Wall clock time and date at job start Tue Mar 31 2020 11:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38287 * 119.94773 * 2 1 4 4 C 1.38123 * 120.05701 * 179.74858 * 3 2 1 5 5 C 1.38755 * 119.94021 * 0.50335 * 4 3 2 6 6 O 1.35901 * 120.04950 * 179.74524 * 5 4 3 7 7 C 1.42902 * 117.00480 * 359.73012 * 6 5 4 8 8 C 1.52997 * 109.47373 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47238 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47440 * 181.72673 * 9 8 7 11 11 C 1.46903 * 110.99649 * 76.24499 * 10 9 8 12 12 C 1.50701 * 109.46764 * 190.00159 * 11 10 9 13 13 H 1.08002 * 120.00423 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99996 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99570 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00203 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46916 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46992 * 120.00048 * 16 14 12 19 19 H 1.48491 * 109.47397 * 239.99939 * 16 14 12 20 20 C 1.46894 * 111.00220 * 200.20172 * 10 9 8 21 21 C 1.53004 * 109.47191 * 76.57490 * 20 10 9 22 22 C 1.52993 * 117.49826 * 244.79734 * 21 20 10 23 23 C 1.52999 * 117.49985 * 176.17198 * 21 20 10 24 24 C 1.38705 * 119.89268 * 359.47480 * 5 4 3 25 25 C 1.38169 * 119.94089 * 0.27512 * 24 5 4 26 26 C 1.50701 * 119.96766 * 180.02562 * 25 24 5 27 27 H 1.08999 * 109.46855 * 270.02363 * 1 2 3 28 28 H 1.08995 * 109.46965 * 30.02387 * 1 2 3 29 29 H 1.09002 * 109.46765 * 150.02024 * 1 2 3 30 30 H 1.08003 * 119.96702 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.02738 * 180.27711 * 4 3 2 32 32 H 1.09005 * 109.47045 * 59.99754 * 7 6 5 33 33 H 1.08998 * 109.46935 * 299.99818 * 7 6 5 34 34 H 1.08996 * 109.47116 * 59.99829 * 8 7 6 35 35 H 1.09006 * 109.47265 * 300.00187 * 8 7 6 36 36 H 1.09005 * 109.46767 * 61.72924 * 9 8 7 37 37 H 1.08997 * 109.47152 * 301.72866 * 9 8 7 38 38 H 1.08994 * 109.47213 * 309.99888 * 11 10 9 39 39 H 1.09003 * 109.47097 * 70.00652 * 11 10 9 40 40 H 0.96998 * 119.99338 * 180.02562 * 15 14 12 41 41 H 1.08997 * 109.47251 * 196.57247 * 20 10 9 42 42 H 1.08992 * 109.47375 * 316.57362 * 20 10 9 43 43 H 1.08997 * 115.54861 * 30.50609 * 21 20 10 44 44 H 1.09007 * 117.49933 * 359.97438 * 22 21 20 45 45 H 1.08997 * 117.50077 * 145.02200 * 22 21 20 46 46 H 1.08998 * 117.49900 * 214.97959 * 23 21 20 47 47 H 1.09007 * 117.49774 * 0.02562 * 23 21 20 48 48 H 1.07993 * 120.03042 * 180.29983 * 24 5 4 49 49 H 1.08999 * 109.47290 * 90.00243 * 26 25 24 50 50 H 1.09002 * 109.46831 * 209.99875 * 26 25 24 51 51 H 1.08998 * 109.47405 * 329.99995 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1982 0.0000 4 6 3.5786 1.2009 0.0052 5 6 4.2734 -0.0001 0.0000 6 8 5.6324 -0.0001 -0.0001 7 6 6.2813 1.2731 -0.0006 8 6 7.7981 1.0726 0.0000 9 6 8.4927 2.4358 -0.0011 10 7 9.9485 2.2436 -0.0423 11 6 10.3919 1.8684 -1.3916 12 6 11.8369 1.4428 -1.3451 13 1 12.3721 1.4499 -0.4071 14 6 12.4757 1.0443 -2.5003 15 7 11.8241 1.0361 -3.6426 16 14 14.2669 0.5175 -2.4429 17 1 14.7675 0.6166 -1.0483 18 1 14.3852 -0.8864 -2.9123 19 1 15.0717 1.4028 -3.3223 20 6 10.6516 3.4445 0.4280 21 6 10.5731 3.5165 1.9544 22 6 9.7982 4.6845 2.5676 23 6 11.3258 4.6540 2.6476 24 6 3.5787 -1.2007 0.0004 25 6 2.1970 -1.1979 0.0004 26 6 1.4417 -2.5019 0.0015 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6560 2.1328 -0.0004 31 1 4.1172 2.1369 0.0098 32 1 5.9884 1.8305 0.8892 33 1 5.9884 1.8298 -0.8908 34 1 8.0912 0.5151 -0.8895 35 1 8.0907 0.5160 0.8904 36 1 8.2237 2.9814 0.9034 37 1 8.1764 3.0040 -0.8758 38 1 9.7817 1.0430 -1.7582 39 1 10.2863 2.7232 -2.0596 40 1 12.2734 0.7554 -4.4551 41 1 11.6960 3.3982 0.1197 42 1 10.1848 4.3306 -0.0019 43 1 10.5274 2.5565 2.4685 44 1 9.3446 5.4019 1.8837 45 1 9.2423 4.4931 3.4854 46 1 11.7749 4.4424 3.6180 47 1 11.8766 5.3513 2.0162 48 1 4.1173 -2.1367 0.0012 49 1 1.2595 -2.8155 1.0294 50 1 0.4894 -2.3706 -0.5124 51 1 2.0296 -3.2629 -0.5116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357928386.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:45 Heat of formation + Delta-G solvation = -3.891693 kcal Electronic energy + Delta-G solvation = -25734.740159 eV Core-core repulsion = 22213.484777 eV Total energy + Delta-G solvation = -3521.255382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26890 -38.24373 -37.77778 -35.75606 -33.13721 -32.70140 -32.23969 -31.30675 -27.90618 -27.41919 -26.41656 -25.91660 -23.92098 -22.51611 -22.14704 -21.69798 -20.53026 -20.24574 -19.64367 -17.71328 -16.59938 -16.29754 -16.03696 -15.45432 -15.32291 -14.91781 -14.46727 -14.39613 -14.14697 -13.98927 -13.75108 -13.49538 -13.39793 -13.15261 -13.00554 -12.55726 -12.41172 -12.16449 -11.89398 -11.76360 -11.65986 -11.47862 -11.31787 -11.30191 -11.14128 -10.93676 -10.83456 -10.71294 -10.63618 -10.51959 -10.21411 -10.09807 -9.59319 -9.48290 -9.13882 -8.89193 -8.43507 -8.05934 -7.28199 -6.02801 -4.03728 1.21905 1.35211 3.22423 3.31218 3.38933 3.43814 3.62264 4.12188 4.42725 4.62593 4.65619 4.75303 4.87364 4.98356 5.02099 5.12151 5.13825 5.20584 5.25941 5.27539 5.29510 5.33327 5.40954 5.45233 5.53706 5.60151 5.62778 5.63750 5.68588 5.78837 5.83449 5.89156 5.91515 5.98431 6.07644 6.11236 6.24100 6.30941 6.32167 6.33628 6.46088 6.52349 6.53376 6.66174 6.76620 6.81526 7.28131 7.33709 7.49298 7.81626 8.09846 8.20251 8.54154 9.04640 9.60538 11.08110 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.002508 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.816181 B =11162.655386 C =12908.783714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.135 4.135 3 C -0.077 4.077 4 C -0.212 4.212 5 C 0.137 3.863 6 O -0.311 6.311 7 C 0.064 3.936 8 C -0.112 4.112 9 C 0.063 3.937 10 N -0.533 5.533 11 C 0.191 3.809 12 C -0.507 4.507 13 H 0.065 0.935 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.092 3.908 21 C -0.131 4.131 22 C -0.192 4.192 23 C -0.184 4.184 24 C -0.154 4.154 25 C -0.050 4.050 26 C -0.117 4.117 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.034 0.966 39 H -0.010 1.010 40 H 0.260 0.740 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.130 0.870 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.764 1.065 9.629 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.135 4.135 3 C -0.095 4.095 4 C -0.231 4.231 5 C 0.091 3.909 6 O -0.225 6.225 7 C -0.012 4.012 8 C -0.150 4.150 9 C -0.066 4.066 10 N -0.257 5.257 11 C 0.066 3.934 12 C -0.545 4.545 13 H 0.083 0.917 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.212 1.212 20 C -0.037 4.037 21 C -0.150 4.150 22 C -0.229 4.229 23 C -0.222 4.222 24 C -0.172 4.172 25 C -0.050 4.050 26 C -0.173 4.173 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.007 0.993 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.039 0.961 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.148 0.852 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.468 0.478 9.739 21.774 hybrid contribution 0.792 0.725 -0.671 1.266 sum -18.676 1.203 9.068 20.796 Atomic orbital electron populations 1.20757 0.91385 1.02519 1.01941 1.19612 0.95945 0.92540 1.05393 1.20779 0.93295 0.97467 0.97944 1.21274 0.95301 0.97314 1.09220 1.19043 0.82863 0.93953 0.95020 1.86106 1.15724 1.32712 1.87916 1.22876 0.94144 0.83307 1.00852 1.21496 0.89493 0.99246 1.04734 1.21845 0.90472 0.94708 0.99597 1.61941 1.01656 1.32866 1.29275 1.19792 0.96331 0.95202 0.82073 1.21211 0.95636 1.43547 0.94134 0.91708 1.24993 0.98357 0.95875 0.95414 1.69970 1.36641 1.48344 0.98815 0.86467 0.84830 0.78215 0.78088 1.19622 1.21019 1.21168 1.21575 1.00775 0.90681 0.90636 1.22464 1.02599 0.93518 0.96396 1.23014 0.94253 1.02850 1.02806 1.22895 0.94153 1.03036 1.02095 1.20298 0.93029 0.96550 1.07357 1.19507 0.92547 0.95042 0.97883 1.20869 1.00045 0.93957 1.02472 0.91632 0.91959 0.91416 0.86018 0.85432 0.92346 0.92250 0.90161 0.90418 0.91880 0.95650 0.94805 0.99266 0.92997 0.89033 0.96117 0.87336 0.89454 0.89557 0.89299 0.89105 0.85214 0.90977 0.91020 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.60 36.01 0.35 -0.45 16 2 C -0.13 -1.38 5.88 -104.60 -0.62 -1.99 16 3 C -0.08 -0.82 9.69 -39.61 -0.38 -1.20 16 4 C -0.21 -2.59 9.04 -39.43 -0.36 -2.95 16 5 C 0.14 1.91 6.69 -39.22 -0.26 1.64 16 6 O -0.31 -4.82 10.14 -19.43 -0.20 -5.02 16 7 C 0.06 0.89 4.74 37.16 0.18 1.07 16 8 C -0.11 -1.85 5.72 -26.74 -0.15 -2.01 16 9 C 0.06 1.08 4.81 -3.83 -0.02 1.07 16 10 N -0.53 -11.13 4.35 -236.08 -1.03 -12.16 16 11 C 0.19 4.88 4.54 -4.97 -0.02 4.85 16 12 C -0.51 -14.05 8.22 -34.44 -0.28 -14.33 16 13 H 0.06 1.79 7.32 -52.49 -0.38 1.40 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 16 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.09 1.74 5.06 -3.83 -0.02 1.72 16 21 C -0.13 -2.06 5.22 -90.62 -0.47 -2.53 16 22 C -0.19 -2.50 10.04 -26.73 -0.27 -2.77 16 23 C -0.18 -2.47 10.25 -26.73 -0.27 -2.74 16 24 C -0.15 -1.94 9.64 -39.43 -0.38 -2.32 16 25 C -0.05 -0.53 5.88 -104.64 -0.62 -1.15 16 26 C -0.12 -0.90 9.60 36.01 0.35 -0.56 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.07 0.42 5.94 -51.93 -0.31 0.11 16 30 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.13 1.40 6.30 -52.49 -0.33 1.07 16 32 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 33 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 34 H 0.08 1.54 6.77 -51.93 -0.35 1.19 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 0.97 7.21 -51.93 -0.37 0.59 16 37 H 0.03 0.45 7.99 -51.93 -0.42 0.03 16 38 H 0.03 0.93 6.64 -51.93 -0.34 0.58 16 39 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.09 1.95 6.58 -51.93 -0.34 1.60 16 42 H 0.02 0.38 7.72 -51.93 -0.40 -0.02 16 43 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 44 H 0.09 1.11 8.04 -51.93 -0.42 0.69 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 48 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.46 5.94 -51.93 -0.31 0.15 16 51 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 406.19 15.07 6.12 6.12 Total: -1.00 -30.23 406.19 -11.72 -41.94 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.97 Total: 1.58 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -3.35 Total: -23.20 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.29 Total: -38.04 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.23 -11.72 -41.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357928386.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.052 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds