Wall clock time and date at job start Tue Mar 31 2020 12:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47375 * 2 1 4 4 C 1.53008 * 109.46920 * 119.99737 * 2 1 3 5 5 C 1.52994 * 109.47206 * 71.28186 * 4 2 1 6 6 C 1.53005 * 109.88023 * 63.11964 * 5 4 2 7 7 O 1.42901 * 109.47111 * 62.98560 * 6 5 4 8 8 C 1.54312 * 109.88995 * 184.31927 * 5 4 2 9 9 C 1.55143 * 103.02003 * 97.12151 * 8 5 4 10 10 C 1.54903 * 101.65178 * 35.65314 * 9 8 5 11 11 N 1.47449 * 109.88747 * 302.08937 * 5 4 2 12 12 C 1.46898 * 110.99980 * 117.33791 * 11 5 4 13 13 C 1.50700 * 109.47168 * 190.00112 * 12 11 5 14 14 C 1.38631 * 119.74504 * 269.72562 * 13 12 11 15 15 C 1.37622 * 120.24536 * 179.71613 * 14 13 12 16 16 C 1.40714 * 119.74562 * 0.57644 * 15 14 13 17 17 C 1.41392 * 120.24811 * 179.67777 * 16 15 14 18 18 H 1.07995 * 120.00295 * 209.15683 * 17 16 15 19 19 C 1.39952 * 119.99738 * 29.15437 * 17 16 15 20 20 N 1.30826 * 119.99896 * 9.67293 * 19 17 16 21 21 Si 1.86798 * 119.99771 * 189.67179 * 19 17 16 22 22 H 1.48501 * 109.47400 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47092 * 119.99911 * 21 19 17 24 24 H 1.48500 * 109.47245 * 239.99751 * 21 19 17 25 25 C 1.40718 * 119.51201 * 359.69901 * 16 15 14 26 26 C 1.37622 * 119.73994 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.47504 * 290.72712 * 1 2 3 28 28 H 1.08997 * 109.47052 * 50.73264 * 1 2 3 29 29 H 1.09000 * 109.47104 * 170.72980 * 1 2 3 30 30 H 1.08998 * 109.47503 * 239.99565 * 2 1 3 31 31 H 1.09007 * 109.46953 * 59.99483 * 3 2 1 32 32 H 1.08994 * 109.47640 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46892 * 299.99803 * 3 2 1 34 34 H 1.09004 * 109.46876 * 191.28508 * 4 2 1 35 35 H 1.09002 * 109.46986 * 311.28210 * 4 2 1 36 36 H 1.09003 * 109.47221 * 182.98784 * 6 5 4 37 37 H 1.09003 * 109.46920 * 302.98730 * 6 5 4 38 38 H 0.96698 * 113.99991 * 184.99218 * 7 6 5 39 39 H 1.09003 * 110.70594 * 215.50224 * 8 5 4 40 40 H 1.09003 * 110.70611 * 338.73627 * 8 5 4 41 41 H 1.08996 * 110.99082 * 277.55926 * 9 8 5 42 42 H 1.09006 * 111.02256 * 153.76005 * 9 8 5 43 43 H 1.09000 * 110.37553 * 204.09513 * 10 9 8 44 44 H 1.09009 * 110.37415 * 81.76070 * 10 9 8 45 45 H 1.09009 * 109.47093 * 309.99688 * 12 11 5 46 46 H 1.09004 * 109.47255 * 69.99725 * 12 11 5 47 47 H 1.08000 * 119.88112 * 359.97438 * 14 13 12 48 48 H 1.08005 * 120.12615 * 180.27810 * 15 14 13 49 49 H 0.96997 * 119.99658 * 180.02562 * 20 19 17 50 50 H 1.07996 * 120.12995 * 180.02562 * 25 16 15 51 51 H 1.08001 * 119.87278 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.7735 -2.2219 1.1164 6 6 2.5589 -2.7868 -0.0690 7 8 3.9593 -2.6352 0.1717 8 6 2.1851 -2.9454 2.4158 9 6 0.8431 -3.0760 3.1832 10 6 -0.1577 -3.3140 2.0251 11 7 0.3314 -2.4600 0.9218 12 6 0.0722 -3.0848 -0.3821 13 6 -1.4105 -3.0887 -0.6514 14 6 -2.1804 -4.1679 -0.2457 15 6 -3.5363 -4.1796 -0.4812 16 6 -4.1386 -3.0962 -1.1472 17 6 -5.5296 -3.1003 -1.4007 18 1 -5.9235 -2.5777 -2.2597 19 6 -6.3960 -3.7816 -0.5382 20 7 -5.9509 -4.2526 0.5983 21 14 -8.1879 -4.0185 -1.0099 22 1 -8.4372 -3.3973 -2.3355 23 1 -8.4939 -5.4701 -1.0787 24 1 -9.0570 -3.3772 0.0092 25 6 -3.3463 -2.0088 -1.5595 26 6 -1.9932 -2.0160 -1.3084 27 1 -0.3634 0.3637 0.9611 28 1 -0.3633 0.6504 -0.7956 29 1 -0.3633 -1.0142 -0.1655 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.1112 -0.5504 1.3556 35 1 1.5218 -0.3367 2.1278 36 1 2.3234 -3.8441 -0.1902 37 1 2.2856 -2.2474 -0.9760 38 1 4.5173 -2.9021 -0.5715 39 1 2.5998 -3.9288 2.1946 40 1 2.8964 -2.3446 2.9826 41 1 0.6087 -2.1563 3.7191 42 1 0.8629 -3.9275 3.8635 43 1 -1.1616 -3.0113 2.3229 44 1 -0.1496 -4.3622 1.7259 45 1 0.5818 -2.5204 -1.1632 46 1 0.4428 -4.1099 -0.3740 47 1 -1.7152 -5.0006 0.2607 48 1 -4.1350 -5.0193 -0.1603 49 1 -6.5513 -4.7252 1.1958 50 1 -3.7983 -1.1720 -2.0711 51 1 -1.3832 -1.1824 -1.6235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355744238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:40 Heat of formation + Delta-G solvation = -24.840849 kcal Electronic energy + Delta-G solvation = -28391.224279 eV Core-core repulsion = 24869.060474 eV Total energy + Delta-G solvation = -3522.163806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.38871 -37.53552 -36.25659 -35.36228 -34.01412 -32.30526 -30.57628 -29.50060 -29.25565 -26.70067 -26.51349 -25.81049 -24.73239 -23.35406 -21.38401 -20.70456 -20.05097 -19.66696 -18.46615 -17.38116 -17.28562 -16.08944 -15.72947 -15.26273 -14.62724 -14.45857 -14.28726 -13.97174 -13.79831 -13.68290 -13.33778 -12.98091 -12.62742 -12.59415 -12.37080 -12.28941 -12.02300 -11.87101 -11.59382 -11.57013 -11.38234 -11.11513 -11.09878 -10.97554 -10.84373 -10.77124 -10.61399 -10.44990 -10.26544 -10.16658 -10.08888 -10.07321 -9.73531 -9.47707 -9.29755 -9.19059 -7.81854 -7.42503 -7.18154 -6.67757 -4.35091 2.73993 3.08085 3.09844 3.13970 3.16255 3.95754 4.01174 4.41166 4.67412 4.75934 4.86430 5.00689 5.16649 5.21799 5.32304 5.38111 5.42719 5.45438 5.61921 5.70988 5.74290 5.77034 5.84988 5.92033 5.96071 5.99448 6.06770 6.12488 6.15859 6.20239 6.24176 6.33498 6.39045 6.39958 6.43064 6.49400 6.52143 6.62965 6.79247 6.95698 7.11253 7.25443 7.28024 7.39284 7.40165 7.47388 7.57808 7.64813 7.88962 8.08629 8.13232 8.33414 8.67435 8.93253 8.99699 10.25837 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003490 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.737336 B = 8021.535934 C = 8594.805046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.084 4.084 5 C 0.102 3.898 6 C 0.062 3.938 7 O -0.569 6.569 8 C -0.121 4.121 9 C -0.133 4.133 10 C 0.047 3.953 11 N -0.496 5.496 12 C 0.102 3.898 13 C -0.203 4.203 14 C -0.095 4.095 15 C -0.157 4.157 16 C 0.111 3.889 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.803 5.803 21 Si 0.909 3.091 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.222 4.222 26 C -0.079 4.079 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.374 0.626 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.027 0.973 47 H 0.082 0.918 48 H 0.118 0.882 49 H 0.278 0.722 50 H 0.090 0.910 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.721 2.247 1.585 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.122 4.122 5 C 0.012 3.988 6 C -0.016 4.016 7 O -0.373 6.373 8 C -0.159 4.159 9 C -0.171 4.171 10 C -0.080 4.080 11 N -0.220 5.220 12 C -0.024 4.024 13 C -0.204 4.204 14 C -0.114 4.114 15 C -0.177 4.177 16 C 0.109 3.891 17 C -0.494 4.494 18 H 0.094 0.906 19 C -0.143 4.143 20 N -0.429 5.429 21 Si 0.734 3.266 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.241 4.241 26 C -0.098 4.098 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.139 0.861 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.220 0.780 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.100 0.900 48 H 0.136 0.864 49 H 0.088 0.912 50 H 0.108 0.892 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.156 2.814 2.373 14.627 hybrid contribution -0.331 -1.048 -0.625 1.264 sum 13.825 1.766 1.748 14.047 Atomic orbital electron populations 1.22592 0.93631 1.06223 1.00045 1.21041 0.97510 0.94592 0.97481 1.21874 0.99989 0.97179 1.01296 1.21551 0.99758 0.92628 0.98231 1.21736 0.87638 0.96171 0.93253 1.22956 0.81153 0.98994 0.98531 1.86453 1.17066 1.89647 1.44156 1.22699 0.97322 1.00207 0.95694 1.22753 0.94852 1.01832 0.97630 1.23047 0.99403 0.95354 0.90186 1.64187 1.10588 1.44755 1.02516 1.21075 0.95311 0.95672 0.90329 1.18841 0.92716 0.98231 1.10630 1.20524 0.94490 0.96529 0.99886 1.21335 0.92578 0.99523 1.04258 1.17638 0.92926 0.89555 0.88993 1.19620 0.91612 1.28592 1.09612 0.90641 1.25867 1.01125 0.93317 0.93964 1.69799 1.37239 1.28471 1.07420 0.86255 0.81926 0.78734 0.79728 1.18547 1.19885 1.20041 1.21032 0.93759 0.99011 1.10338 1.20498 0.94629 0.96133 0.98520 0.93743 0.95209 0.86051 0.92454 0.93088 0.93557 0.93224 0.91956 0.91928 0.93699 0.92516 0.77971 0.91792 0.91061 0.90941 0.91339 0.89687 0.93799 0.91267 0.95470 0.90030 0.86381 0.91161 0.89155 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 7.55 37.16 0.28 -2.35 16 2 C -0.09 -1.17 2.80 -90.62 -0.25 -1.42 16 3 C -0.15 -1.72 9.15 37.16 0.34 -1.38 16 4 C -0.08 -1.10 3.82 -26.73 -0.10 -1.20 16 5 C 0.10 1.35 0.64 -130.61 -0.08 1.27 16 6 C 0.06 0.75 4.35 37.16 0.16 0.91 16 7 O -0.57 -6.24 12.70 -35.23 -0.45 -6.69 16 8 C -0.12 -1.51 5.65 -24.91 -0.14 -1.65 16 9 C -0.13 -1.69 7.08 -24.59 -0.17 -1.87 16 10 C 0.05 0.73 5.61 -2.30 -0.01 0.72 16 11 N -0.50 -7.60 2.38 -217.17 -0.52 -8.12 16 12 C 0.10 1.68 2.83 -4.98 -0.01 1.67 16 13 C -0.20 -4.13 4.92 -104.33 -0.51 -4.64 16 14 C -0.10 -2.12 8.89 -39.66 -0.35 -2.47 16 15 C -0.16 -3.99 8.66 -38.87 -0.34 -4.33 16 16 C 0.11 2.92 5.55 -106.83 -0.59 2.33 16 17 C -0.46 -12.28 9.06 -37.74 -0.34 -12.62 16 18 H 0.08 1.93 7.86 -52.49 -0.41 1.52 16 19 C 0.07 1.84 5.27 -17.34 -0.09 1.75 16 20 N -0.80 -20.75 10.81 55.55 0.60 -20.15 16 21 Si 0.91 18.80 29.57 -169.99 -5.03 13.77 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 25 C -0.22 -5.35 9.80 -38.87 -0.38 -5.73 16 26 C -0.08 -1.70 8.54 -39.66 -0.34 -2.04 16 27 H 0.04 0.73 8.02 -51.93 -0.42 0.31 16 28 H 0.03 0.46 8.01 -51.93 -0.42 0.04 16 29 H 0.12 2.06 1.13 -51.93 -0.06 2.00 16 30 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 35 H 0.06 0.86 8.01 -51.93 -0.42 0.45 16 36 H 0.04 0.56 6.75 -51.93 -0.35 0.21 16 37 H 0.06 0.69 4.64 -51.93 -0.24 0.45 16 38 H 0.37 2.49 9.12 45.56 0.42 2.91 16 39 H 0.06 0.80 7.86 -51.93 -0.41 0.39 16 40 H 0.07 0.86 7.83 -51.93 -0.41 0.45 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.04 0.69 6.99 -51.92 -0.36 0.33 16 45 H 0.07 1.08 5.82 -51.92 -0.30 0.78 16 46 H 0.03 0.44 6.69 -51.93 -0.35 0.09 16 47 H 0.08 1.67 7.48 -52.49 -0.39 1.27 16 48 H 0.12 3.14 6.21 -52.48 -0.33 2.81 16 49 H 0.28 6.55 8.30 -40.82 -0.34 6.22 16 50 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 51 H 0.09 1.83 6.08 -52.49 -0.32 1.51 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -27.11 374.33 -10.26 -37.37 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -7.56 Total: 11.24 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: -2.95 Total: -33.06 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 0.08 Total: -28.27 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.45 Total: -6.69 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.11 -10.26 -37.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355744238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.525 kcal (2) G-P(sol) polarization free energy of solvation -27.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds