3.972 17 C -0.548 4.548 18 H 0.071 0.929 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.978 3.022 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.264 1.264 25 C -0.154 4.154 26 C 0.041 3.959 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.126 0.874 44 H 0.058 0.942 45 H 0.060 0.940 46 H -0.002 1.002 47 H -0.003 1.003 48 H 0.267 0.733 49 H 0.119 0.881 50 H 0.055 0.945 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.176 -26.709 4.035 32.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.062 4.062 4 C -0.191 4.191 5 C -0.152 4.152 6 C -0.094 4.094 7 N -0.247 5.247 8 C -0.037 4.037 9 C -0.039 4.039 10 C -0.170 4.170 11 C -0.095 4.095 12 C -0.242 4.242 13 C 0.061 3.939 14 O -0.258 6.258 15 C 0.011 3.989 16 C -0.009 4.009 17 C -0.585 4.585 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.570 5.570 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.188 1.188 25 C -0.173 4.173 26 C -0.087 4.087 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.144 0.856 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.017 0.983 47 H 0.015 0.985 48 H 0.076 0.924 49 H 0.137 0.863 50 H 0.073 0.927 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.047 -26.083 3.389 31.343 hybrid contribution 0.696 0.654 0.521 1.088 sum -16.351 -25.429 3.910 30.484 Atomic orbital electron populations 1.21851 0.95250 1.01861 1.02150 1.21555 0.96458 0.94211 1.02173 1.21294 0.93503 0.95876 0.95554 1.21858 1.01094 0.99552 0.96612 1.22477 0.96438 1.00218 0.96031 1.23134 0.91995 1.00824 0.93418 1.65388 1.01408 1.41195 1.16659 1.21150 0.91392 0.93196 0.98004 1.19607 0.95667 0.94631 0.94000 1.21156 1.03265 0.99148 0.93458 1.21200 0.95550 0.91913 1.00807 1.21483 1.07023 1.02193 0.93551 1.19511 0.93825 0.88274 0.92264 1.86083 1.74718 1.24718 1.40247 1.22846 0.98894 0.83022 0.94111 1.18965 0.94610 0.92180 0.95159 1.21364 1.40942 0.99925 0.96302 0.91088 1.26070 0.94973 1.02411 0.96338 1.70121 1.42420 1.31842 1.12584 0.85315 0.78950 0.77426 0.78232 1.18778 1.20718 1.18838 1.20376 1.04777 0.92007 1.00149 1.23295 0.95580 0.91831 0.97947 0.92292 0.92499 0.92484 0.91735 0.91585 0.91795 0.93851 0.92438 0.91846 0.89772 0.91518 0.92692 0.91676 0.89800 0.83602 0.83120 0.85581 0.92362 0.92193 0.98345 0.98452 0.92423 0.86269 0.92695 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.34 71.98 0.67 -0.71 16 2 C -0.11 -1.06 4.76 30.59 0.15 -0.91 16 3 C -0.06 -0.81 0.76 -51.29 -0.04 -0.85 16 4 C -0.13 -1.94 7.87 71.98 0.57 -1.37 16 5 C -0.11 -1.60 5.77 31.49 0.18 -1.41 16 6 C 0.03 0.57 5.47 86.45 0.47 1.04 16 7 N -0.52 -10.19 5.36 -885.56 -4.75 -14.94 16 8 C 0.09 1.75 4.97 85.56 0.43 2.17 16 9 C -0.04 -0.96 5.10 -19.88 -0.10 -1.06 16 10 C -0.15 -3.32 8.73 22.28 0.19 -3.12 16 11 C -0.08 -1.86 10.04 22.25 0.22 -1.64 16 12 C -0.22 -7.09 9.04 22.36 0.20 -6.89 16 13 C 0.11 3.95 6.69 22.51 0.15 4.10 16 14 O -0.34 -15.39 10.14 -92.42 -0.94 -16.33 16 15 C 0.09 3.91 4.68 71.98 0.34 4.24 16 16 C 0.03 1.58 5.34 29.85 0.16 1.74 16 17 C -0.55 -31.51 9.11 25.60 0.23 -31.28 16 18 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 19 C 0.00 0.04 5.46 84.65 0.46 0.50 16 20 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 21 Si 0.98 43.99 29.54 68.60 2.03 46.02 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 25 C -0.15 -4.97 9.64 22.37 0.22 -4.75 16 26 C 0.04 0.63 5.60 86.42 0.48 1.11 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.51 6.68 -2.39 -0.02 0.49 16 29 H 0.06 0.54 6.47 -2.39 -0.02 0.52 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.81 6.46 -2.39 -0.02 0.80 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 1.01 7.71 -2.39 -0.02 0.99 16 36 H 0.08 0.93 6.59 -2.39 -0.02 0.91 16 37 H 0.07 1.33 7.81 -2.39 -0.02 1.31 16 38 H 0.05 0.76 7.83 -2.39 -0.02 0.74 16 39 H 0.07 1.00 7.83 -2.39 -0.02 0.98 16 40 H 0.08 1.62 8.07 -2.39 -0.02 1.60 16 41 H 0.15 2.26 8.05 -2.91 -0.02 2.24 16 42 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 43 H 0.13 3.97 6.30 -2.91 -0.02 3.95 16 44 H 0.06 2.51 7.66 -2.38 -0.02 2.49 16 45 H 0.06 2.57 7.66 -2.38 -0.02 2.55 16 46 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 47 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 48 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 49 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 50 H 0.05 0.72 7.72 -2.39 -0.02 0.70 16 51 H 0.08 1.25 7.86 -2.38 -0.02 1.23 16 Total: -1.00 -67.58 397.85 2.49 -65.09 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.87 Total: 16.42 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 4.99 Total: -39.09 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -4.46 Total: -72.11 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.94 Total: -16.33 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.58 2.49 -65.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354105938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.364 kcal (2) G-P(sol) polarization free energy of solvation -67.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds