Wall clock time and date at job start Tue Mar 31 2020 12:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47195 * 2 1 4 4 C 1.53001 * 109.47005 * 119.99668 * 2 1 3 5 5 C 1.53007 * 109.46875 * 60.00053 * 4 2 1 6 6 C 1.53004 * 109.47235 * 300.00071 * 4 2 1 7 7 C 1.53001 * 109.47256 * 179.97438 * 4 2 1 8 8 N 1.46503 * 109.47206 * 180.02562 * 7 4 2 9 9 C 1.34774 * 119.99939 * 180.02562 * 8 7 4 10 10 O 1.21284 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11 16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11 17 17 N 1.31511 * 120.00099 * 6.55948 * 16 14 12 18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12 19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14 20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14 21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.09002 * 109.47203 * 300.00542 * 1 2 3 29 29 H 1.09000 * 109.46906 * 60.00018 * 1 2 3 30 30 H 1.08997 * 109.47735 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47203 * 239.99458 * 2 1 3 32 32 H 1.09001 * 109.47157 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47011 * 299.99322 * 3 2 1 34 34 H 1.08993 * 109.47509 * 60.00227 * 3 2 1 35 35 H 1.09000 * 109.46529 * 180.02562 * 5 4 2 36 36 H 1.08996 * 109.46768 * 299.99989 * 5 4 2 37 37 H 1.08991 * 109.46981 * 60.00170 * 5 4 2 38 38 H 1.08997 * 109.46766 * 299.99993 * 6 4 2 39 39 H 1.09001 * 109.47088 * 59.99934 * 6 4 2 40 40 H 1.09000 * 109.47028 * 179.97438 * 6 4 2 41 41 H 1.08997 * 109.47176 * 59.99743 * 7 4 2 42 42 H 1.09002 * 109.47082 * 299.99871 * 7 4 2 43 43 H 0.97001 * 120.00018 * 359.97438 * 8 7 4 44 44 H 1.08999 * 109.46642 * 59.99829 * 11 9 8 45 45 H 1.09002 * 109.46876 * 299.99722 * 11 9 8 46 46 H 0.96995 * 120.00371 * 354.73583 * 17 16 14 47 47 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 48 48 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 49 49 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 50 50 H 1.08002 * 119.99754 * 179.97438 * 26 25 24 51 51 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5298 -2.1637 1.2493 6 6 1.5299 0.0001 2.4985 7 6 3.5699 -0.7218 1.2490 8 7 4.0582 -1.4129 2.4450 9 6 5.3833 -1.5361 2.6582 10 8 6.1714 -1.0753 1.8598 11 6 5.8856 -2.2465 3.8887 12 6 7.4155 -2.2472 3.8884 13 1 7.7793 -1.2252 3.7817 14 6 7.9173 -3.0816 2.7381 15 1 7.3325 -3.9166 2.3813 16 6 9.1228 -2.7792 2.1413 17 7 9.8952 -1.8469 2.6549 18 14 9.6589 -3.6936 0.6032 19 1 10.4356 -4.8990 0.9893 20 1 8.4605 -4.1042 -0.1717 21 1 10.5070 -2.8045 -0.2309 22 6 7.9179 -2.8264 5.1858 23 6 7.6584 -4.1474 5.4994 24 6 8.1225 -4.6797 6.6877 25 6 8.8392 -3.8887 7.5662 26 6 9.0943 -2.5663 7.2548 27 6 8.6334 -2.0351 6.0648 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.8928 -2.6773 2.1396 36 1 0.4399 -2.1636 1.2493 37 1 1.8932 -2.6775 0.3594 38 1 1.8932 1.0278 2.4984 39 1 0.4399 0.0001 2.4985 40 1 1.8928 -0.5139 3.3885 41 1 3.9336 0.3057 1.2487 42 1 3.9329 -1.2360 0.3591 43 1 3.4279 -1.7811 3.0837 44 1 5.5221 -3.2741 3.8887 45 1 5.5223 -1.7325 4.7787 46 1 9.5842 -1.3195 3.4073 47 1 7.0951 -4.7643 4.8148 48 1 7.9229 -5.7129 6.9310 49 1 9.1996 -4.3040 8.4957 50 1 9.6539 -1.9482 7.9413 51 1 8.8331 -1.0020 5.8214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356982384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:51 Heat of formation + Delta-G solvation = -42.779462 kcal Electronic energy + Delta-G solvation = -27205.907210 eV Core-core repulsion = 23682.965528 eV Total energy + Delta-G solvation = -3522.941682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.72876 -38.67666 -37.92082 -34.40878 -33.76854 -31.40972 -30.98870 -30.09782 -29.07630 -28.16692 -27.27122 -25.88108 -24.61431 -22.97766 -22.15594 -21.63225 -20.19249 -19.52357 -18.28034 -16.94375 -16.38719 -15.93165 -15.62427 -15.19908 -14.90606 -14.56109 -14.43321 -14.05775 -13.79173 -13.72178 -13.61214 -13.25188 -12.84550 -12.80088 -12.48926 -12.30649 -12.27593 -12.11210 -11.99005 -11.93945 -11.80800 -11.49574 -11.34710 -11.28093 -10.88309 -10.68255 -10.57978 -10.47841 -10.42217 -10.40803 -10.11493 -10.02345 -9.62964 -8.96872 -8.61733 -8.48157 -8.22803 -8.12750 -7.61395 -6.20413 -3.87565 2.20337 2.26380 3.50428 3.55176 3.58381 3.71407 3.74292 4.53559 4.57681 4.62240 4.63442 4.69031 5.01530 5.13201 5.15855 5.35787 5.45531 5.48212 5.51371 5.60569 5.62829 5.64560 5.65036 5.72385 5.75964 5.77099 5.77911 5.83751 5.89779 5.93986 6.01782 6.02659 6.07641 6.12029 6.14243 6.19425 6.31657 6.32982 6.36434 6.44235 6.71868 6.80932 6.95022 6.97269 7.22350 7.24168 7.40248 7.74468 7.87459 8.10510 8.26166 8.54170 9.00560 9.09426 9.81608 11.20112 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.003533 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.428958 B = 7923.026200 C = 9180.027906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.155 4.155 4 C -0.071 4.071 5 C -0.144 4.144 6 C -0.145 4.145 7 C 0.131 3.869 8 N -0.747 5.747 9 C 0.512 3.488 10 O -0.501 6.501 11 C -0.117 4.117 12 C 0.072 3.928 13 H 0.051 0.949 14 C -0.566 4.566 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.907 5.907 18 Si 1.066 2.934 19 H -0.291 1.291 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.030 4.030 23 C -0.109 4.109 24 C -0.130 4.130 25 C -0.154 4.154 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.391 0.609 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.270 0.730 47 H 0.114 0.886 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.107 0.893 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.124 1.710 1.781 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 C -0.212 4.212 4 C -0.071 4.071 5 C -0.201 4.201 6 C -0.202 4.202 7 C 0.007 3.993 8 N -0.403 5.403 9 C 0.298 3.702 10 O -0.373 6.373 11 C -0.158 4.158 12 C 0.053 3.947 13 H 0.069 0.931 14 C -0.604 4.604 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.543 5.543 18 Si 0.895 3.105 19 H -0.219 1.219 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.031 4.031 23 C -0.127 4.127 24 C -0.148 4.148 25 C -0.172 4.172 26 C -0.143 4.143 27 C -0.149 4.149 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.225 0.775 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.132 0.868 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.125 0.875 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.248 1.903 0.088 16.360 hybrid contribution -1.452 -0.160 1.356 1.993 sum -17.700 1.743 1.444 17.845 Atomic orbital electron populations 1.21938 0.95238 1.01791 1.01645 1.21055 0.95676 0.96226 0.97247 1.21990 1.01752 0.95826 1.01633 1.20793 0.94543 0.95910 0.95873 1.21931 1.00817 0.95126 1.02230 1.21976 1.00842 1.00660 0.96719 1.21303 0.91781 0.97483 0.88742 1.46223 1.07570 1.61055 1.25450 1.20831 0.81055 0.79858 0.88422 1.90742 1.54635 1.45924 1.45981 1.21679 1.00414 0.99779 0.93886 1.17864 0.88306 0.98294 0.90233 0.93121 1.21541 1.08296 1.15433 1.15084 0.93696 1.25566 0.93335 0.97401 1.01033 1.70721 1.36809 1.21352 1.25369 0.83598 0.75443 0.75434 0.75978 1.21855 1.21692 1.21119 1.20836 0.94120 0.93620 0.94485 1.20916 1.00651 0.95459 0.95634 1.21010 0.99650 0.98793 0.95316 1.20821 1.02098 0.94592 0.99658 1.20964 1.00540 0.95456 0.97291 1.21068 1.00004 0.99723 0.94061 0.92412 0.92931 0.92438 0.91015 0.91999 0.92877 0.92365 0.92533 0.92309 0.92420 0.92148 0.92329 0.92667 0.91776 0.92082 0.77512 0.90423 0.91830 0.91850 0.86758 0.87469 0.87602 0.87478 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.49 37.15 0.32 -0.80 16 2 C -0.08 -0.75 2.28 -90.62 -0.21 -0.95 16 3 C -0.15 -1.42 8.49 37.16 0.32 -1.10 16 4 C -0.07 -0.69 0.33 -154.50 -0.05 -0.75 16 5 C -0.14 -1.33 7.95 37.16 0.30 -1.03 16 6 C -0.14 -1.29 7.60 37.16 0.28 -1.01 16 7 C 0.13 1.79 4.21 -4.04 -0.02 1.78 16 8 N -0.75 -11.16 4.96 -60.29 -0.30 -11.46 16 9 C 0.51 10.32 7.58 -10.98 -0.08 10.24 16 10 O -0.50 -12.71 15.02 5.55 0.08 -12.63 16 11 C -0.12 -2.30 4.94 -27.88 -0.14 -2.44 16 12 C 0.07 1.74 1.31 -92.92 -0.12 1.62 16 13 H 0.05 1.38 6.23 -51.93 -0.32 1.06 16 14 C -0.57 -15.55 6.40 -34.44 -0.22 -15.77 16 15 H 0.04 1.24 7.82 -52.49 -0.41 0.83 16 16 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 17 N -0.91 -27.96 13.63 55.43 0.76 -27.21 16 18 Si 1.07 26.71 29.91 -169.99 -5.08 21.62 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 16 23 C -0.11 -2.23 8.88 -39.59 -0.35 -2.58 16 24 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 25 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 26 C -0.12 -2.31 10.05 -39.59 -0.40 -2.71 16 27 C -0.13 -2.76 9.67 -39.59 -0.38 -3.14 16 28 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 35 H 0.06 0.53 6.86 -51.93 -0.36 0.17 16 36 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 39 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 40 H 0.05 0.49 6.86 -51.93 -0.36 0.14 16 41 H 0.06 0.95 6.43 -51.93 -0.33 0.61 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.39 4.71 6.16 -40.82 -0.25 4.46 16 44 H 0.08 1.43 7.86 -51.93 -0.41 1.02 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.27 8.24 6.68 -40.82 -0.27 7.96 16 47 H 0.11 2.29 7.80 -52.48 -0.41 1.88 16 48 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 49 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 50 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 51 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -33.07 392.02 -9.27 -42.33 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -8.48 Total: 6.24 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -2.15 Total: -24.81 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.46 Total: -38.67 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 26.71 SS G_CDS: -5.08 Total: 21.62 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.07 -9.27 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356982384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.445 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds