Wall clock time and date at job start Tue Mar 31 2020 11:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50693 * 109.47212 * 2 1 4 4 C 1.38363 * 119.85423 * 269.72920 * 3 2 1 5 5 C 1.37949 * 120.14857 * 179.72203 * 4 3 2 6 6 C 1.39579 * 119.84943 * 0.55003 * 5 4 3 7 7 C 1.47846 * 120.14413 * 179.70551 * 6 5 4 8 8 O 1.21554 * 120.00411 * 140.62278 * 7 6 5 9 9 N 1.34780 * 119.99763 * 320.61964 * 7 6 5 10 10 C 1.46507 * 119.99881 * 183.18542 * 9 7 6 11 11 C 1.50700 * 109.46700 * 92.01325 * 10 9 7 12 12 H 1.07998 * 120.00134 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99428 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00462 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99720 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47175 * 89.99427 * 15 13 11 17 17 H 1.48500 * 109.47162 * 209.99935 * 15 13 11 18 18 H 1.48508 * 109.47079 * 330.00013 * 15 13 11 19 19 C 1.46497 * 120.00422 * 3.19310 * 9 7 6 20 20 C 1.52998 * 109.47450 * 99.51804 * 19 9 7 21 21 C 1.52995 * 109.46821 * 72.97276 * 20 19 9 22 22 C 1.53001 * 109.47162 * 264.31549 * 21 20 19 23 23 C 1.53003 * 109.47340 * 192.97125 * 20 19 9 24 24 C 1.52997 * 109.47245 * 70.24806 * 23 20 19 25 25 C 1.39570 * 119.71163 * 359.72223 * 6 5 4 26 26 C 1.37952 * 119.85630 * 0.02562 * 25 6 5 27 27 H 1.09003 * 109.46638 * 299.99911 * 1 2 3 28 28 H 1.09000 * 109.46665 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47047 * 60.00491 * 1 2 3 30 30 H 1.09000 * 109.47090 * 120.00035 * 2 1 3 31 31 H 1.08997 * 109.46786 * 239.99706 * 2 1 3 32 32 H 1.08003 * 119.92292 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.07844 * 180.24661 * 5 4 3 34 34 H 1.08999 * 109.46889 * 212.01065 * 10 9 7 35 35 H 1.08998 * 109.47182 * 332.01182 * 10 9 7 36 36 H 0.96999 * 119.99794 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47418 * 219.52911 * 19 9 7 38 38 H 1.09005 * 109.46787 * 339.52435 * 19 9 7 39 39 H 1.09000 * 109.47483 * 312.97136 * 20 19 9 40 40 H 1.09002 * 109.47432 * 24.31654 * 21 20 19 41 41 H 1.09004 * 109.47473 * 144.31919 * 21 20 19 42 42 H 1.08994 * 109.47158 * 74.36134 * 22 21 20 43 43 H 1.09005 * 109.47360 * 194.36027 * 22 21 20 44 44 H 1.08999 * 109.46940 * 314.36108 * 22 21 20 45 45 H 1.08999 * 109.46939 * 190.24816 * 23 20 19 46 46 H 1.09002 * 109.46566 * 310.25005 * 23 20 19 47 47 H 1.09006 * 109.47041 * 294.34840 * 24 23 20 48 48 H 1.09003 * 109.47116 * 54.34872 * 24 23 20 49 49 H 1.08991 * 109.47359 * 174.35326 * 24 23 20 50 50 H 1.08005 * 120.07575 * 179.97438 * 25 6 5 51 51 H 1.07999 * 119.93181 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2674 2.0682 -1.2000 5 6 2.7218 3.3707 -1.2071 6 6 2.9555 4.0315 -0.0001 7 6 3.4487 5.4253 -0.0001 8 8 3.0219 6.2212 0.8134 9 7 4.3718 5.8134 -0.9023 10 6 4.9120 7.1746 -0.8584 11 6 6.1598 7.1927 -0.0136 12 1 6.5147 6.2816 0.4451 13 6 6.8477 8.3727 0.1746 14 7 6.4153 9.4822 -0.3835 15 14 8.3941 8.3953 1.2224 16 1 9.5772 8.1315 0.3645 17 1 8.5363 9.7259 1.8662 18 1 8.2981 7.3465 2.2693 19 6 4.8349 4.8744 -1.9269 20 6 4.1055 5.1543 -3.2424 21 6 4.6431 6.4475 -3.8583 22 6 3.7380 7.6158 -3.4623 23 6 4.3374 3.9931 -4.2113 24 6 3.5808 2.7582 -3.7178 25 6 2.7219 3.3708 1.2069 26 6 2.2625 2.0700 1.2000 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 2.0907 1.5541 -2.1332 33 1 2.9010 3.8763 -2.1445 34 1 5.1530 7.5026 -1.8695 35 1 4.1704 7.8460 -0.4256 36 1 6.8995 10.3122 -0.2514 37 1 5.9081 4.9964 -2.0733 38 1 4.6258 3.8539 -1.6057 39 1 3.0377 5.2597 -3.0506 40 1 5.6538 6.6310 -3.4936 41 1 4.6603 6.3532 -4.9442 42 1 3.9142 7.8741 -2.4182 43 1 3.9601 8.4773 -4.0921 44 1 2.6950 7.3283 -3.5944 45 1 3.9760 4.2688 -5.2020 46 1 5.4031 3.7699 -4.2624 47 1 4.0097 2.4227 -2.7735 48 1 2.5306 3.0103 -3.5708 49 1 3.6633 1.9620 -4.4575 50 1 2.9011 3.8764 2.1443 51 1 2.0817 1.5574 2.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355216452.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:41 Heat of formation + Delta-G solvation = -18.736351 kcal Electronic energy + Delta-G solvation = -28324.545291 eV Core-core repulsion = 24802.646197 eV Total energy + Delta-G solvation = -3521.899095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.76716 -39.62158 -38.72227 -35.85268 -35.09287 -34.42808 -33.47104 -31.65578 -30.96992 -29.72656 -28.23500 -26.20207 -25.43301 -24.36455 -23.63674 -22.90472 -22.01950 -21.63395 -20.16846 -18.78340 -18.28868 -17.51502 -16.84159 -16.64187 -16.16992 -15.97694 -15.77357 -15.26106 -15.18279 -14.88456 -14.54556 -14.52502 -14.36649 -14.16504 -14.08122 -13.93558 -13.65635 -13.28647 -13.16812 -12.99493 -12.93704 -12.71523 -12.55425 -12.39430 -12.28365 -12.17520 -12.12752 -11.95290 -11.92423 -11.67129 -11.65339 -11.35966 -11.12554 -11.06512 -10.70278 -10.58915 -9.82294 -9.63769 -9.36557 -8.21820 -6.36010 0.01839 0.43382 1.33260 1.36279 1.46269 1.85680 2.27627 2.42209 2.83322 3.06701 3.56931 3.75579 3.84689 3.90283 3.94060 4.01244 4.08710 4.34478 4.41240 4.47310 4.49360 4.51697 4.58824 4.60157 4.62476 4.64756 4.69930 4.75968 4.96140 4.97449 5.01508 5.06422 5.09006 5.15264 5.16007 5.17816 5.19169 5.26827 5.31823 5.38147 5.39506 5.46263 5.47596 5.48881 5.52201 5.55626 5.62422 5.67500 5.86912 6.00936 6.11821 6.68827 6.74247 7.25122 7.41656 8.84082 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.004391 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.055456 B = 6375.437670 C = 7620.308142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.060 4.060 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.152 4.152 7 C 0.533 3.467 8 O -0.602 6.602 9 N -0.584 5.584 10 C 0.244 3.756 11 C -0.551 4.551 12 H 0.046 0.954 13 C 0.013 3.987 14 N -0.923 5.923 15 Si 0.962 3.038 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.277 1.277 19 C 0.098 3.902 20 C -0.104 4.104 21 C -0.112 4.112 22 C -0.179 4.179 23 C -0.112 4.112 24 C -0.173 4.173 25 C -0.088 4.088 26 C -0.124 4.124 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.075 0.925 35 H -0.009 1.009 36 H 0.267 0.733 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.077 0.923 50 H 0.106 0.894 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 -22.004 -8.868 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.060 4.060 4 C -0.138 4.138 5 C -0.128 4.128 6 C -0.155 4.155 7 C 0.323 3.677 8 O -0.485 6.485 9 N -0.312 5.312 10 C 0.124 3.876 11 C -0.589 4.589 12 H 0.064 0.936 13 C -0.187 4.187 14 N -0.562 5.562 15 Si 0.787 3.213 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.202 1.202 19 C -0.025 4.025 20 C -0.124 4.124 21 C -0.149 4.149 22 C -0.236 4.236 23 C -0.150 4.150 24 C -0.229 4.229 25 C -0.107 4.107 26 C -0.142 4.142 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.092 0.908 35 H 0.009 0.991 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.096 0.904 50 H 0.124 0.876 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.295 -21.378 -8.498 24.455 hybrid contribution 0.917 1.376 1.225 2.058 sum -7.378 -20.002 -7.273 22.526 Atomic orbital electron populations 1.21756 0.94150 1.02619 1.01912 1.20656 0.96464 0.90410 1.04485 1.20471 0.95627 0.97510 0.92440 1.21397 0.99454 0.93702 0.99221 1.22625 0.96538 0.95926 0.97723 1.19982 1.06036 0.93013 0.96492 1.19142 0.79515 0.88492 0.80562 1.90683 1.60610 1.56093 1.41160 1.48080 1.38830 1.14651 1.29654 1.19422 0.91637 0.78158 0.98376 1.21786 1.10352 0.94798 1.31977 0.93614 1.25758 1.01098 0.94820 0.96979 1.70036 1.41101 0.99822 1.45246 0.85497 0.79546 0.77380 0.78880 1.18638 1.20490 1.20231 1.22297 0.99230 0.93495 0.87442 1.21842 0.99424 0.96512 0.94586 1.21614 0.98582 0.93684 1.01011 1.22406 0.99535 0.98889 1.02763 1.21612 1.01838 0.93393 0.98184 1.22461 1.00282 0.97921 1.02253 1.21213 0.97405 0.95646 0.96422 1.21170 1.00237 0.93220 0.99572 0.93405 0.90702 0.92640 0.89906 0.88934 0.82063 0.81816 0.90812 0.99094 0.92410 0.91315 0.88051 0.91272 0.93344 0.89577 0.92706 0.93019 0.92761 0.89944 0.90954 0.92108 0.91783 0.90399 0.87556 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.90 71.99 0.71 -0.94 16 2 C -0.08 -0.98 6.06 29.85 0.18 -0.80 16 3 C -0.06 -1.15 5.14 -19.81 -0.10 -1.25 16 4 C -0.12 -2.34 8.20 22.23 0.18 -2.16 16 5 C -0.11 -2.95 5.73 22.52 0.13 -2.83 16 6 C -0.15 -5.52 5.24 -20.09 -0.11 -5.62 16 7 C 0.53 25.42 7.35 86.79 0.64 26.06 16 8 O -0.60 -34.95 16.45 -3.89 -0.06 -35.01 16 9 N -0.58 -26.64 2.42 -829.56 -2.01 -28.65 16 10 C 0.24 13.47 3.18 85.63 0.27 13.74 16 11 C -0.55 -32.87 9.39 25.60 0.24 -32.63 16 12 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 13 C 0.01 0.75 5.46 84.65 0.46 1.22 16 14 N -0.92 -56.31 13.29 21.45 0.28 -56.03 16 15 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 19 C 0.10 3.32 4.34 86.38 0.37 3.70 16 20 C -0.10 -2.84 1.58 -10.79 -0.02 -2.85 16 21 C -0.11 -3.41 5.10 30.59 0.16 -3.25 16 22 C -0.18 -6.45 9.22 71.98 0.66 -5.79 16 23 C -0.11 -2.04 5.28 30.59 0.16 -1.88 16 24 C -0.17 -2.50 7.05 71.98 0.51 -1.99 16 25 C -0.09 -2.90 9.63 22.52 0.22 -2.68 16 26 C -0.12 -2.94 9.68 22.23 0.22 -2.73 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 32 H 0.16 2.01 6.70 -2.91 -0.02 1.99 16 33 H 0.17 4.10 1.15 -2.91 0.00 4.09 16 34 H 0.07 3.93 3.58 -2.39 -0.01 3.92 16 35 H -0.01 -0.58 7.18 -2.39 -0.02 -0.60 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.07 2.47 7.78 -2.39 -0.02 2.45 16 38 H 0.10 3.02 3.70 -2.38 -0.01 3.01 16 39 H 0.07 1.98 6.11 -2.39 -0.01 1.96 16 40 H 0.05 1.73 6.59 -2.39 -0.02 1.71 16 41 H 0.09 2.08 7.58 -2.38 -0.02 2.06 16 42 H 0.05 2.50 3.81 -2.39 -0.01 2.49 16 43 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.05 1.76 7.74 -2.39 -0.02 1.74 16 45 H 0.08 1.26 7.86 -2.39 -0.02 1.24 16 46 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 47 H 0.06 0.98 4.78 -2.38 -0.01 0.96 16 48 H 0.06 0.90 6.08 -2.39 -0.01 0.89 16 49 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.11 3.85 8.06 -2.91 -0.02 3.83 16 51 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -77.38 378.41 6.06 -71.32 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.93 Total: 22.98 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 4.89 Total: -22.69 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.72 Total: -84.68 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.06 Total: -35.01 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -77.38 6.06 -71.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355216452.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.582 kcal (2) G-P(sol) polarization free energy of solvation -77.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds