Wall clock time and date at job start Tue Mar 31 2020 12:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47450 * 2 1 4 4 C 1.52998 * 109.46888 * 120.00244 * 2 1 3 5 5 C 1.53004 * 109.47116 * 169.09328 * 4 2 1 6 6 C 1.53000 * 110.06800 * 186.47578 * 5 4 2 7 7 O 1.42906 * 109.46760 * 303.76923 * 6 5 4 8 8 C 1.53992 * 109.91637 * 65.26490 * 5 4 2 9 9 C 1.54595 * 105.14109 * 239.42357 * 8 5 4 10 10 C 1.54940 * 102.92206 * 338.04361 * 9 8 5 11 11 N 1.47904 * 109.91474 * 307.67725 * 5 4 2 12 12 C 1.46896 * 111.00015 * 265.19530 * 11 5 4 13 13 C 1.50702 * 109.46956 * 177.35998 * 12 11 5 14 14 C 1.38640 * 119.74904 * 275.23210 * 13 12 11 15 15 C 1.37616 * 120.24912 * 179.72402 * 14 13 12 16 16 C 1.40716 * 119.74422 * 0.57035 * 15 14 13 17 17 C 1.41394 * 120.24458 * 179.68733 * 16 15 14 18 18 H 1.08005 * 119.99873 * 212.11417 * 17 16 15 19 19 C 1.39941 * 120.00226 * 32.11646 * 17 16 15 20 20 N 1.30820 * 120.00000 * 7.29170 * 19 17 16 21 21 Si 1.86802 * 119.99990 * 187.29943 * 19 17 16 22 22 H 1.48493 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47404 * 119.99705 * 21 19 17 24 24 H 1.48506 * 109.46896 * 239.99557 * 21 19 17 25 25 C 1.40715 * 119.51021 * 359.70074 * 16 15 14 26 26 C 1.37619 * 119.74598 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.46584 * 299.99853 * 1 2 3 28 28 H 1.08999 * 109.47087 * 59.99549 * 1 2 3 29 29 H 1.09002 * 109.47058 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46881 * 239.99688 * 2 1 3 31 31 H 1.09006 * 109.46748 * 77.78402 * 3 2 1 32 32 H 1.08998 * 109.47436 * 197.78791 * 3 2 1 33 33 H 1.09000 * 109.46862 * 317.78789 * 3 2 1 34 34 H 1.09005 * 109.47303 * 49.09210 * 4 2 1 35 35 H 1.09002 * 109.47032 * 289.09109 * 4 2 1 36 36 H 1.08996 * 109.47258 * 63.76437 * 6 5 4 37 37 H 1.08997 * 109.46940 * 183.77178 * 6 5 4 38 38 H 0.96697 * 113.99387 * 184.99599 * 7 6 5 39 39 H 1.09001 * 110.30537 * 120.50553 * 8 5 4 40 40 H 1.09006 * 110.39263 * 358.38876 * 8 5 4 41 41 H 1.09004 * 110.72140 * 219.68566 * 9 8 5 42 42 H 1.08999 * 110.72175 * 96.40482 * 9 8 5 43 43 H 1.09001 * 110.66593 * 278.98093 * 10 9 8 44 44 H 1.08996 * 110.66571 * 155.84774 * 10 9 8 45 45 H 1.08999 * 109.47543 * 297.35535 * 12 11 5 46 46 H 1.08995 * 109.47142 * 57.36055 * 12 11 5 47 47 H 1.08003 * 119.87136 * 359.97353 * 14 13 12 48 48 H 1.07996 * 120.12870 * 180.27396 * 15 14 13 49 49 H 0.97003 * 120.00433 * 180.02562 * 20 19 17 50 50 H 1.08005 * 120.12479 * 180.02562 * 25 16 15 51 51 H 1.08001 * 119.87723 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5455 -0.9620 1.1203 6 6 4.0412 -1.8222 2.2845 7 8 3.6988 -1.1930 3.5211 8 6 4.2928 0.3843 1.1073 9 6 5.0472 0.4144 -0.2418 10 6 5.1433 -1.0855 -0.6185 11 7 3.8400 -1.6342 -0.1638 12 6 3.9139 -3.0911 0.0094 13 6 4.1504 -3.7445 -1.3279 14 6 3.0749 -4.0244 -2.1566 15 6 3.2796 -4.6157 -3.3823 16 6 4.5855 -4.9473 -3.7881 17 6 4.8073 -5.5612 -5.0424 18 1 5.6224 -6.2590 -5.1654 19 6 3.9708 -5.2645 -6.1243 20 7 3.0753 -4.3168 -6.0181 21 14 4.1327 -6.2221 -7.7201 22 1 5.2124 -7.2323 -7.5838 23 1 2.8491 -6.9061 -8.0193 24 1 4.4656 -5.2884 -8.8259 25 6 5.6690 -4.6637 -2.9363 26 6 5.4413 -4.0667 -1.7174 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.9562 1.8574 1.0045 32 1 3.0838 1.4588 -0.3139 33 1 1.4436 2.0387 -0.6905 34 1 1.5266 -1.6774 1.3518 35 1 1.8442 -0.1076 2.1285 36 1 3.5728 -2.8052 2.2352 37 1 5.1237 -1.9318 2.2200 38 1 4.0486 -1.6438 4.3017 39 1 4.9984 0.4333 1.9366 40 1 3.5855 1.2119 1.1638 41 1 6.0407 0.8455 -0.1185 42 1 4.4770 0.9644 -0.9904 43 1 5.9676 -1.5631 -0.0889 44 1 5.2562 -1.2050 -1.6960 45 1 4.7347 -3.3357 0.6835 46 1 2.9769 -3.4548 0.4308 47 1 2.0729 -3.7737 -1.8408 48 1 2.4407 -4.8289 -4.0282 49 1 2.4951 -4.1114 -6.7679 50 1 6.6755 -4.9136 -3.2379 51 1 6.2713 -3.8485 -1.0617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355744245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:42 Heat of formation + Delta-G solvation = -39.430149 kcal Electronic energy + Delta-G solvation = -28081.615477 eV Core-core repulsion = 24558.819032 eV Total energy + Delta-G solvation = -3522.796445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.48090 -39.34885 -37.22239 -36.64241 -35.53700 -33.69929 -31.92309 -31.27596 -30.81049 -28.40779 -27.62356 -27.07186 -25.69857 -24.93016 -22.89425 -22.35413 -21.34331 -21.01391 -19.63781 -19.17038 -18.38672 -17.21182 -16.98127 -16.61543 -16.01676 -15.76496 -15.64761 -15.51407 -15.29705 -15.00570 -14.75590 -14.41299 -14.22286 -13.81721 -13.69955 -13.43386 -13.37075 -13.26566 -13.15964 -12.90108 -12.76126 -12.65528 -12.50314 -12.26713 -12.21337 -11.98722 -11.93870 -11.83394 -11.59184 -11.36515 -11.28027 -11.22518 -11.19396 -11.05206 -10.82573 -10.76453 -9.31577 -9.27133 -9.01071 -8.53618 -6.34349 0.96868 1.16736 1.37909 1.48677 1.52550 2.22988 2.73608 3.09132 3.41716 3.64025 3.78616 3.83070 4.09815 4.10866 4.20663 4.24832 4.29310 4.33580 4.39628 4.42955 4.47231 4.57113 4.58606 4.64605 4.75887 4.79073 4.84387 4.92255 4.99319 5.03160 5.04037 5.07824 5.10441 5.13184 5.18054 5.20510 5.23104 5.34274 5.36496 5.39975 5.48580 5.57540 5.64095 5.75168 5.79680 5.94340 6.09929 6.14849 6.24341 6.32893 6.43145 6.74952 6.87938 6.98852 7.06704 8.43025 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.003430 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.647190 B = 8160.170389 C = 8786.193165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.158 4.158 4 C -0.075 4.075 5 C 0.095 3.905 6 C 0.063 3.937 7 O -0.575 6.575 8 C -0.130 4.130 9 C -0.123 4.123 10 C 0.042 3.958 11 N -0.497 5.497 12 C 0.114 3.886 13 C -0.180 4.180 14 C -0.088 4.088 15 C -0.176 4.176 16 C 0.078 3.922 17 C -0.506 4.506 18 H 0.071 0.929 19 C 0.031 3.969 20 N -0.840 5.840 21 Si 0.983 3.017 22 H -0.259 1.259 23 H -0.266 1.266 24 H -0.268 1.268 25 C -0.232 4.232 26 C -0.086 4.086 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.393 0.607 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.056 0.944 45 H 0.043 0.957 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.283 0.717 50 H 0.094 0.906 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 9.337 15.116 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.215 4.215 4 C -0.113 4.113 5 C 0.006 3.994 6 C -0.016 4.016 7 O -0.382 6.382 8 C -0.168 4.168 9 C -0.160 4.160 10 C -0.086 4.086 11 N -0.222 5.222 12 C -0.013 4.013 13 C -0.182 4.182 14 C -0.106 4.106 15 C -0.196 4.196 16 C 0.076 3.924 17 C -0.537 4.537 18 H 0.089 0.911 19 C -0.181 4.181 20 N -0.468 5.468 21 Si 0.804 3.196 22 H -0.183 1.183 23 H -0.190 1.190 24 H -0.193 1.193 25 C -0.252 4.252 26 C -0.105 4.105 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.243 0.757 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.113 0.887 49 H 0.094 0.906 50 H 0.113 0.887 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.938 9.961 14.234 17.398 hybrid contribution 0.891 -1.360 -0.255 1.646 sum -0.047 8.600 13.979 16.413 Atomic orbital electron populations 1.21836 0.95698 1.01024 1.01518 1.20968 0.94847 0.96429 0.98782 1.22358 1.02288 0.95490 1.01337 1.21401 0.92833 0.99605 0.97446 1.21818 0.96747 0.94132 0.86747 1.22805 0.98114 0.95564 0.85153 1.86421 1.79319 1.56414 1.15998 1.22942 0.99601 0.97412 0.96819 1.22600 1.00996 0.94989 0.97452 1.23096 0.90241 0.95336 0.99945 1.64972 1.29373 1.03870 1.23980 1.20871 1.00003 0.87468 0.92972 1.19281 0.92664 1.08218 0.98004 1.20684 0.97568 0.98368 0.94028 1.21263 0.96938 1.05530 0.95867 1.17945 0.91705 0.90081 0.92630 1.19813 1.13769 1.24838 0.95286 0.91070 1.26686 0.92992 0.94570 1.03885 1.69870 1.17550 1.25718 1.33646 0.85152 0.79269 0.78700 0.76499 1.18268 1.19045 1.19257 1.21217 0.97154 1.09070 0.97759 1.20630 0.95778 0.98622 0.95474 0.92163 0.93078 0.93800 0.91784 0.92033 0.90730 0.93410 0.93793 0.91099 0.93442 0.93749 0.75734 0.91364 0.87847 0.89823 0.90739 0.93912 0.92539 0.93885 0.91143 0.88375 0.88725 0.90628 0.88738 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.09 71.98 0.65 -2.67 16 2 C -0.09 -2.31 2.80 -10.79 -0.03 -2.34 16 3 C -0.16 -3.39 7.57 71.98 0.54 -2.85 16 4 C -0.07 -1.83 3.83 30.60 0.12 -1.72 16 5 C 0.10 2.31 0.41 3.67 0.00 2.31 16 6 C 0.06 1.36 4.49 71.98 0.32 1.69 16 7 O -0.57 -10.82 12.68 -148.98 -1.89 -12.71 16 8 C -0.13 -2.80 5.18 31.47 0.16 -2.64 16 9 C -0.12 -2.81 6.64 31.80 0.21 -2.60 16 10 C 0.04 1.21 5.46 86.65 0.47 1.68 16 11 N -0.50 -14.78 3.66 -838.61 -3.07 -17.85 16 12 C 0.11 3.66 3.71 85.56 0.32 3.97 16 13 C -0.18 -7.41 4.88 -19.67 -0.10 -7.51 16 14 C -0.09 -4.10 9.69 22.22 0.22 -3.89 16 15 C -0.18 -9.52 8.64 22.73 0.20 -9.32 16 16 C 0.08 4.33 5.52 -21.29 -0.12 4.21 16 17 C -0.51 -28.18 9.05 23.46 0.21 -27.97 16 18 H 0.07 3.84 7.86 -2.91 -0.02 3.81 16 19 C 0.03 1.62 5.30 85.26 0.45 2.07 16 20 N -0.84 -45.87 10.90 21.82 0.24 -45.63 16 21 Si 0.98 39.81 29.57 68.60 2.03 41.84 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 24 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 25 C -0.23 -11.46 9.80 22.73 0.22 -11.24 16 26 C -0.09 -3.67 8.99 22.22 0.20 -3.47 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 2.04 7.06 -2.39 -0.02 2.02 16 31 H 0.06 1.16 7.11 -2.38 -0.02 1.14 16 32 H 0.07 1.62 3.38 -2.39 -0.01 1.61 16 33 H 0.05 0.99 8.01 -2.39 -0.02 0.97 16 34 H 0.04 1.16 8.10 -2.38 -0.02 1.14 16 35 H 0.07 1.65 7.61 -2.39 -0.02 1.63 16 36 H 0.05 1.07 6.30 -2.39 -0.02 1.05 16 37 H 0.04 0.93 7.84 -2.39 -0.02 0.91 16 38 H 0.39 3.95 9.12 -74.06 -0.68 3.27 16 39 H 0.07 1.39 7.57 -2.39 -0.02 1.38 16 40 H 0.10 2.08 3.91 -2.38 -0.01 2.08 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 1.78 6.24 -2.39 -0.01 1.76 16 43 H 0.04 1.18 7.92 -2.39 -0.02 1.16 16 44 H 0.06 2.00 7.97 -2.39 -0.02 1.98 16 45 H 0.04 1.25 6.38 -2.39 -0.02 1.24 16 46 H 0.07 2.22 7.57 -2.39 -0.02 2.21 16 47 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 48 H 0.09 5.44 6.36 -2.91 -0.02 5.42 16 49 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 50 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 51 H 0.11 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -61.33 380.53 1.60 -59.73 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: 0.24 Total: 36.90 kcal Atomic # 6 Polarization: -66.33 SS G_CDS: 4.06 Total: -62.27 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -2.84 Total: -63.49 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.89 Total: -12.71 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -61.33 1.60 -59.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355744245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.299 kcal (2) G-P(sol) polarization free energy of solvation -61.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds