Wall clock time and date at job start Tue Mar 31 2020 11:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86792 * 120.00140 * 2 1 4 4 H 1.48499 * 109.47450 * 274.98510 * 3 2 1 5 5 H 1.48499 * 109.47559 * 34.98500 * 3 2 1 6 6 H 1.48503 * 109.47385 * 154.98531 * 3 2 1 7 7 C 1.39945 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00351 * 153.11188 * 7 2 1 9 9 C 1.41405 * 119.99963 * 333.10733 * 7 2 1 10 10 C 1.40721 * 120.24364 * 335.65054 * 9 7 2 11 11 C 1.37610 * 119.74287 * 180.22685 * 10 9 7 12 12 C 1.38631 * 120.25259 * 359.52317 * 11 10 9 13 13 C 1.50699 * 119.75079 * 180.27599 * 12 11 10 14 14 N 1.46900 * 109.47297 * 90.00154 * 13 12 11 15 15 C 1.46900 * 110.99825 * 176.60232 * 14 13 12 16 16 H 1.08993 * 109.47391 * 349.88158 * 15 14 13 17 17 C 1.53001 * 109.46970 * 229.87660 * 15 14 13 18 18 C 1.52994 * 109.47037 * 65.74767 * 17 15 14 19 19 O 1.42904 * 109.46889 * 182.83015 * 18 17 15 20 20 C 1.53006 * 109.46906 * 109.87991 * 15 14 13 21 21 C 1.52995 * 109.47036 * 53.74988 * 20 15 14 22 22 C 1.53001 * 109.46739 * 180.02562 * 21 20 15 23 23 C 1.53001 * 109.47439 * 60.00175 * 22 21 20 24 24 C 1.53003 * 109.46855 * 300.00113 * 23 22 21 25 25 C 1.53000 * 109.46667 * 293.75081 * 20 15 14 26 26 C 1.38635 * 120.49815 * 0.25280 * 12 11 10 27 27 C 1.37616 * 120.24978 * 359.97435 * 26 12 11 28 28 H 0.97005 * 119.99859 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.12304 * 0.03321 * 10 9 7 30 30 H 1.08005 * 119.87317 * 179.79350 * 11 10 9 31 31 H 1.09003 * 109.46890 * 209.99830 * 13 12 11 32 32 H 1.08992 * 109.47234 * 329.99297 * 13 12 11 33 33 H 1.00896 * 111.00096 * 52.64561 * 14 13 12 34 34 H 1.09000 * 109.47054 * 185.74932 * 17 15 14 35 35 H 1.09009 * 109.47050 * 305.74579 * 17 15 14 36 36 H 1.09001 * 109.47263 * 302.82703 * 18 17 15 37 37 H 1.08992 * 109.47297 * 62.83103 * 18 17 15 38 38 H 0.96702 * 113.99780 * 180.02562 * 19 18 17 39 39 H 1.08997 * 109.46799 * 173.75525 * 20 15 14 40 40 H 1.08997 * 109.47765 * 299.99945 * 21 20 15 41 41 H 1.08994 * 109.47167 * 60.00345 * 21 20 15 42 42 H 1.09002 * 109.47520 * 300.00197 * 22 21 20 43 43 H 1.09008 * 109.47193 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47151 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.46746 * 59.99548 * 23 22 21 46 46 H 1.08997 * 109.46948 * 299.99788 * 24 23 22 47 47 H 1.09007 * 109.46712 * 179.97438 * 24 23 22 48 48 H 1.08996 * 109.47585 * 300.00324 * 25 20 15 49 49 H 1.08997 * 109.47389 * 60.00164 * 25 20 15 50 50 H 1.08001 * 119.87911 * 180.02562 * 26 12 11 51 51 H 1.08006 * 120.12720 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 2.3844 2.1072 -1.3947 5 1 1.4964 2.6200 0.8027 6 1 3.5885 1.4120 0.5920 7 6 2.0079 -1.2120 -0.0005 8 1 3.0003 -1.2624 -0.4235 9 6 1.4155 -2.3706 0.5529 10 6 0.4077 -2.2546 1.5281 11 6 -0.1584 -3.3890 2.0631 12 6 0.2536 -4.6425 1.6377 13 6 -0.3784 -5.8772 2.2268 14 7 -1.5486 -6.2585 1.4248 15 6 -2.1440 -7.5058 1.9224 16 1 -1.4789 -7.9577 2.6581 17 6 -2.3477 -8.4746 0.7558 18 6 -0.9865 -8.8905 0.1947 19 8 -1.1778 -9.7431 -0.9361 20 6 -3.4943 -7.2017 2.5745 21 6 -4.3734 -6.4280 1.5899 22 6 -5.7234 -6.1233 2.2422 23 6 -5.5034 -5.2809 3.5003 24 6 -4.6243 -6.0546 4.4849 25 6 -3.2748 -6.3595 3.8328 26 6 1.2424 -4.7686 0.6742 27 6 1.8258 -3.6480 0.1287 28 1 -0.4850 0.8401 -0.0004 29 1 0.0820 -1.2789 1.8575 30 1 -0.9298 -3.3024 2.8141 31 1 0.3452 -6.6924 2.2240 32 1 -0.6907 -5.6723 3.2507 33 1 -1.3075 -6.3373 0.4482 34 1 -2.8816 -9.3580 1.1061 35 1 -2.9287 -7.9850 -0.0259 36 1 -0.4321 -8.0026 -0.1094 37 1 -0.4252 -9.4244 0.9614 38 1 -0.3549 -10.0465 -1.3436 39 1 -3.9863 -8.1362 2.8440 40 1 -3.8814 -5.4934 1.3203 41 1 -4.5298 -7.0279 0.6934 42 1 -6.2157 -7.0576 2.5121 43 1 -6.3499 -5.5724 1.5406 44 1 -6.4652 -5.0635 3.9648 45 1 -5.0112 -4.3466 3.2304 46 1 -5.1165 -6.9890 4.7547 47 1 -4.4672 -5.4542 5.3810 48 1 -2.6484 -6.9107 4.5342 49 1 -2.7827 -5.4250 3.5633 50 1 1.5555 -5.7501 0.3498 51 1 2.5956 -3.7486 -0.6222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355007118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:02 Heat of formation + Delta-G solvation = -85.641103 kcal Electronic energy + Delta-G solvation = -27141.523513 eV Core-core repulsion = 23616.723211 eV Total energy + Delta-G solvation = -3524.800302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.42042 -39.34592 -38.05097 -36.78653 -35.57159 -33.41394 -31.57466 -31.28151 -30.99068 -30.85617 -27.88756 -25.90719 -24.52071 -23.63976 -22.84335 -22.68369 -21.62190 -21.07015 -20.23170 -19.20484 -18.41074 -17.16711 -16.77267 -16.50482 -16.29295 -15.96330 -15.60438 -15.38154 -15.11008 -15.03483 -14.79954 -14.60899 -14.45181 -14.10746 -13.79865 -13.64217 -13.48485 -13.27268 -13.02518 -12.86753 -12.76684 -12.66481 -12.63397 -12.27479 -12.14788 -12.11283 -11.86141 -11.81811 -11.76626 -11.37200 -11.26563 -11.05115 -10.94805 -10.91652 -10.84003 -10.68025 -9.32084 -9.30057 -9.02679 -8.70071 -6.29068 0.98052 1.16986 1.36667 1.46732 1.54662 2.19847 2.66455 3.22875 3.43466 3.81964 3.87852 3.96758 3.99064 4.10977 4.17664 4.31061 4.35007 4.37186 4.45886 4.49861 4.58127 4.60814 4.65965 4.68801 4.75936 4.78868 4.81959 4.86525 4.89344 4.91185 5.04323 5.08106 5.12994 5.17248 5.20868 5.27942 5.35716 5.40201 5.45095 5.48375 5.51145 5.52905 5.58755 5.73296 5.83351 5.98328 6.10706 6.25584 6.37392 6.41848 6.61437 6.72231 6.83643 6.95128 7.06838 8.28942 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.003391 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.958434 B = 8256.339646 C = 9776.381760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.045 3.955 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.085 3.915 10 C -0.198 4.198 11 C -0.078 4.078 12 C -0.201 4.201 13 C 0.135 3.865 14 N -0.680 5.680 15 C 0.097 3.903 16 H 0.062 0.938 17 C -0.126 4.126 18 C 0.073 3.927 19 O -0.592 6.592 20 C -0.062 4.062 21 C -0.105 4.105 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.110 4.110 26 C -0.081 4.081 27 C -0.247 4.247 28 H 0.289 0.711 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.336 0.664 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.396 0.604 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.050 0.950 50 H 0.114 0.886 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.338 -14.878 5.626 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.172 4.172 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.542 4.542 8 H 0.092 0.908 9 C 0.083 3.917 10 C -0.218 4.218 11 C -0.097 4.097 12 C -0.203 4.203 13 C 0.007 3.993 14 N -0.312 5.312 15 C -0.013 4.013 16 H 0.080 0.920 17 C -0.164 4.164 18 C -0.005 4.005 19 O -0.400 6.400 20 C -0.081 4.081 21 C -0.142 4.142 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.099 4.099 27 C -0.267 4.267 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.156 0.844 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.245 0.755 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.132 0.868 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.612 -14.243 6.109 17.730 hybrid contribution 1.667 0.535 -0.757 1.907 sum -6.945 -13.708 5.351 16.272 Atomic orbital electron populations 1.69927 1.09308 1.30824 1.33936 1.26696 0.95147 1.04414 0.90902 0.85361 0.79529 0.76361 0.79498 1.18557 1.18972 1.18282 1.19773 1.02641 0.94336 1.37423 0.90841 1.17888 0.90954 0.92950 0.89893 1.21047 1.02927 0.96847 1.00953 1.20651 0.97703 0.92621 0.98741 1.19328 1.02536 0.94041 1.04351 1.20554 0.89673 0.92623 0.96420 1.60580 1.31005 1.33049 1.06576 1.21563 0.96369 0.87941 0.95383 0.92008 1.21871 0.96800 0.99678 0.98044 1.22229 0.97493 0.92870 0.87895 1.86413 1.37659 1.68836 1.47071 1.21080 0.94201 0.98197 0.94671 1.21424 0.94878 1.00437 0.97501 1.21527 0.97155 0.99939 0.96767 1.21513 0.99574 0.98338 0.96262 1.21487 0.95695 1.00297 0.97660 1.21508 0.97010 1.00010 0.96225 1.20667 0.96237 0.96846 0.96173 1.21109 1.06897 0.93059 1.05603 0.90054 0.89741 0.88331 0.94968 0.91381 0.84447 0.90017 0.91507 0.94283 0.92689 0.75464 0.90532 0.92834 0.92723 0.91349 0.92708 0.91595 0.93884 0.91201 0.92372 0.92300 0.93095 0.86839 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.74 11.55 21.83 0.25 -43.49 16 2 C 0.05 2.34 4.91 85.26 0.42 2.75 16 3 Si 0.97 38.78 29.63 68.60 2.03 40.82 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.51 -28.37 8.99 23.46 0.21 -28.16 16 8 H 0.07 3.95 7.97 -2.91 -0.02 3.92 16 9 C 0.09 4.69 5.55 -21.29 -0.12 4.58 16 10 C -0.20 -10.59 8.74 22.73 0.20 -10.39 16 11 C -0.08 -3.62 9.67 22.22 0.21 -3.41 16 12 C -0.20 -8.13 5.38 -19.68 -0.11 -8.24 16 13 C 0.14 4.15 5.26 85.56 0.45 4.60 16 14 N -0.68 -18.87 4.85 -495.58 -2.40 -21.27 16 15 C 0.10 2.10 1.87 44.92 0.08 2.19 16 16 H 0.06 1.27 7.53 -2.39 -0.02 1.26 16 17 C -0.13 -2.58 4.58 30.59 0.14 -2.44 16 18 C 0.07 1.46 6.93 71.98 0.50 1.96 16 19 O -0.59 -12.19 13.66 -148.98 -2.04 -14.22 16 20 C -0.06 -1.31 2.00 -10.79 -0.02 -1.33 16 21 C -0.10 -2.46 4.75 30.59 0.15 -2.31 16 22 C -0.12 -2.41 5.92 30.59 0.18 -2.23 16 23 C -0.12 -2.54 5.92 30.60 0.18 -2.35 16 24 C -0.11 -2.25 5.92 30.58 0.18 -2.07 16 25 C -0.11 -2.44 4.62 30.58 0.14 -2.30 16 26 C -0.08 -3.39 9.67 22.22 0.21 -3.18 16 27 C -0.25 -12.19 9.80 22.73 0.22 -11.97 16 28 H 0.29 13.97 8.30 -92.70 -0.77 13.20 16 29 H 0.08 4.76 6.50 -2.91 -0.02 4.74 16 30 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.03 0.89 8.02 -2.39 -0.02 0.87 16 32 H 0.07 2.06 6.85 -2.39 -0.02 2.04 16 33 H 0.34 9.95 6.75 -89.70 -0.61 9.34 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.56 6.89 -2.38 -0.02 1.55 16 36 H 0.04 0.85 6.83 -2.39 -0.02 0.83 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.40 4.72 9.12 -74.06 -0.68 4.05 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.59 7.44 -2.39 -0.02 1.58 16 41 H 0.05 1.25 6.74 -2.39 -0.02 1.23 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.05 1.42 6.83 -2.39 -0.02 1.41 16 50 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 51 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -60.91 392.85 0.71 -60.20 By element: Atomic # 1 Polarization: 42.65 SS G_CDS: -0.37 Total: 42.27 kcal Atomic # 6 Polarization: -67.55 SS G_CDS: 3.24 Total: -64.31 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -2.15 Total: -64.76 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -2.04 Total: -14.22 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.82 kcal Total: -60.91 0.71 -60.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355007118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.443 kcal (2) G-P(sol) polarization free energy of solvation -60.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds