Wall clock time and date at job start Tue Mar 31 2020 12:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47195 * 2 1 4 4 C 1.53001 * 109.47005 * 119.99668 * 2 1 3 5 5 C 1.53007 * 109.46875 * 60.00053 * 4 2 1 6 6 C 1.53004 * 109.47235 * 300.00071 * 4 2 1 7 7 C 1.53001 * 109.47256 * 179.97438 * 4 2 1 8 8 N 1.46503 * 109.47206 * 180.02562 * 7 4 2 9 9 C 1.34774 * 119.99939 * 180.02562 * 8 7 4 10 10 O 1.21284 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11 16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11 17 17 N 1.31511 * 120.00099 * 6.55948 * 16 14 12 18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12 19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14 20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14 21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.09002 * 109.47203 * 300.00542 * 1 2 3 29 29 H 1.09000 * 109.46906 * 60.00018 * 1 2 3 30 30 H 1.08997 * 109.47735 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47203 * 239.99458 * 2 1 3 32 32 H 1.09001 * 109.47157 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47011 * 299.99322 * 3 2 1 34 34 H 1.08993 * 109.47509 * 60.00227 * 3 2 1 35 35 H 1.09000 * 109.46529 * 180.02562 * 5 4 2 36 36 H 1.08996 * 109.46768 * 299.99989 * 5 4 2 37 37 H 1.08991 * 109.46981 * 60.00170 * 5 4 2 38 38 H 1.08997 * 109.46766 * 299.99993 * 6 4 2 39 39 H 1.09001 * 109.47088 * 59.99934 * 6 4 2 40 40 H 1.09000 * 109.47028 * 179.97438 * 6 4 2 41 41 H 1.08997 * 109.47176 * 59.99743 * 7 4 2 42 42 H 1.09002 * 109.47082 * 299.99871 * 7 4 2 43 43 H 0.97001 * 120.00018 * 359.97438 * 8 7 4 44 44 H 1.08999 * 109.46642 * 59.99829 * 11 9 8 45 45 H 1.09002 * 109.46876 * 299.99722 * 11 9 8 46 46 H 0.96995 * 120.00371 * 354.73583 * 17 16 14 47 47 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 48 48 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 49 49 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 50 50 H 1.08002 * 119.99754 * 179.97438 * 26 25 24 51 51 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5298 -2.1637 1.2493 6 6 1.5299 0.0001 2.4985 7 6 3.5699 -0.7218 1.2490 8 7 4.0582 -1.4129 2.4450 9 6 5.3833 -1.5361 2.6582 10 8 6.1714 -1.0753 1.8598 11 6 5.8856 -2.2465 3.8887 12 6 7.4155 -2.2472 3.8884 13 1 7.7793 -1.2252 3.7817 14 6 7.9173 -3.0816 2.7381 15 1 7.3325 -3.9166 2.3813 16 6 9.1228 -2.7792 2.1413 17 7 9.8952 -1.8469 2.6549 18 14 9.6589 -3.6936 0.6032 19 1 10.4356 -4.8990 0.9893 20 1 8.4605 -4.1042 -0.1717 21 1 10.5070 -2.8045 -0.2309 22 6 7.9179 -2.8264 5.1858 23 6 7.6584 -4.1474 5.4994 24 6 8.1225 -4.6797 6.6877 25 6 8.8392 -3.8887 7.5662 26 6 9.0943 -2.5663 7.2548 27 6 8.6334 -2.0351 6.0648 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.8928 -2.6773 2.1396 36 1 0.4399 -2.1636 1.2493 37 1 1.8932 -2.6775 0.3594 38 1 1.8932 1.0278 2.4984 39 1 0.4399 0.0001 2.4985 40 1 1.8928 -0.5139 3.3885 41 1 3.9336 0.3057 1.2487 42 1 3.9329 -1.2360 0.3591 43 1 3.4279 -1.7811 3.0837 44 1 5.5221 -3.2741 3.8887 45 1 5.5223 -1.7325 4.7787 46 1 9.5842 -1.3195 3.4073 47 1 7.0951 -4.7643 4.8148 48 1 7.9229 -5.7129 6.9310 49 1 9.1996 -4.3040 8.4957 50 1 9.6539 -1.9482 7.9413 51 1 8.8331 -1.0020 5.8214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356982384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:51 Heat of formation + Delta-G solvation = -61.100986 kcal Electronic energy + Delta-G solvation = -27206.701691 eV Core-core repulsion = 23682.965528 eV Total energy + Delta-G solvation = -3523.736163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.04087 -40.08394 -39.28689 -36.16402 -35.19105 -33.30318 -32.02458 -31.60984 -30.52789 -29.02228 -28.16223 -27.18525 -26.18781 -24.63153 -23.27955 -23.03122 -21.75920 -21.16000 -19.23988 -18.74411 -17.99304 -17.30520 -16.96507 -16.51786 -16.08028 -15.95069 -15.67546 -15.59060 -15.27922 -15.03891 -14.88122 -14.45281 -14.37979 -14.04275 -13.95854 -13.78341 -13.44310 -13.28607 -13.09973 -12.95808 -12.78610 -12.68019 -12.65672 -12.59697 -12.21096 -12.07717 -12.01959 -11.97292 -11.73272 -11.49242 -11.36187 -11.28344 -11.23007 -10.73205 -10.62388 -10.30911 -9.92722 -9.64509 -9.27321 -8.45501 -6.10902 0.67478 0.73804 1.45803 1.58087 1.71318 1.90854 2.37842 2.59923 3.10388 3.38443 3.67298 3.77108 3.83321 4.10700 4.13123 4.22476 4.28161 4.29759 4.32353 4.42480 4.43685 4.48592 4.60731 4.63866 4.71147 4.75182 4.81620 4.82853 4.86734 4.88709 4.98024 5.00328 5.06510 5.09837 5.11431 5.18387 5.18815 5.23431 5.28881 5.37309 5.40957 5.42549 5.56466 5.62198 5.63594 5.74265 5.82294 5.94356 6.24051 6.30579 6.39217 6.73071 6.78704 7.54047 7.64750 8.94975 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.003533 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.428958 B = 7923.026200 C = 9180.027906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.061 4.061 5 C -0.143 4.143 6 C -0.144 4.144 7 C 0.131 3.869 8 N -0.722 5.722 9 C 0.509 3.491 10 O -0.564 6.564 11 C -0.111 4.111 12 C 0.074 3.926 13 H 0.006 0.994 14 C -0.556 4.556 15 H 0.038 0.962 16 C -0.025 4.025 17 N -0.943 5.943 18 Si 1.101 2.899 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.291 1.291 22 C -0.054 4.054 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.145 4.145 26 C -0.125 4.125 27 C -0.154 4.154 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.409 0.591 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.258 0.742 47 H 0.114 0.886 48 H 0.143 0.857 49 H 0.147 0.853 50 H 0.135 0.865 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.444 -0.151 3.671 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.212 4.212 4 C -0.061 4.061 5 C -0.201 4.201 6 C -0.201 4.201 7 C 0.007 3.993 8 N -0.377 5.377 9 C 0.296 3.704 10 O -0.441 6.441 11 C -0.151 4.151 12 C 0.055 3.945 13 H 0.024 0.976 14 C -0.594 4.594 15 H 0.056 0.944 16 C -0.223 4.223 17 N -0.581 5.581 18 Si 0.926 3.074 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.218 1.218 22 C -0.055 4.055 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.162 4.162 26 C -0.143 4.143 27 C -0.172 4.172 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.247 0.753 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.068 0.932 47 H 0.132 0.868 48 H 0.161 0.839 49 H 0.165 0.835 50 H 0.153 0.847 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.644 0.015 2.010 18.752 hybrid contribution -0.817 0.436 0.857 1.262 sum -19.461 0.451 2.868 19.677 Atomic orbital electron populations 1.21900 0.93276 1.02501 1.02410 1.21060 0.97192 0.95649 0.96309 1.21983 1.00295 0.96382 1.02494 1.20738 0.91152 0.97055 0.97160 1.21943 1.02239 0.94105 1.01764 1.21983 1.02200 1.00091 0.95831 1.21397 0.94843 0.96006 0.87076 1.45963 1.06172 1.59650 1.25935 1.21006 0.82216 0.79201 0.87943 1.90723 1.56581 1.48808 1.47977 1.21579 0.97590 1.01128 0.94832 1.17691 0.90991 0.95218 0.90650 0.97573 1.21800 1.07311 1.14623 1.15642 0.94357 1.26724 0.94400 0.97943 1.03260 1.70813 1.37784 1.23232 1.26297 0.83136 0.75622 0.75152 0.73459 1.19773 1.20654 1.21767 1.20612 0.95780 0.94844 0.94260 1.21006 1.01545 0.94553 0.97060 1.21412 0.98277 1.00526 0.93956 1.21312 1.00404 0.93754 1.00769 1.21298 0.99939 0.96630 0.96410 1.21124 1.01054 0.99377 0.95659 0.91563 0.92309 0.91716 0.91960 0.94268 0.91924 0.91613 0.92501 0.90055 0.93427 0.92711 0.90157 0.92563 0.93199 0.94344 0.75333 0.88652 0.89071 0.93174 0.86800 0.83882 0.83512 0.84727 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.49 71.98 0.61 -1.16 16 2 C -0.08 -1.41 2.28 -10.80 -0.02 -1.44 16 3 C -0.15 -2.79 8.49 71.98 0.61 -2.18 16 4 C -0.06 -1.13 0.33 -52.18 -0.02 -1.14 16 5 C -0.14 -2.37 7.95 71.98 0.57 -1.80 16 6 C -0.14 -2.26 7.60 71.98 0.55 -1.71 16 7 C 0.13 3.69 4.21 86.38 0.36 4.05 16 8 N -0.72 -21.67 4.96 -463.05 -2.30 -23.97 16 9 C 0.51 21.22 7.58 87.66 0.66 21.89 16 10 O -0.56 -30.41 15.02 -3.04 -0.05 -30.45 16 11 C -0.11 -4.42 4.94 29.85 0.15 -4.27 16 12 C 0.07 3.72 1.31 -12.29 -0.02 3.70 16 13 H 0.01 0.36 6.23 -2.39 -0.01 0.34 16 14 C -0.56 -31.61 6.40 25.60 0.16 -31.45 16 15 H 0.04 2.17 7.82 -2.91 -0.02 2.14 16 16 C -0.02 -1.51 5.45 84.65 0.46 -1.05 16 17 N -0.94 -61.13 13.63 21.45 0.29 -60.84 16 18 Si 1.10 55.28 29.91 68.60 2.05 57.34 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 22 C -0.05 -2.47 4.77 -19.87 -0.09 -2.56 16 23 C -0.12 -4.93 8.88 22.27 0.20 -4.74 16 24 C -0.12 -4.07 10.05 22.27 0.22 -3.85 16 25 C -0.14 -4.50 10.05 22.27 0.22 -4.28 16 26 C -0.12 -4.39 10.05 22.27 0.22 -4.16 16 27 C -0.15 -6.62 9.67 22.27 0.22 -6.41 16 28 H 0.07 0.72 6.43 -2.39 -0.02 0.71 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.72 6.43 -2.39 -0.02 0.70 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 0.87 6.43 -2.39 -0.02 0.86 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.08 6.43 -2.39 -0.02 1.06 16 35 H 0.06 0.93 6.86 -2.39 -0.02 0.92 16 36 H 0.08 1.01 6.43 -2.39 -0.02 1.00 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.94 6.43 -2.39 -0.02 0.92 16 39 H 0.08 0.95 6.43 -2.39 -0.02 0.94 16 40 H 0.06 0.87 6.86 -2.39 -0.02 0.85 16 41 H 0.05 1.57 6.43 -2.39 -0.02 1.55 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.41 9.31 6.16 -92.71 -0.57 8.73 16 44 H 0.10 3.43 7.86 -2.39 -0.02 3.42 16 45 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.26 16.83 6.68 -92.71 -0.62 16.21 16 47 H 0.11 4.45 7.80 -2.91 -0.02 4.42 16 48 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 49 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 50 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 51 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -76.98 392.02 5.56 -71.42 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.48 Total: 29.07 kcal Atomic # 6 Polarization: -47.64 SS G_CDS: 5.07 Total: -42.57 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.00 Total: -84.81 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.05 Total: -30.45 kcal Atomic # 14 Polarization: 55.28 SS G_CDS: 2.05 Total: 57.34 kcal Total: -76.98 5.56 -71.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356982384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.316 kcal (2) G-P(sol) polarization free energy of solvation -76.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds