Wall clock time and date at job start Tue Mar 31 2020 12:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47139 * 2 1 4 4 C 1.52999 * 109.47399 * 119.99900 * 2 1 3 5 5 C 1.52997 * 109.46893 * 59.99950 * 4 2 1 6 6 C 1.53007 * 109.47176 * 300.00422 * 4 2 1 7 7 C 1.52993 * 109.47399 * 180.02562 * 4 2 1 8 8 N 1.46505 * 109.47066 * 179.97438 * 7 4 2 9 9 C 1.34777 * 119.99960 * 179.97438 * 8 7 4 10 10 O 1.21282 * 119.99737 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00194 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47010 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47465 * 305.00010 * 12 11 9 14 14 C 1.50698 * 109.47080 * 65.00685 * 12 11 9 15 15 H 1.08002 * 120.00223 * 26.94016 * 14 12 11 16 16 C 1.37886 * 120.00006 * 206.93845 * 14 12 11 17 17 N 1.31507 * 120.00030 * 186.61954 * 16 14 12 18 18 Si 1.86801 * 119.99698 * 6.90022 * 16 14 12 19 19 H 1.48503 * 109.46742 * 274.25466 * 18 16 14 20 20 H 1.48500 * 109.47460 * 34.25082 * 18 16 14 21 21 H 1.48499 * 109.46928 * 154.25467 * 18 16 14 22 22 C 1.50706 * 109.46940 * 184.99987 * 12 11 9 23 23 C 1.38233 * 119.99857 * 297.92917 * 22 12 11 24 24 C 1.38240 * 119.99757 * 179.78388 * 23 22 12 25 25 C 1.38239 * 119.99979 * 0.44453 * 24 23 22 26 26 C 1.38242 * 120.00017 * 359.80708 * 25 24 23 27 27 C 1.38230 * 119.99928 * 118.19592 * 22 12 11 28 28 H 1.09000 * 109.47323 * 300.00044 * 1 2 3 29 29 H 1.09004 * 109.47470 * 60.00333 * 1 2 3 30 30 H 1.09000 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47323 * 239.99956 * 2 1 3 32 32 H 1.09008 * 109.47310 * 59.99932 * 3 2 1 33 33 H 1.09000 * 109.47726 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47130 * 300.00384 * 3 2 1 35 35 H 1.09007 * 109.47380 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47726 * 300.00376 * 5 4 2 37 37 H 1.09000 * 109.47049 * 60.00422 * 5 4 2 38 38 H 1.09000 * 109.46965 * 299.99754 * 6 4 2 39 39 H 1.09001 * 109.46657 * 59.99222 * 6 4 2 40 40 H 1.08994 * 109.47169 * 179.97438 * 6 4 2 41 41 H 1.09000 * 109.46918 * 60.00137 * 7 4 2 42 42 H 1.09000 * 109.47323 * 300.00056 * 7 4 2 43 43 H 0.96995 * 120.00055 * 0.02562 * 8 7 4 44 44 H 1.09000 * 109.46914 * 60.00574 * 11 9 8 45 45 H 1.09000 * 109.47087 * 300.00639 * 11 9 8 46 46 H 0.96994 * 119.99996 * 180.27656 * 17 16 14 47 47 H 1.07994 * 120.00554 * 359.97438 * 23 22 12 48 48 H 1.07996 * 120.00426 * 180.26872 * 24 23 22 49 49 H 1.08000 * 120.00114 * 179.82966 * 25 24 23 50 50 H 1.07993 * 120.00100 * 180.02562 * 26 25 24 51 51 H 1.07999 * 120.00162 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2492 6 6 1.5299 0.0000 2.4985 7 6 3.5699 -0.7207 1.2495 8 7 4.0583 -1.4107 2.4461 9 6 5.3833 -1.5338 2.6594 10 8 6.1714 -1.0728 1.8611 11 6 5.8857 -2.2441 3.8899 12 6 7.4157 -2.2434 3.8902 13 1 7.7795 -2.6774 2.9589 14 6 7.9173 -0.8278 4.0145 15 1 7.3108 -0.0810 4.5053 16 6 9.1508 -0.4859 3.5017 17 7 9.6456 0.7123 3.7226 18 14 10.1153 -1.7222 2.4864 19 1 10.9087 -2.5933 3.3903 20 1 9.1741 -2.5557 1.6961 21 1 11.0301 -1.0004 1.5658 22 6 7.9182 -3.0583 5.0542 23 6 7.6194 -2.6731 6.3477 24 6 8.0765 -3.4231 7.4152 25 6 8.8401 -4.5531 7.1894 26 6 9.1432 -4.9354 5.8959 27 6 8.6824 -4.1878 4.8284 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.8930 -2.6775 2.1395 36 1 0.4400 -2.1638 1.2492 37 1 1.8934 -2.6775 0.3593 38 1 1.8932 1.0277 2.4985 39 1 0.4399 0.0000 2.4984 40 1 1.8929 -0.5140 3.3885 41 1 3.9328 0.3072 1.2498 42 1 3.9337 -1.2342 0.3596 43 1 3.4280 -1.7797 3.0843 44 1 5.5225 -3.2718 3.8898 45 1 5.5222 -1.7303 4.7799 46 1 10.5115 0.9541 3.3585 47 1 7.0263 -1.7880 6.5243 48 1 7.8395 -3.1247 8.4257 49 1 9.1996 -5.1375 8.0234 50 1 9.7394 -5.8184 5.7195 51 1 8.9190 -4.4865 3.8179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356982389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:56 Heat of formation + Delta-G solvation = -36.702726 kcal Electronic energy + Delta-G solvation = -27232.021665 eV Core-core repulsion = 23709.343490 eV Total energy + Delta-G solvation = -3522.678175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.72749 -38.74099 -37.95363 -34.29141 -33.72610 -31.65798 -31.07011 -30.19418 -29.12778 -28.17969 -27.28976 -26.23993 -25.04136 -22.77982 -22.14639 -21.77312 -20.14165 -19.24985 -18.21850 -16.93214 -16.63680 -15.98971 -15.61209 -15.19822 -14.89016 -14.59686 -14.44240 -14.22687 -13.93587 -13.73421 -13.56767 -13.22528 -12.85463 -12.70208 -12.57730 -12.38461 -12.29333 -12.16275 -12.02286 -11.95839 -11.82539 -11.72815 -11.35600 -11.27286 -11.03806 -10.78120 -10.57395 -10.49488 -10.44869 -10.40232 -10.30087 -9.86271 -9.57626 -9.12075 -8.87667 -8.50849 -8.39912 -8.19557 -7.79887 -5.95853 -3.91235 2.10831 2.16633 3.43267 3.48636 3.52897 3.53630 3.74187 4.54084 4.55582 4.58808 4.60002 4.65408 5.03503 5.16163 5.18141 5.31323 5.38521 5.50981 5.53021 5.53311 5.57304 5.60606 5.66161 5.70150 5.73272 5.76751 5.80777 5.86017 5.93085 5.94624 5.97709 6.01972 6.05305 6.08430 6.11809 6.15509 6.25610 6.34100 6.35096 6.40007 6.62298 6.71669 6.84662 6.97095 7.07806 7.15685 7.28419 7.61777 7.73979 7.84887 8.10370 8.56165 9.03178 9.08144 9.68813 11.17401 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.003482 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.291471 B = 8038.416617 C = 9052.209175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.156 4.156 4 C -0.071 4.071 5 C -0.143 4.143 6 C -0.146 4.146 7 C 0.130 3.870 8 N -0.746 5.746 9 C 0.512 3.488 10 O -0.502 6.502 11 C -0.115 4.115 12 C 0.048 3.952 13 H 0.053 0.947 14 C -0.481 4.481 15 H 0.071 0.929 16 C 0.084 3.916 17 N -0.900 5.900 18 Si 0.867 3.133 19 H -0.275 1.275 20 H -0.261 1.261 21 H -0.292 1.292 22 C -0.039 4.039 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.150 4.150 26 C -0.124 4.124 27 C -0.139 4.139 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.391 0.609 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.262 0.738 47 H 0.120 0.880 48 H 0.110 0.890 49 H 0.108 0.892 50 H 0.108 0.892 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.424 -6.464 -1.653 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 C -0.213 4.213 4 C -0.071 4.071 5 C -0.200 4.200 6 C -0.203 4.203 7 C 0.006 3.994 8 N -0.402 5.402 9 C 0.298 3.702 10 O -0.374 6.374 11 C -0.156 4.156 12 C 0.029 3.971 13 H 0.071 0.929 14 C -0.518 4.518 15 H 0.089 0.911 16 C -0.118 4.118 17 N -0.538 5.538 18 Si 0.695 3.305 19 H -0.201 1.201 20 H -0.186 1.186 21 H -0.218 1.218 22 C -0.039 4.039 23 C -0.119 4.119 24 C -0.145 4.145 25 C -0.168 4.168 26 C -0.143 4.143 27 C -0.157 4.157 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.226 0.774 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.071 0.929 47 H 0.138 0.862 48 H 0.128 0.872 49 H 0.126 0.874 50 H 0.126 0.874 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.643 -5.978 -2.297 17.833 hybrid contribution 0.482 -0.642 -0.217 0.832 sum -16.161 -6.620 -2.514 17.645 Atomic orbital electron populations 1.21940 0.95264 1.01724 1.01691 1.21049 0.95651 0.96294 0.97149 1.21999 1.01860 0.95749 1.01685 1.20792 0.94546 0.95835 0.95964 1.21929 1.00874 0.95188 1.02057 1.21981 1.00771 1.00861 0.96656 1.21313 0.91787 0.97818 0.88435 1.46188 1.07524 1.60999 1.25469 1.20798 0.81141 0.79994 0.88248 1.90737 1.54674 1.45824 1.46189 1.21610 0.99478 0.98760 0.95709 1.18240 0.89806 0.96740 0.92342 0.92870 1.20590 1.02655 0.91449 1.37065 0.91091 1.24859 0.97016 0.94825 0.95137 1.69886 1.18511 1.20046 1.45315 0.86963 0.79970 0.82236 0.81300 1.20067 1.18610 1.21845 1.20784 0.94613 0.91914 0.96616 1.20952 1.00294 0.98688 0.91968 1.21057 0.99115 0.95840 0.98449 1.20857 1.01366 0.98328 0.96258 1.20954 1.00511 0.99716 0.93072 1.21060 1.00305 0.96091 0.98284 0.92350 0.92959 0.92497 0.91125 0.92269 0.91901 0.92915 0.92542 0.92304 0.92554 0.91998 0.92373 0.92591 0.91460 0.92261 0.77444 0.91413 0.89859 0.92877 0.86242 0.87171 0.87408 0.87360 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.49 37.15 0.32 -0.80 16 2 C -0.08 -0.74 2.28 -90.63 -0.21 -0.95 16 3 C -0.16 -1.49 8.49 37.16 0.32 -1.17 16 4 C -0.07 -0.69 0.33 -154.51 -0.05 -0.74 16 5 C -0.14 -1.24 7.95 37.16 0.30 -0.95 16 6 C -0.15 -1.34 7.59 37.16 0.28 -1.06 16 7 C 0.13 1.76 4.21 -4.04 -0.02 1.75 16 8 N -0.75 -10.87 4.96 -60.29 -0.30 -11.17 16 9 C 0.51 10.04 7.58 -10.99 -0.08 9.96 16 10 O -0.50 -12.48 14.98 5.56 0.08 -12.40 16 11 C -0.12 -2.16 4.93 -27.88 -0.14 -2.30 16 12 C 0.05 1.11 1.21 -92.92 -0.11 1.00 16 13 H 0.05 1.33 4.87 -51.93 -0.25 1.08 16 14 C -0.48 -13.36 6.97 -34.44 -0.24 -13.60 16 15 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 16 C 0.08 2.49 5.47 -17.82 -0.10 2.39 16 17 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 18 Si 0.87 23.02 26.62 -169.99 -4.52 18.49 16 19 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.26 -6.79 6.29 56.52 0.36 -6.43 16 21 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16 22 C -0.04 -0.82 4.52 -104.62 -0.47 -1.29 16 23 C -0.10 -1.99 8.86 -39.58 -0.35 -2.34 16 24 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 25 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 26 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 27 C -0.14 -2.79 9.08 -39.58 -0.36 -3.15 16 28 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.55 6.43 -51.92 -0.33 0.21 16 33 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.48 6.86 -51.93 -0.36 0.13 16 36 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 39 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 40 H 0.06 0.52 6.86 -51.93 -0.36 0.16 16 41 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.39 4.53 6.16 -40.82 -0.25 4.28 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.08 1.45 7.69 -51.93 -0.40 1.05 16 46 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 47 H 0.12 2.31 7.72 -52.49 -0.40 1.90 16 48 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 49 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 50 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 51 H 0.11 2.11 7.91 -52.49 -0.42 1.70 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -33.65 388.02 -8.75 -42.40 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.52 Total: 5.72 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -2.11 Total: -21.29 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.47 Total: -38.77 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.52 Total: 18.49 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.65 -8.75 -42.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356982389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.694 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds