Wall clock time and date at job start Tue Mar 31 2020 11:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50693 * 109.47212 * 2 1 4 4 C 1.38363 * 119.85423 * 269.72920 * 3 2 1 5 5 C 1.37949 * 120.14857 * 179.72203 * 4 3 2 6 6 C 1.39579 * 119.84943 * 0.55003 * 5 4 3 7 7 C 1.47846 * 120.14413 * 179.70551 * 6 5 4 8 8 O 1.21554 * 120.00411 * 140.62278 * 7 6 5 9 9 N 1.34780 * 119.99763 * 320.61964 * 7 6 5 10 10 C 1.46507 * 119.99881 * 183.18542 * 9 7 6 11 11 C 1.50700 * 109.46700 * 92.01325 * 10 9 7 12 12 H 1.07998 * 120.00134 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99428 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00462 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99720 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47175 * 89.99427 * 15 13 11 17 17 H 1.48500 * 109.47162 * 209.99935 * 15 13 11 18 18 H 1.48508 * 109.47079 * 330.00013 * 15 13 11 19 19 C 1.46497 * 120.00422 * 3.19310 * 9 7 6 20 20 C 1.52998 * 109.47450 * 99.51804 * 19 9 7 21 21 C 1.52995 * 109.46821 * 72.97276 * 20 19 9 22 22 C 1.53001 * 109.47162 * 264.31549 * 21 20 19 23 23 C 1.53003 * 109.47340 * 192.97125 * 20 19 9 24 24 C 1.52997 * 109.47245 * 70.24806 * 23 20 19 25 25 C 1.39570 * 119.71163 * 359.72223 * 6 5 4 26 26 C 1.37952 * 119.85630 * 0.02562 * 25 6 5 27 27 H 1.09003 * 109.46638 * 299.99911 * 1 2 3 28 28 H 1.09000 * 109.46665 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47047 * 60.00491 * 1 2 3 30 30 H 1.09000 * 109.47090 * 120.00035 * 2 1 3 31 31 H 1.08997 * 109.46786 * 239.99706 * 2 1 3 32 32 H 1.08003 * 119.92292 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.07844 * 180.24661 * 5 4 3 34 34 H 1.08999 * 109.46889 * 212.01065 * 10 9 7 35 35 H 1.08998 * 109.47182 * 332.01182 * 10 9 7 36 36 H 0.96999 * 119.99794 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47418 * 219.52911 * 19 9 7 38 38 H 1.09005 * 109.46787 * 339.52435 * 19 9 7 39 39 H 1.09000 * 109.47483 * 312.97136 * 20 19 9 40 40 H 1.09002 * 109.47432 * 24.31654 * 21 20 19 41 41 H 1.09004 * 109.47473 * 144.31919 * 21 20 19 42 42 H 1.08994 * 109.47158 * 74.36134 * 22 21 20 43 43 H 1.09005 * 109.47360 * 194.36027 * 22 21 20 44 44 H 1.08999 * 109.46940 * 314.36108 * 22 21 20 45 45 H 1.08999 * 109.46939 * 190.24816 * 23 20 19 46 46 H 1.09002 * 109.46566 * 310.25005 * 23 20 19 47 47 H 1.09006 * 109.47041 * 294.34840 * 24 23 20 48 48 H 1.09003 * 109.47116 * 54.34872 * 24 23 20 49 49 H 1.08991 * 109.47359 * 174.35326 * 24 23 20 50 50 H 1.08005 * 120.07575 * 179.97438 * 25 6 5 51 51 H 1.07999 * 119.93181 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2674 2.0682 -1.2000 5 6 2.7218 3.3707 -1.2071 6 6 2.9555 4.0315 -0.0001 7 6 3.4487 5.4253 -0.0001 8 8 3.0219 6.2212 0.8134 9 7 4.3718 5.8134 -0.9023 10 6 4.9120 7.1746 -0.8584 11 6 6.1598 7.1927 -0.0136 12 1 6.5147 6.2816 0.4451 13 6 6.8477 8.3727 0.1746 14 7 6.4153 9.4822 -0.3835 15 14 8.3941 8.3953 1.2224 16 1 9.5772 8.1315 0.3645 17 1 8.5363 9.7259 1.8662 18 1 8.2981 7.3465 2.2693 19 6 4.8349 4.8744 -1.9269 20 6 4.1055 5.1543 -3.2424 21 6 4.6431 6.4475 -3.8583 22 6 3.7380 7.6158 -3.4623 23 6 4.3374 3.9931 -4.2113 24 6 3.5808 2.7582 -3.7178 25 6 2.7219 3.3708 1.2069 26 6 2.2625 2.0700 1.2000 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 2.0907 1.5541 -2.1332 33 1 2.9010 3.8763 -2.1445 34 1 5.1530 7.5026 -1.8695 35 1 4.1704 7.8460 -0.4256 36 1 6.8995 10.3122 -0.2514 37 1 5.9081 4.9964 -2.0733 38 1 4.6258 3.8539 -1.6057 39 1 3.0377 5.2597 -3.0506 40 1 5.6538 6.6310 -3.4936 41 1 4.6603 6.3532 -4.9442 42 1 3.9142 7.8741 -2.4182 43 1 3.9601 8.4773 -4.0921 44 1 2.6950 7.3283 -3.5944 45 1 3.9760 4.2688 -5.2020 46 1 5.4031 3.7699 -4.2624 47 1 4.0097 2.4227 -2.7735 48 1 2.5306 3.0103 -3.5708 49 1 3.6633 1.9620 -4.4575 50 1 2.9011 3.8764 2.1443 51 1 2.0817 1.5574 2.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355216452.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:42 Heat of formation + Delta-G solvation = -1.693957 kcal Electronic energy + Delta-G solvation = -28323.806278 eV Core-core repulsion = 24802.646197 eV Total energy + Delta-G solvation = -3521.160081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.39429 -38.37113 -37.26274 -34.33935 -33.92727 -32.50302 -32.27070 -30.55613 -29.74132 -28.33474 -26.56414 -24.96442 -24.09336 -22.88239 -22.47330 -21.82707 -20.92667 -20.36804 -18.77846 -16.84600 -16.68456 -16.04861 -15.66068 -15.05078 -14.76180 -14.65161 -14.36368 -14.12189 -13.86416 -13.77725 -13.48730 -13.33750 -13.18780 -13.11326 -12.71869 -12.53445 -12.34729 -12.19936 -11.76675 -11.70794 -11.39921 -11.26635 -11.16555 -11.09482 -11.02367 -10.92959 -10.85800 -10.74597 -10.42106 -10.26647 -10.24160 -10.11626 -9.95411 -9.31898 -8.97599 -8.75332 -8.48107 -8.38845 -7.57947 -6.03056 -4.07114 1.18435 1.50248 3.30342 3.36255 3.38041 3.42919 3.85890 4.11413 4.45680 4.65352 4.75524 4.87433 4.93429 5.01397 5.06535 5.16122 5.17499 5.21734 5.31545 5.37541 5.40827 5.50132 5.56566 5.59297 5.65927 5.70475 5.79027 5.85828 5.87802 5.96324 5.97101 6.02573 6.05906 6.11403 6.12816 6.18520 6.23217 6.40269 6.43480 6.49499 6.57201 6.61892 6.65592 6.74961 6.96068 7.02955 7.18845 7.44345 7.57694 7.93316 8.27491 8.42724 8.90591 9.09331 9.57405 11.04359 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.004391 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.055456 B = 6375.437670 C = 7620.308142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.074 4.074 4 C -0.131 4.131 5 C -0.114 4.114 6 C -0.121 4.121 7 C 0.544 3.456 8 O -0.539 6.539 9 N -0.583 5.583 10 C 0.225 3.775 11 C -0.528 4.528 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.101 3.899 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.182 4.182 23 C -0.119 4.119 24 C -0.172 4.172 25 C -0.068 4.068 26 C -0.128 4.128 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.159 0.841 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.099 0.901 43 H 0.046 0.954 44 H 0.040 0.960 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.052 0.948 50 H 0.129 0.871 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 -17.808 -6.795 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.074 4.074 4 C -0.149 4.149 5 C -0.132 4.132 6 C -0.124 4.124 7 C 0.331 3.669 8 O -0.418 6.418 9 N -0.313 5.313 10 C 0.107 3.893 11 C -0.567 4.567 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.023 4.023 20 C -0.132 4.132 21 C -0.152 4.152 22 C -0.238 4.238 23 C -0.157 4.157 24 C -0.229 4.229 25 C -0.086 4.086 26 C -0.146 4.146 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.143 0.857 33 H 0.176 0.824 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.146 0.854 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.201 -17.143 -6.384 20.047 hybrid contribution 0.963 0.121 0.584 1.133 sum -7.238 -17.022 -5.800 19.385 Atomic orbital electron populations 1.21749 0.94765 1.01502 1.02390 1.20554 0.96152 0.92780 1.02746 1.20002 0.98090 0.96029 0.93304 1.21026 1.01368 0.95053 0.97482 1.22545 0.96660 0.94913 0.99092 1.20288 1.02571 0.95323 0.94235 1.18273 0.80141 0.86745 0.81734 1.90746 1.58383 1.53895 1.38757 1.48084 1.39205 1.15434 1.28545 1.19889 0.94064 0.76446 0.98940 1.21489 1.09175 0.94833 1.31209 0.92569 1.24897 0.97841 0.95327 0.95885 1.69920 1.39774 0.99282 1.44272 0.86540 0.83112 0.77439 0.80601 1.20673 1.21116 1.19962 1.22001 0.99547 0.93574 0.87210 1.21913 1.00420 0.95483 0.95432 1.21626 1.00652 0.93872 0.99039 1.22500 0.98117 0.97533 1.05657 1.21636 1.00982 0.94474 0.98587 1.22464 1.00486 0.98046 1.01879 1.21224 0.95749 0.93977 0.97692 1.20922 1.01349 0.94782 0.97533 0.92491 0.92552 0.92495 0.91104 0.91067 0.85736 0.82447 0.91625 0.93791 0.92747 0.90232 0.90141 0.90830 0.90820 0.92843 0.88263 0.93455 0.94045 0.91794 0.91512 0.91420 0.92153 0.92915 0.85351 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.90 37.16 0.37 -0.77 16 2 C -0.08 -0.71 6.06 -27.88 -0.17 -0.88 16 3 C -0.07 -0.84 5.14 -104.53 -0.54 -1.37 16 4 C -0.13 -1.52 8.20 -39.64 -0.33 -1.85 16 5 C -0.11 -1.61 5.73 -39.19 -0.22 -1.83 16 6 C -0.12 -2.11 5.24 -104.97 -0.55 -2.66 16 7 C 0.54 11.98 7.35 -12.33 -0.09 11.89 16 8 O -0.54 -14.16 16.45 5.32 0.09 -14.08 16 9 N -0.58 -12.39 2.42 -176.17 -0.43 -12.82 16 10 C 0.22 5.71 3.18 -5.19 -0.02 5.69 16 11 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 12 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 15 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.10 1.68 4.34 -4.04 -0.02 1.66 16 20 C -0.11 -1.59 1.58 -90.62 -0.14 -1.73 16 21 C -0.11 -1.76 5.10 -26.73 -0.14 -1.90 16 22 C -0.18 -3.14 9.22 37.16 0.34 -2.80 16 23 C -0.12 -1.28 5.28 -26.73 -0.14 -1.42 16 24 C -0.17 -1.63 7.05 37.16 0.26 -1.37 16 25 C -0.07 -1.08 9.63 -39.19 -0.38 -1.45 16 26 C -0.13 -1.62 9.68 -39.64 -0.38 -2.00 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.12 1.14 6.70 -52.48 -0.35 0.79 16 33 H 0.16 2.10 1.15 -52.48 -0.06 2.04 16 34 H 0.07 1.62 3.58 -51.93 -0.19 1.43 16 35 H 0.04 1.29 7.18 -51.93 -0.37 0.91 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.08 1.39 7.78 -51.93 -0.40 0.98 16 38 H 0.08 1.22 3.70 -51.93 -0.19 1.02 16 39 H 0.07 1.08 6.11 -51.93 -0.32 0.76 16 40 H 0.07 1.28 6.59 -51.93 -0.34 0.94 16 41 H 0.05 0.70 7.58 -51.93 -0.39 0.31 16 42 H 0.10 2.09 3.81 -51.93 -0.20 1.89 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.66 7.74 -51.93 -0.40 0.25 16 45 H 0.06 0.63 7.86 -51.93 -0.41 0.23 16 46 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 47 H 0.07 0.68 4.78 -51.93 -0.25 0.44 16 48 H 0.06 0.56 6.08 -51.93 -0.32 0.25 16 49 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 51 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -31.90 378.41 -9.44 -41.34 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.96 Total: 4.67 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.56 Total: -16.28 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.31 Total: -38.16 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.09 Total: -14.08 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.90 -9.44 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355216452.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.646 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds