Wall clock time and date at job start Tue Mar 31 2020 11:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48504 * 109.47271 * 274.96961 * 3 2 1 5 5 H 1.48495 * 109.47477 * 34.96751 * 3 2 1 6 6 H 1.48497 * 109.47396 * 154.97258 * 3 2 1 7 7 C 1.39944 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00213 * 148.36707 * 7 2 1 9 9 C 1.41395 * 120.00096 * 328.37806 * 7 2 1 10 10 C 1.40715 * 120.24792 * 158.09222 * 9 7 2 11 11 C 1.37617 * 119.74627 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24732 * 0.02713 * 11 10 9 13 13 C 1.50704 * 119.74921 * 179.97438 * 12 11 10 14 14 N 1.46895 * 109.47325 * 89.99095 * 13 12 11 15 15 C 1.46896 * 110.99836 * 174.41920 * 14 13 12 16 16 H 1.09003 * 109.47410 * 174.42895 * 15 14 13 17 17 C 1.53002 * 109.47666 * 294.43003 * 15 14 13 18 18 C 1.53000 * 109.47022 * 294.84004 * 17 15 14 19 19 O 1.42894 * 109.47083 * 176.65096 * 18 17 15 20 20 C 1.53002 * 109.47248 * 54.43345 * 15 14 13 21 21 C 1.52995 * 109.47498 * 179.97438 * 20 15 14 22 22 C 1.53003 * 109.47125 * 179.97438 * 21 20 15 23 23 C 1.52998 * 109.47272 * 59.99838 * 22 21 20 24 24 C 1.53003 * 109.46965 * 299.99716 * 23 22 21 25 25 C 1.53002 * 109.47066 * 59.99291 * 20 15 14 26 26 C 1.38630 * 120.50486 * 0.24370 * 12 11 10 27 27 C 1.37629 * 120.24618 * 359.45406 * 26 12 11 28 28 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.12541 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.87684 * 179.97438 * 11 10 9 31 31 H 1.09006 * 109.46557 * 329.99644 * 13 12 11 32 32 H 1.08996 * 109.46975 * 209.99736 * 13 12 11 33 33 H 1.00901 * 111.00490 * 298.37911 * 14 13 12 34 34 H 1.08996 * 109.47314 * 174.84101 * 17 15 14 35 35 H 1.09003 * 109.46823 * 54.83646 * 17 15 14 36 36 H 1.09006 * 109.47194 * 56.64791 * 18 17 15 37 37 H 1.09003 * 109.46943 * 296.65016 * 18 17 15 38 38 H 0.96706 * 114.00060 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.46548 * 300.00078 * 20 15 14 40 40 H 1.08998 * 109.46926 * 299.99488 * 21 20 15 41 41 H 1.08999 * 109.47224 * 59.99331 * 21 20 15 42 42 H 1.08998 * 109.46817 * 299.99575 * 22 21 20 43 43 H 1.09001 * 109.46859 * 179.97438 * 22 21 20 44 44 H 1.08997 * 109.46740 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47414 * 60.00103 * 23 22 21 46 46 H 1.08998 * 109.47371 * 300.00414 * 24 23 22 47 47 H 1.09001 * 109.46531 * 179.97438 * 24 23 22 48 48 H 1.08991 * 109.47441 * 300.00547 * 25 20 15 49 49 H 1.09003 * 109.46795 * 60.00937 * 25 20 15 50 50 H 1.07994 * 119.87994 * 179.70348 * 26 12 11 51 51 H 1.07997 * 120.12821 * 180.27068 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3847 2.1071 -1.3948 5 1 1.4962 2.6201 0.8024 6 1 3.5884 1.4122 0.5923 7 6 2.0080 -1.2119 0.0005 8 1 2.9677 -1.2816 -0.4900 9 6 1.4585 -2.3453 0.6431 10 6 1.8813 -3.6384 0.2836 11 6 1.3393 -4.7342 0.9154 12 6 0.3797 -4.5678 1.9020 13 6 -0.2068 -5.7758 2.5861 14 7 0.5997 -6.1091 3.7678 15 6 -0.0164 -7.1999 4.5349 16 1 0.6485 -7.4935 5.3472 17 6 -1.3508 -6.7259 5.1142 18 6 -1.0979 -5.6123 6.1324 19 8 -2.3477 -5.1160 6.6159 20 6 -0.2569 -8.3982 3.6145 21 6 -0.8980 -9.5346 4.4135 22 6 -1.1391 -10.7326 3.4928 23 6 0.1949 -11.2065 2.9126 24 6 0.8359 -10.0701 2.1134 25 6 1.0775 -8.8723 3.0351 26 6 -0.0484 -3.2989 2.2604 27 6 0.4843 -2.1883 1.6464 28 1 -0.4850 0.8401 -0.0004 29 1 2.6278 -3.7703 -0.4856 30 1 1.6619 -5.7277 0.6409 31 1 -0.2066 -6.6198 1.8962 32 1 -1.2296 -5.5582 2.8938 33 1 1.5462 -6.3407 3.5060 34 1 -1.8507 -7.5606 5.6054 35 1 -1.9817 -6.3467 4.3102 36 1 -0.5453 -4.8026 5.6557 37 1 -0.5169 -6.0072 6.9659 38 1 -2.2636 -4.4056 7.2666 39 1 -0.9218 -8.1046 2.8021 40 1 -0.2327 -9.8280 5.2255 41 1 -1.8485 -9.1971 4.8266 42 1 -1.8045 -10.4389 2.6811 43 1 -1.5954 -11.5423 4.0623 44 1 0.0230 -12.0597 2.2564 45 1 0.8604 -11.5003 3.7243 46 1 0.1705 -9.7763 1.3017 47 1 1.7865 -10.4076 1.7005 48 1 1.5345 -8.0629 2.4660 49 1 1.7424 -9.1659 3.8475 50 1 -0.7999 -3.1811 3.0270 51 1 0.1526 -1.2005 1.9301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355007123.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:05 Heat of formation + Delta-G solvation = -84.277494 kcal Electronic energy + Delta-G solvation = -27031.839730 eV Core-core repulsion = 23507.098558 eV Total energy + Delta-G solvation = -3524.741172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.69710 -39.32911 -37.93453 -36.86309 -35.57736 -33.26305 -31.84616 -31.17412 -30.98703 -30.76444 -28.10556 -25.71810 -24.88517 -23.45702 -22.86021 -22.68872 -21.92604 -20.83586 -20.21373 -19.21528 -18.13053 -17.57333 -17.13115 -16.64475 -15.97203 -15.81144 -15.60467 -15.36973 -15.19706 -14.98188 -14.94813 -14.70545 -14.38915 -14.19970 -13.80135 -13.74618 -13.35089 -13.28649 -13.14959 -12.98324 -12.75111 -12.66831 -12.50368 -12.37574 -12.15418 -12.07749 -11.96667 -11.83704 -11.56890 -11.40278 -11.32443 -11.22362 -11.06482 -10.86230 -10.84157 -10.68771 -9.33748 -9.31185 -9.06146 -8.75112 -6.26911 0.98489 1.17040 1.36298 1.46481 1.56080 2.19052 2.63275 3.28945 3.46231 3.78484 3.80831 3.85377 3.94993 4.14364 4.26092 4.31277 4.33836 4.39777 4.42500 4.53262 4.54188 4.60495 4.62970 4.66453 4.67124 4.71584 4.74524 4.83142 4.85686 4.96093 5.04920 5.09065 5.15646 5.16750 5.20762 5.26692 5.28293 5.32688 5.34325 5.38061 5.42521 5.48949 5.49551 5.62389 5.72658 5.98551 6.10220 6.24021 6.32364 6.40785 6.63075 6.71439 6.92273 6.94297 7.07338 8.24135 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.002990 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.451543 B = 9363.086935 C =10698.592531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.049 3.951 3 Si 0.970 3.030 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.086 3.914 10 C -0.250 4.250 11 C -0.077 4.077 12 C -0.202 4.202 13 C 0.135 3.865 14 N -0.680 5.680 15 C 0.100 3.900 16 H 0.092 0.908 17 C -0.109 4.109 18 C 0.081 3.919 19 O -0.599 6.599 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.079 4.079 27 C -0.205 4.205 28 H 0.291 0.709 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.342 0.658 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.393 0.607 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.064 0.936 48 H 0.049 0.951 49 H 0.070 0.930 50 H 0.095 0.905 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 -17.101 10.584 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.169 4.169 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.542 4.542 8 H 0.093 0.907 9 C 0.084 3.916 10 C -0.269 4.269 11 C -0.096 4.096 12 C -0.204 4.204 13 C 0.006 3.994 14 N -0.311 5.311 15 C -0.010 4.010 16 H 0.110 0.890 17 C -0.147 4.147 18 C 0.004 3.996 19 O -0.407 6.407 20 C -0.133 4.133 21 C -0.147 4.147 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.097 4.097 27 C -0.224 4.224 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.161 0.839 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.242 0.758 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.089 0.911 50 H 0.113 0.887 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.684 -16.918 10.548 20.007 hybrid contribution 0.591 0.866 -0.647 1.232 sum -1.093 -16.052 9.901 18.891 Atomic orbital electron populations 1.69948 1.09514 1.31121 1.32572 1.26734 0.95027 1.04555 0.90617 0.85395 0.79671 0.76292 0.79608 1.18372 1.18896 1.18303 1.19742 1.05402 0.95323 1.33692 0.90745 1.17866 0.90630 0.92827 0.90310 1.21072 1.07575 0.92906 1.05374 1.20644 0.96127 0.96974 0.95850 1.19291 1.04180 0.93923 1.02982 1.20394 0.95990 0.93000 0.89975 1.60651 1.05627 1.41042 1.23734 1.21559 0.95235 0.88481 0.95677 0.89006 1.21600 0.97235 0.97913 0.97926 1.22122 0.84699 0.96640 0.96146 1.86387 1.31961 1.58159 1.64214 1.21784 0.97408 0.95711 0.98429 1.21580 1.00713 0.94434 0.97983 1.21535 0.97308 0.97843 0.98994 1.21510 0.96731 0.97400 0.99618 1.21511 1.00615 0.95595 0.97881 1.21557 0.96642 0.97585 0.99254 1.20620 0.98352 0.92828 0.97937 1.21003 1.03792 0.96893 1.00712 0.89851 0.88953 0.86951 0.94856 0.92263 0.83850 0.90056 0.93192 0.93885 0.92702 0.75823 0.92438 0.91124 0.91754 0.93006 0.91135 0.91749 0.91469 0.93183 0.91724 0.93200 0.91088 0.88724 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.17 11.72 21.83 0.26 -42.92 16 2 C 0.05 2.53 4.80 85.26 0.41 2.94 16 3 Si 0.97 38.67 29.66 68.60 2.03 40.70 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.51 -28.52 8.96 23.46 0.21 -28.31 16 8 H 0.07 4.02 8.01 -2.91 -0.02 4.00 16 9 C 0.09 4.78 5.57 -21.29 -0.12 4.66 16 10 C -0.25 -12.52 9.80 22.73 0.22 -12.30 16 11 C -0.08 -3.35 9.67 22.22 0.21 -3.14 16 12 C -0.20 -8.50 5.46 -19.67 -0.11 -8.61 16 13 C 0.13 4.39 4.81 85.56 0.41 4.80 16 14 N -0.68 -18.64 5.58 -495.58 -2.77 -21.40 16 15 C 0.10 2.14 2.11 44.92 0.09 2.23 16 16 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 17 C -0.11 -2.54 4.76 30.60 0.15 -2.39 16 18 C 0.08 1.96 6.97 71.98 0.50 2.46 16 19 O -0.60 -14.90 13.66 -148.98 -2.03 -16.94 16 20 C -0.11 -2.19 1.25 -10.79 -0.01 -2.20 16 21 C -0.11 -1.75 4.86 30.59 0.15 -1.60 16 22 C -0.12 -1.80 5.92 30.59 0.18 -1.62 16 23 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 24 C -0.12 -2.05 5.93 30.61 0.18 -1.87 16 25 C -0.11 -2.09 4.79 30.61 0.15 -1.95 16 26 C -0.08 -3.74 9.67 22.22 0.21 -3.52 16 27 C -0.20 -11.08 8.79 22.73 0.20 -10.88 16 28 H 0.29 13.92 8.30 -92.70 -0.77 13.15 16 29 H 0.09 4.43 8.06 -2.91 -0.02 4.40 16 30 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16 31 H 0.03 1.03 6.19 -2.38 -0.01 1.02 16 32 H 0.06 2.02 6.06 -2.39 -0.01 2.01 16 33 H 0.34 9.22 7.47 -89.69 -0.67 8.55 16 34 H 0.08 1.67 6.17 -2.39 -0.01 1.66 16 35 H 0.05 1.39 6.21 -2.39 -0.01 1.38 16 36 H 0.04 1.22 7.67 -2.38 -0.02 1.21 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.39 6.37 9.12 -74.05 -0.68 5.70 16 39 H 0.06 1.35 6.46 -2.39 -0.02 1.33 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.05 6.32 -2.39 -0.02 1.04 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.05 1.07 6.59 -2.39 -0.02 1.05 16 49 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.09 4.22 8.06 -2.91 -0.02 4.20 16 51 H 0.08 4.74 6.50 -2.91 -0.02 4.72 16 Total: -1.00 -61.70 388.65 0.29 -61.41 By element: Atomic # 1 Polarization: 42.37 SS G_CDS: -0.42 Total: 41.95 kcal Atomic # 6 Polarization: -66.03 SS G_CDS: 3.23 Total: -62.80 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -2.51 Total: -64.32 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -2.03 Total: -16.94 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -61.70 0.29 -61.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355007123.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.868 kcal (2) G-P(sol) polarization free energy of solvation -61.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds