Wall clock time and date at job start Tue Mar 31 2020 11:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48504 * 109.47271 * 274.96961 * 3 2 1 5 5 H 1.48495 * 109.47477 * 34.96751 * 3 2 1 6 6 H 1.48497 * 109.47396 * 154.97258 * 3 2 1 7 7 C 1.39944 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00213 * 148.36707 * 7 2 1 9 9 C 1.41395 * 120.00096 * 328.37806 * 7 2 1 10 10 C 1.40715 * 120.24792 * 158.09222 * 9 7 2 11 11 C 1.37617 * 119.74627 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24732 * 0.02713 * 11 10 9 13 13 C 1.50704 * 119.74921 * 179.97438 * 12 11 10 14 14 N 1.46895 * 109.47325 * 89.99095 * 13 12 11 15 15 C 1.46896 * 110.99836 * 174.41920 * 14 13 12 16 16 H 1.09003 * 109.47410 * 174.42895 * 15 14 13 17 17 C 1.53002 * 109.47666 * 294.43003 * 15 14 13 18 18 C 1.53000 * 109.47022 * 294.84004 * 17 15 14 19 19 O 1.42894 * 109.47083 * 176.65096 * 18 17 15 20 20 C 1.53002 * 109.47248 * 54.43345 * 15 14 13 21 21 C 1.52995 * 109.47498 * 179.97438 * 20 15 14 22 22 C 1.53003 * 109.47125 * 179.97438 * 21 20 15 23 23 C 1.52998 * 109.47272 * 59.99838 * 22 21 20 24 24 C 1.53003 * 109.46965 * 299.99716 * 23 22 21 25 25 C 1.53002 * 109.47066 * 59.99291 * 20 15 14 26 26 C 1.38630 * 120.50486 * 0.24370 * 12 11 10 27 27 C 1.37629 * 120.24618 * 359.45406 * 26 12 11 28 28 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.12541 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.87684 * 179.97438 * 11 10 9 31 31 H 1.09006 * 109.46557 * 329.99644 * 13 12 11 32 32 H 1.08996 * 109.46975 * 209.99736 * 13 12 11 33 33 H 1.00901 * 111.00490 * 298.37911 * 14 13 12 34 34 H 1.08996 * 109.47314 * 174.84101 * 17 15 14 35 35 H 1.09003 * 109.46823 * 54.83646 * 17 15 14 36 36 H 1.09006 * 109.47194 * 56.64791 * 18 17 15 37 37 H 1.09003 * 109.46943 * 296.65016 * 18 17 15 38 38 H 0.96706 * 114.00060 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.46548 * 300.00078 * 20 15 14 40 40 H 1.08998 * 109.46926 * 299.99488 * 21 20 15 41 41 H 1.08999 * 109.47224 * 59.99331 * 21 20 15 42 42 H 1.08998 * 109.46817 * 299.99575 * 22 21 20 43 43 H 1.09001 * 109.46859 * 179.97438 * 22 21 20 44 44 H 1.08997 * 109.46740 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47414 * 60.00103 * 23 22 21 46 46 H 1.08998 * 109.47371 * 300.00414 * 24 23 22 47 47 H 1.09001 * 109.46531 * 179.97438 * 24 23 22 48 48 H 1.08991 * 109.47441 * 300.00547 * 25 20 15 49 49 H 1.09003 * 109.46795 * 60.00937 * 25 20 15 50 50 H 1.07994 * 119.87994 * 179.70348 * 26 12 11 51 51 H 1.07997 * 120.12821 * 180.27068 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3847 2.1071 -1.3948 5 1 1.4962 2.6201 0.8024 6 1 3.5884 1.4122 0.5923 7 6 2.0080 -1.2119 0.0005 8 1 2.9677 -1.2816 -0.4900 9 6 1.4585 -2.3453 0.6431 10 6 1.8813 -3.6384 0.2836 11 6 1.3393 -4.7342 0.9154 12 6 0.3797 -4.5678 1.9020 13 6 -0.2068 -5.7758 2.5861 14 7 0.5997 -6.1091 3.7678 15 6 -0.0164 -7.1999 4.5349 16 1 0.6485 -7.4935 5.3472 17 6 -1.3508 -6.7259 5.1142 18 6 -1.0979 -5.6123 6.1324 19 8 -2.3477 -5.1160 6.6159 20 6 -0.2569 -8.3982 3.6145 21 6 -0.8980 -9.5346 4.4135 22 6 -1.1391 -10.7326 3.4928 23 6 0.1949 -11.2065 2.9126 24 6 0.8359 -10.0701 2.1134 25 6 1.0775 -8.8723 3.0351 26 6 -0.0484 -3.2989 2.2604 27 6 0.4843 -2.1883 1.6464 28 1 -0.4850 0.8401 -0.0004 29 1 2.6278 -3.7703 -0.4856 30 1 1.6619 -5.7277 0.6409 31 1 -0.2066 -6.6198 1.8962 32 1 -1.2296 -5.5582 2.8938 33 1 1.5462 -6.3407 3.5060 34 1 -1.8507 -7.5606 5.6054 35 1 -1.9817 -6.3467 4.3102 36 1 -0.5453 -4.8026 5.6557 37 1 -0.5169 -6.0072 6.9659 38 1 -2.2636 -4.4056 7.2666 39 1 -0.9218 -8.1046 2.8021 40 1 -0.2327 -9.8280 5.2255 41 1 -1.8485 -9.1971 4.8266 42 1 -1.8045 -10.4389 2.6811 43 1 -1.5954 -11.5423 4.0623 44 1 0.0230 -12.0597 2.2564 45 1 0.8604 -11.5003 3.7243 46 1 0.1705 -9.7763 1.3017 47 1 1.7865 -10.4076 1.7005 48 1 1.5345 -8.0629 2.4660 49 1 1.7424 -9.1659 3.8475 50 1 -0.7999 -3.1811 3.0270 51 1 0.1526 -1.2005 1.9301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355007123.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:06 Heat of formation + Delta-G solvation = -68.788213 kcal Electronic energy + Delta-G solvation = -27031.168064 eV Core-core repulsion = 23507.098558 eV Total energy + Delta-G solvation = -3524.069506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.71982 -37.61369 -36.94528 -35.72463 -33.81214 -31.92740 -30.85375 -30.07266 -29.50081 -29.16140 -26.49903 -24.56525 -23.42463 -22.63073 -21.84233 -20.96725 -20.24944 -20.02116 -19.09137 -17.28544 -17.13670 -16.39478 -15.78933 -15.24006 -14.70565 -14.63066 -14.30713 -14.21525 -14.04522 -13.82013 -13.62254 -13.57068 -13.22375 -12.62986 -12.51444 -12.46496 -12.19499 -11.91931 -11.78077 -11.64602 -11.47700 -11.33819 -11.21932 -11.08906 -11.01263 -10.85229 -10.75285 -10.57536 -10.46805 -10.30740 -10.19660 -10.03332 -9.73192 -9.56108 -9.35756 -8.97352 -7.95847 -7.40942 -7.35028 -6.87578 -4.28645 2.77026 3.06808 3.09694 3.11060 3.23338 3.92271 4.19729 4.43294 4.57521 4.61842 4.65498 4.79056 5.03424 5.10611 5.18278 5.25749 5.34883 5.40578 5.42604 5.47654 5.53100 5.56434 5.65574 5.74296 5.78991 5.81762 5.88042 5.93571 5.98487 6.01881 6.06497 6.08250 6.16953 6.20994 6.23369 6.29249 6.34399 6.41963 6.47590 6.54212 6.98215 7.06363 7.27345 7.38440 7.44505 7.63683 7.72723 7.75758 7.93678 8.06704 8.19306 8.31772 8.64751 8.89914 9.01410 10.08606 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.002990 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.451543 B = 9363.086935 C =10698.592531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.089 3.911 3 Si 0.894 3.106 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.472 4.472 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.233 4.233 11 C -0.079 4.079 12 C -0.217 4.217 13 C 0.120 3.880 14 N -0.675 5.675 15 C 0.093 3.907 16 H 0.075 0.925 17 C -0.111 4.111 18 C 0.079 3.921 19 O -0.582 6.582 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.072 4.072 27 C -0.181 4.181 28 H 0.282 0.718 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.022 0.978 32 H 0.063 0.937 33 H 0.339 0.661 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.376 0.624 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.085 0.915 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 -15.348 9.275 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.501 4.501 8 H 0.097 0.903 9 C 0.115 3.885 10 C -0.252 4.252 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.007 4.007 14 N -0.306 5.306 15 C -0.017 4.017 16 H 0.093 0.907 17 C -0.149 4.149 18 C 0.002 3.998 19 O -0.387 6.387 20 C -0.140 4.140 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.091 4.091 27 C -0.201 4.201 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.222 0.778 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.103 0.897 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.045 -15.155 9.229 17.862 hybrid contribution 0.773 0.475 -0.306 0.957 sum -1.272 -14.681 8.924 17.227 Atomic orbital electron populations 1.69929 1.08045 1.29705 1.31827 1.25904 0.94332 1.01382 0.91648 0.86540 0.81487 0.81074 0.79116 1.19555 1.19931 1.18189 1.19519 1.04986 0.93759 1.31798 0.90301 1.17539 0.89724 0.91687 0.89568 1.20853 1.06971 0.92710 1.04699 1.20334 0.96717 0.96251 0.96508 1.18840 1.05795 0.93125 1.04077 1.20615 0.96309 0.94682 0.89091 1.60797 1.05662 1.39155 1.24955 1.21538 0.95477 0.89110 0.95610 0.90689 1.21599 0.97211 0.97523 0.98553 1.22157 0.84782 0.97301 0.95557 1.86428 1.31644 1.57218 1.63438 1.21884 0.97393 0.95619 0.99103 1.21611 1.00712 0.94883 0.97876 1.21535 0.97239 0.97717 0.99221 1.21525 0.96882 0.97709 0.99434 1.21512 1.00472 0.95427 0.98156 1.21583 0.96927 0.97766 0.99003 1.20421 0.98255 0.92497 0.97907 1.21047 1.02572 0.96867 0.99584 0.90706 0.89331 0.90103 0.95942 0.91832 0.84179 0.91482 0.90995 0.91618 0.94692 0.77801 0.90603 0.92198 0.91670 0.92117 0.92374 0.92439 0.92239 0.92044 0.92216 0.91769 0.92120 0.89725 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.98 11.72 55.55 0.65 -19.33 16 2 C 0.09 2.23 4.80 -17.34 -0.08 2.14 16 3 Si 0.89 18.49 29.66 -169.99 -5.04 13.45 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.47 -12.61 8.96 -37.74 -0.34 -12.95 16 8 H 0.08 2.04 8.01 -52.48 -0.42 1.62 16 9 C 0.12 3.14 5.57 -106.82 -0.60 2.54 16 10 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16 11 C -0.08 -1.74 9.67 -39.66 -0.38 -2.13 16 12 C -0.22 -4.61 5.46 -104.33 -0.57 -5.18 16 13 C 0.12 2.04 4.81 -4.98 -0.02 2.01 16 14 N -0.68 -9.81 5.58 -107.99 -0.60 -10.41 16 15 C 0.09 1.10 2.11 -67.71 -0.14 0.96 16 16 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.11 -1.39 4.76 -26.73 -0.13 -1.52 16 18 C 0.08 1.02 6.97 37.16 0.26 1.28 16 19 O -0.58 -7.63 13.66 -35.23 -0.48 -8.11 16 20 C -0.12 -1.29 1.25 -90.62 -0.11 -1.40 16 21 C -0.11 -1.06 4.86 -26.73 -0.13 -1.19 16 22 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 23 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 24 C -0.12 -1.15 5.93 -26.70 -0.16 -1.30 16 25 C -0.12 -1.20 4.79 -26.70 -0.13 -1.33 16 26 C -0.07 -1.68 9.67 -39.66 -0.38 -2.07 16 27 C -0.18 -4.72 8.79 -38.87 -0.34 -5.07 16 28 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 29 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.08 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.02 0.37 6.19 -51.93 -0.32 0.05 16 32 H 0.06 1.11 6.06 -51.93 -0.31 0.79 16 33 H 0.34 4.91 7.47 -39.29 -0.29 4.62 16 34 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 35 H 0.07 1.04 6.21 -51.93 -0.32 0.71 16 36 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.38 3.29 9.12 45.56 0.42 3.71 16 39 H 0.08 0.95 6.46 -51.93 -0.34 0.61 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.62 6.32 -51.93 -0.33 0.29 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.76 6.59 -51.93 -0.34 0.41 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 1.86 8.06 -52.49 -0.42 1.43 16 51 H 0.10 2.75 6.50 -52.49 -0.34 2.41 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -27.83 388.65 -11.53 -39.36 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -7.95 Total: 12.88 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: -3.96 Total: -33.70 kcal Atomic # 7 Polarization: -29.79 SS G_CDS: 0.05 Total: -29.74 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.48 Total: -8.11 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.04 Total: 13.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -27.83 -11.53 -39.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355007123.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.430 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds