Wall clock time and date at job start Tue Mar 31 2020 12:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47450 * 2 1 4 4 C 1.52998 * 109.46888 * 120.00244 * 2 1 3 5 5 C 1.53004 * 109.47116 * 169.09328 * 4 2 1 6 6 C 1.53000 * 110.06800 * 186.47578 * 5 4 2 7 7 O 1.42906 * 109.46760 * 303.76923 * 6 5 4 8 8 C 1.53992 * 109.91637 * 65.26490 * 5 4 2 9 9 C 1.54595 * 105.14109 * 239.42357 * 8 5 4 10 10 C 1.54940 * 102.92206 * 338.04361 * 9 8 5 11 11 N 1.47904 * 109.91474 * 307.67725 * 5 4 2 12 12 C 1.46896 * 111.00015 * 265.19530 * 11 5 4 13 13 C 1.50702 * 109.46956 * 177.35998 * 12 11 5 14 14 C 1.38640 * 119.74904 * 275.23210 * 13 12 11 15 15 C 1.37616 * 120.24912 * 179.72402 * 14 13 12 16 16 C 1.40716 * 119.74422 * 0.57035 * 15 14 13 17 17 C 1.41394 * 120.24458 * 179.68733 * 16 15 14 18 18 H 1.08005 * 119.99873 * 212.11417 * 17 16 15 19 19 C 1.39941 * 120.00226 * 32.11646 * 17 16 15 20 20 N 1.30820 * 120.00000 * 7.29170 * 19 17 16 21 21 Si 1.86802 * 119.99990 * 187.29943 * 19 17 16 22 22 H 1.48493 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47404 * 119.99705 * 21 19 17 24 24 H 1.48506 * 109.46896 * 239.99557 * 21 19 17 25 25 C 1.40715 * 119.51021 * 359.70074 * 16 15 14 26 26 C 1.37619 * 119.74598 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.46584 * 299.99853 * 1 2 3 28 28 H 1.08999 * 109.47087 * 59.99549 * 1 2 3 29 29 H 1.09002 * 109.47058 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46881 * 239.99688 * 2 1 3 31 31 H 1.09006 * 109.46748 * 77.78402 * 3 2 1 32 32 H 1.08998 * 109.47436 * 197.78791 * 3 2 1 33 33 H 1.09000 * 109.46862 * 317.78789 * 3 2 1 34 34 H 1.09005 * 109.47303 * 49.09210 * 4 2 1 35 35 H 1.09002 * 109.47032 * 289.09109 * 4 2 1 36 36 H 1.08996 * 109.47258 * 63.76437 * 6 5 4 37 37 H 1.08997 * 109.46940 * 183.77178 * 6 5 4 38 38 H 0.96697 * 113.99387 * 184.99599 * 7 6 5 39 39 H 1.09001 * 110.30537 * 120.50553 * 8 5 4 40 40 H 1.09006 * 110.39263 * 358.38876 * 8 5 4 41 41 H 1.09004 * 110.72140 * 219.68566 * 9 8 5 42 42 H 1.08999 * 110.72175 * 96.40482 * 9 8 5 43 43 H 1.09001 * 110.66593 * 278.98093 * 10 9 8 44 44 H 1.08996 * 110.66571 * 155.84774 * 10 9 8 45 45 H 1.08999 * 109.47543 * 297.35535 * 12 11 5 46 46 H 1.08995 * 109.47142 * 57.36055 * 12 11 5 47 47 H 1.08003 * 119.87136 * 359.97353 * 14 13 12 48 48 H 1.07996 * 120.12870 * 180.27396 * 15 14 13 49 49 H 0.97003 * 120.00433 * 180.02562 * 20 19 17 50 50 H 1.08005 * 120.12479 * 180.02562 * 25 16 15 51 51 H 1.08001 * 119.87723 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5455 -0.9620 1.1203 6 6 4.0412 -1.8222 2.2845 7 8 3.6988 -1.1930 3.5211 8 6 4.2928 0.3843 1.1073 9 6 5.0472 0.4144 -0.2418 10 6 5.1433 -1.0855 -0.6185 11 7 3.8400 -1.6342 -0.1638 12 6 3.9139 -3.0911 0.0094 13 6 4.1504 -3.7445 -1.3279 14 6 3.0749 -4.0244 -2.1566 15 6 3.2796 -4.6157 -3.3823 16 6 4.5855 -4.9473 -3.7881 17 6 4.8073 -5.5612 -5.0424 18 1 5.6224 -6.2590 -5.1654 19 6 3.9708 -5.2645 -6.1243 20 7 3.0753 -4.3168 -6.0181 21 14 4.1327 -6.2221 -7.7201 22 1 5.2124 -7.2323 -7.5838 23 1 2.8491 -6.9061 -8.0193 24 1 4.4656 -5.2884 -8.8259 25 6 5.6690 -4.6637 -2.9363 26 6 5.4413 -4.0667 -1.7174 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.9562 1.8574 1.0045 32 1 3.0838 1.4588 -0.3139 33 1 1.4436 2.0387 -0.6905 34 1 1.5266 -1.6774 1.3518 35 1 1.8442 -0.1076 2.1285 36 1 3.5728 -2.8052 2.2352 37 1 5.1237 -1.9318 2.2200 38 1 4.0486 -1.6438 4.3017 39 1 4.9984 0.4333 1.9366 40 1 3.5855 1.2119 1.1638 41 1 6.0407 0.8455 -0.1185 42 1 4.4770 0.9644 -0.9904 43 1 5.9676 -1.5631 -0.0889 44 1 5.2562 -1.2050 -1.6960 45 1 4.7347 -3.3357 0.6835 46 1 2.9769 -3.4548 0.4308 47 1 2.0729 -3.7737 -1.8408 48 1 2.4407 -4.8289 -4.0282 49 1 2.4951 -4.1114 -6.7679 50 1 6.6755 -4.9136 -3.2379 51 1 6.2713 -3.8485 -1.0617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355744245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:44 Heat of formation + Delta-G solvation = -24.658634 kcal Electronic energy + Delta-G solvation = -28080.974936 eV Core-core repulsion = 24558.819032 eV Total energy + Delta-G solvation = -3522.155904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.35625 -37.57091 -36.33040 -35.44402 -33.80975 -32.31304 -30.70295 -29.55118 -29.13717 -27.19808 -26.37899 -25.82008 -24.61356 -23.37798 -21.24338 -20.80986 -19.99442 -19.76026 -18.51789 -17.45933 -17.23883 -16.00777 -15.44234 -15.25661 -14.81901 -14.43965 -14.26615 -14.21089 -13.97686 -13.69541 -13.45192 -13.05764 -12.68980 -12.44776 -12.34792 -12.22631 -12.02160 -11.90852 -11.76565 -11.54321 -11.41178 -11.28124 -11.05720 -10.94707 -10.86087 -10.78714 -10.52055 -10.40445 -10.34142 -10.26890 -10.17748 -9.85228 -9.84837 -9.53637 -9.30875 -9.18156 -8.00859 -7.42497 -7.18351 -6.64515 -4.34902 2.75821 3.07358 3.10398 3.14908 3.17143 3.97921 4.08144 4.39545 4.65057 4.77230 4.89471 5.08288 5.15943 5.24566 5.27213 5.35825 5.40920 5.45226 5.61302 5.66590 5.72504 5.77300 5.81245 5.85003 5.90130 5.99692 6.01801 6.08685 6.10708 6.13775 6.18795 6.27821 6.31121 6.34459 6.36326 6.41567 6.47447 6.58213 6.61570 6.89112 6.96937 7.12266 7.26295 7.30072 7.37629 7.45029 7.56101 7.65459 7.87176 8.09868 8.14521 8.33895 8.68648 8.94363 9.00090 10.30078 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.003430 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.647190 B = 8160.170389 C = 8786.193165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.162 4.162 4 C -0.080 4.080 5 C 0.097 3.903 6 C 0.057 3.943 7 O -0.568 6.568 8 C -0.137 4.137 9 C -0.130 4.130 10 C 0.043 3.957 11 N -0.485 5.485 12 C 0.106 3.894 13 C -0.198 4.198 14 C -0.082 4.082 15 C -0.155 4.155 16 C 0.112 3.888 17 C -0.468 4.468 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.805 5.805 21 Si 0.909 3.091 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.219 4.219 26 C -0.090 4.090 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.373 0.627 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.088 0.912 45 H 0.026 0.974 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.117 0.883 49 H 0.278 0.722 50 H 0.090 0.910 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 8.157 13.184 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.218 4.218 4 C -0.118 4.118 5 C 0.007 3.993 6 C -0.022 4.022 7 O -0.372 6.372 8 C -0.175 4.175 9 C -0.168 4.168 10 C -0.085 4.085 11 N -0.210 5.210 12 C -0.020 4.020 13 C -0.200 4.200 14 C -0.101 4.101 15 C -0.174 4.174 16 C 0.110 3.890 17 C -0.499 4.499 18 H 0.093 0.907 19 C -0.142 4.142 20 N -0.432 5.432 21 Si 0.734 3.266 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.201 1.201 25 C -0.239 4.239 26 C -0.109 4.109 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.219 0.781 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.055 0.945 44 H 0.106 0.894 45 H 0.044 0.956 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.135 0.865 49 H 0.088 0.912 50 H 0.108 0.892 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.451 8.779 12.267 15.154 hybrid contribution 1.062 -1.074 0.157 1.518 sum -0.389 7.706 12.424 14.625 Atomic orbital electron populations 1.21858 0.96355 1.01275 1.00770 1.21042 0.94236 0.95739 1.00139 1.22400 1.02431 0.96561 1.00443 1.21445 0.92926 1.00076 0.97363 1.21778 0.96542 0.93533 0.87445 1.22993 0.98093 0.96174 0.84913 1.86475 1.79014 1.56049 1.15618 1.22973 0.99519 0.97946 0.97020 1.22641 0.99831 0.96997 0.97332 1.23146 0.90234 0.93212 1.01859 1.65099 1.29004 1.04871 1.21985 1.20968 0.99080 0.86556 0.95420 1.18869 0.93611 1.10542 0.96972 1.20503 0.96197 0.98775 0.94605 1.21347 0.97595 1.03648 0.94804 1.17634 0.90845 0.88808 0.91756 1.19581 1.12580 1.23528 0.94170 0.90718 1.25843 0.93736 0.93993 1.00672 1.69790 1.16649 1.24391 1.32336 0.86252 0.79098 0.80188 0.81065 1.18624 1.19888 1.20064 1.21018 0.97410 1.08600 0.96855 1.20345 0.94498 0.99945 0.96065 0.93627 0.93133 0.93010 0.88622 0.93384 0.90588 0.93703 0.92703 0.91842 0.92993 0.94150 0.78089 0.92162 0.88642 0.91700 0.90373 0.94513 0.89353 0.95634 0.91590 0.89432 0.86505 0.91155 0.89200 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.09 37.16 0.34 -1.43 16 2 C -0.09 -1.23 2.80 -90.62 -0.25 -1.48 16 3 C -0.16 -1.90 7.57 37.16 0.28 -1.62 16 4 C -0.08 -1.06 3.83 -26.73 -0.10 -1.16 16 5 C 0.10 1.29 0.41 -130.53 -0.05 1.24 16 6 C 0.06 0.71 4.49 37.16 0.17 0.88 16 7 O -0.57 -6.33 12.68 -35.23 -0.45 -6.78 16 8 C -0.14 -1.68 5.18 -25.38 -0.13 -1.81 16 9 C -0.13 -1.64 6.64 -24.87 -0.17 -1.80 16 10 C 0.04 0.66 5.46 -1.89 -0.01 0.65 16 11 N -0.49 -7.55 3.66 -216.42 -0.79 -8.35 16 12 C 0.11 1.80 3.71 -4.98 -0.02 1.78 16 13 C -0.20 -4.13 4.88 -104.33 -0.51 -4.64 16 14 C -0.08 -1.88 9.69 -39.66 -0.38 -2.26 16 15 C -0.15 -3.98 8.64 -38.87 -0.34 -4.32 16 16 C 0.11 2.96 5.52 -106.83 -0.59 2.37 16 17 C -0.47 -12.47 9.05 -37.74 -0.34 -12.81 16 18 H 0.07 1.93 7.86 -52.48 -0.41 1.51 16 19 C 0.07 1.86 5.30 -17.34 -0.09 1.77 16 20 N -0.81 -21.10 10.90 55.55 0.61 -20.49 16 21 Si 0.91 18.96 29.57 -169.99 -5.03 13.94 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 C -0.22 -5.30 9.80 -38.87 -0.38 -5.68 16 26 C -0.09 -1.93 8.99 -39.66 -0.36 -2.29 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 1.53 7.06 -51.93 -0.37 1.16 16 31 H 0.05 0.52 7.11 -51.93 -0.37 0.16 16 32 H 0.08 0.90 3.38 -51.93 -0.18 0.73 16 33 H 0.04 0.50 8.01 -51.93 -0.42 0.09 16 34 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.06 0.83 7.61 -51.93 -0.40 0.44 16 36 H 0.05 0.66 6.30 -51.93 -0.33 0.33 16 37 H 0.04 0.50 7.84 -51.93 -0.41 0.09 16 38 H 0.37 2.54 9.12 45.56 0.42 2.96 16 39 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16 40 H 0.10 1.12 3.91 -51.93 -0.20 0.91 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.99 6.24 -51.93 -0.32 0.67 16 43 H 0.04 0.55 7.92 -51.93 -0.41 0.14 16 44 H 0.09 1.57 7.97 -51.93 -0.41 1.15 16 45 H 0.03 0.41 6.38 -51.93 -0.33 0.08 16 46 H 0.07 1.10 7.57 -51.93 -0.39 0.70 16 47 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 48 H 0.12 3.15 6.36 -52.49 -0.33 2.82 16 49 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 50 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 51 H 0.08 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -27.46 380.53 -10.64 -38.10 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.77 Total: 10.47 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: -2.94 Total: -32.62 kcal Atomic # 7 Polarization: -28.65 SS G_CDS: -0.19 Total: -28.84 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.45 Total: -6.78 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.46 -10.64 -38.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355744245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.440 kcal (2) G-P(sol) polarization free energy of solvation -27.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds