Wall clock time and date at job start Tue Mar 31 2020 11:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38146 * 120.02430 * 2 1 4 4 C 1.38266 * 120.05244 * 179.70314 * 3 2 1 5 5 C 1.38270 * 120.11353 * 0.30352 * 4 3 2 6 6 C 1.38138 * 120.05601 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.02906 * 180.02562 * 6 5 4 8 8 C 1.38735 * 120.02985 * 180.25737 * 2 1 3 9 9 O 1.35895 * 120.05645 * 0.02562 * 8 2 1 10 10 C 1.42900 * 117.00062 * 270.27403 * 9 8 2 11 11 C 1.52992 * 109.47318 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47475 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47306 * 174.85889 * 12 11 10 14 14 C 1.46902 * 110.99741 * 75.75350 * 13 12 11 15 15 C 1.50700 * 109.47137 * 189.99717 * 14 13 12 16 16 H 1.07993 * 120.00205 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99904 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00038 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99795 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47012 * 90.00729 * 19 17 15 21 21 H 1.48504 * 109.47224 * 210.00413 * 19 17 15 22 22 H 1.48497 * 109.47375 * 330.00882 * 19 17 15 23 23 C 1.46901 * 111.00292 * 199.70352 * 13 12 11 24 24 C 1.52999 * 109.46935 * 75.55016 * 23 13 12 25 25 C 1.53008 * 117.50081 * 243.46695 * 24 23 13 26 26 C 1.52997 * 59.99804 * 252.51194 * 25 24 23 27 27 H 1.09006 * 109.47409 * 90.00038 * 1 2 3 28 28 H 1.09008 * 109.47007 * 209.99162 * 1 2 3 29 29 H 1.08994 * 109.47714 * 329.99612 * 1 2 3 30 30 H 1.07997 * 119.97573 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.94521 * 180.28317 * 4 3 2 32 32 H 1.08001 * 119.97221 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47747 * 90.00194 * 7 6 5 34 34 H 1.09002 * 109.47358 * 209.99996 * 7 6 5 35 35 H 1.08999 * 109.46862 * 329.99794 * 7 6 5 36 36 H 1.09001 * 109.46849 * 299.99961 * 10 9 8 37 37 H 1.08997 * 109.47013 * 59.99767 * 10 9 8 38 38 H 1.09001 * 109.47460 * 300.00411 * 11 10 9 39 39 H 1.09010 * 109.47469 * 59.99710 * 11 10 9 40 40 H 1.09000 * 109.47160 * 294.86593 * 12 11 10 41 41 H 1.09000 * 109.46742 * 54.85952 * 12 11 10 42 42 H 1.08996 * 109.46952 * 309.99788 * 14 13 12 43 43 H 1.09004 * 109.47169 * 69.99978 * 14 13 12 44 44 H 0.97008 * 119.99623 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.47295 * 195.55627 * 23 13 12 46 46 H 1.09008 * 109.46969 * 315.55353 * 23 13 12 47 47 H 1.08995 * 115.54802 * 29.17296 * 24 23 13 48 48 H 1.09003 * 117.49322 * 0.02562 * 25 24 23 49 49 H 1.08992 * 117.49701 * 145.01886 * 25 24 23 50 50 H 1.09008 * 117.49693 * 252.50830 * 26 25 24 51 51 H 1.09001 * 117.50001 * 107.48960 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5809 1.1968 0.0062 5 6 4.2752 0.0010 0.0061 6 6 3.5887 -1.1976 0.0003 7 6 4.3460 -2.5005 0.0007 8 6 2.2013 -1.2011 -0.0054 9 8 1.5236 -2.3790 -0.0112 10 6 1.1943 -2.9443 1.2592 11 6 0.4394 -4.2588 1.0523 12 6 0.0873 -4.8644 2.4126 13 7 -0.7427 -6.0604 2.2161 14 6 0.0701 -7.1961 1.7603 15 6 -0.8354 -8.3236 1.3362 16 1 -1.9073 -8.2081 1.3986 17 6 -0.2952 -9.5025 0.8675 18 7 1.0101 -9.6431 0.7910 19 14 -1.4176 -10.9004 0.3425 20 1 -1.7376 -10.7627 -1.1011 21 1 -0.7346 -12.1981 0.5765 22 1 -2.6727 -10.8516 1.1346 23 6 -1.4783 -6.3980 3.4420 24 6 -2.6476 -5.4273 3.6188 25 6 -2.6297 -4.5159 4.8476 26 6 -3.6121 -5.6867 4.7778 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3634 0.8899 0.5138 30 1 1.6582 2.1314 -0.0004 31 1 4.1195 2.1329 0.0108 32 1 5.3552 0.0042 0.0113 33 1 4.5240 -2.8170 1.0284 34 1 3.7615 -3.2607 -0.5174 35 1 5.3003 -2.3661 -0.5085 36 1 2.1093 -3.1356 1.8199 37 1 0.5665 -2.2479 1.8150 38 1 -0.4756 -4.0680 0.4914 39 1 1.0676 -4.9551 0.4966 40 1 1.0031 -5.1395 2.9358 41 1 -0.4634 -4.1332 3.0042 42 1 0.6852 -6.8867 0.9154 43 1 0.7128 -7.5326 2.5738 44 1 1.3901 -10.4726 0.4616 45 1 -1.8594 -7.4165 3.3683 46 1 -0.8097 -6.3215 4.2996 47 1 -3.0655 -5.0221 2.6973 48 1 -1.7846 -4.6076 5.5299 49 1 -3.0358 -3.5108 4.7346 50 1 -4.6646 -5.4518 4.6189 51 1 -3.4136 -6.5490 5.4144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357931406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:48 Heat of formation + Delta-G solvation = -18.273034 kcal Electronic energy + Delta-G solvation = -26426.509683 eV Core-core repulsion = 22904.630679 eV Total energy + Delta-G solvation = -3521.879004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18956 -39.44421 -38.36590 -37.08784 -34.84894 -34.52413 -33.34990 -31.81870 -29.41334 -28.42831 -27.55032 -27.32978 -25.50136 -23.51520 -23.08195 -22.65694 -21.82778 -21.76563 -21.08293 -18.74203 -18.49891 -17.60893 -16.94261 -16.82876 -16.34595 -16.05275 -15.99542 -15.47697 -15.41806 -15.02529 -14.91244 -14.49120 -14.24620 -14.11441 -13.92295 -13.87110 -13.59903 -13.56752 -13.37859 -12.87388 -12.84775 -12.71825 -12.69243 -12.49307 -12.43624 -12.31471 -12.28562 -12.13446 -11.97203 -11.85227 -11.65144 -11.29618 -11.03374 -10.76857 -10.69186 -10.56239 -9.53799 -9.45160 -9.02764 -8.20191 -6.29453 0.23562 0.37338 1.40062 1.41742 1.52528 2.37458 2.42015 2.87802 2.99528 3.12309 3.33489 3.81636 3.87494 3.93459 3.98603 4.09781 4.13378 4.15984 4.23569 4.29334 4.33572 4.38460 4.43619 4.48378 4.56470 4.61038 4.64175 4.68348 4.71603 4.78187 4.82094 4.86591 4.87281 4.91945 4.93112 5.06629 5.10542 5.15511 5.24383 5.29428 5.30555 5.33022 5.33249 5.46055 5.52232 5.52664 5.63527 5.66515 5.89928 6.07584 6.37420 6.60978 6.67319 6.87083 7.39866 8.90970 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.003022 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.247315 B = 9264.262661 C =10981.833692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.114 4.114 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.113 4.113 8 C 0.065 3.935 9 O -0.348 6.348 10 C 0.084 3.916 11 C -0.099 4.099 12 C 0.068 3.932 13 N -0.539 5.539 14 C 0.209 3.791 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.096 3.904 24 C -0.153 4.153 25 C -0.170 4.170 26 C -0.174 4.174 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.017 0.983 41 H 0.090 0.910 42 H 0.007 0.993 43 H -0.042 1.042 44 H 0.264 0.736 45 H 0.060 0.940 46 H 0.022 0.978 47 H 0.102 0.898 48 H 0.091 0.909 49 H 0.108 0.892 50 H 0.107 0.893 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 22.889 3.567 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.114 4.114 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.138 4.138 6 C -0.118 4.118 7 C -0.170 4.170 8 C 0.022 3.978 9 O -0.266 6.266 10 C 0.010 3.990 11 C -0.137 4.137 12 C -0.061 4.061 13 N -0.262 5.262 14 C 0.083 3.917 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.032 4.032 24 C -0.172 4.172 25 C -0.207 4.207 26 C -0.212 4.212 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.109 0.891 42 H 0.025 0.975 43 H -0.024 1.024 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.040 0.960 47 H 0.120 0.880 48 H 0.109 0.891 49 H 0.127 0.873 50 H 0.126 0.874 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.903 22.747 3.012 22.963 hybrid contribution 0.601 -1.505 0.236 1.638 sum 1.504 21.242 3.248 21.541 Atomic orbital electron populations 1.20731 0.89938 1.03185 1.02831 1.20505 0.97615 0.92603 1.00684 1.21266 0.94723 0.97309 1.00314 1.21523 0.94265 0.98868 0.98883 1.21236 1.00971 0.91075 1.00535 1.20479 0.93021 0.97231 1.01075 1.20702 1.00019 0.93755 1.02477 1.18749 0.90161 0.85330 1.03589 1.85989 1.74883 1.35593 1.30147 1.22552 0.98493 0.94112 0.83886 1.21307 1.00123 0.94375 0.97942 1.21879 0.95349 0.93125 0.95719 1.61925 1.28410 1.04823 1.31082 1.19384 0.91592 0.87940 0.92798 1.21461 0.93652 0.98543 1.42242 0.91953 1.25893 0.96518 1.01404 0.95821 1.70090 1.12087 1.27412 1.47897 0.85427 0.78829 0.77874 0.78769 1.19999 1.20753 1.18764 1.21505 0.93688 0.98501 0.89501 1.22192 0.99198 1.01950 0.93832 1.23097 1.01924 0.95887 0.99811 1.23001 0.96804 1.00266 1.01080 0.90970 0.92391 0.89445 0.83199 0.82806 0.83652 0.91161 0.92953 0.89667 0.93254 0.91411 0.91065 0.93913 0.96432 0.89124 0.97517 1.02423 0.92762 0.92121 0.96029 0.88009 0.89069 0.87331 0.87430 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 9.79 71.24 0.70 -1.47 16 2 C -0.11 -2.58 5.89 -19.77 -0.12 -2.70 16 3 C -0.12 -2.06 9.70 22.25 0.22 -1.85 16 4 C -0.12 -1.87 10.04 22.28 0.22 -1.65 16 5 C -0.12 -2.26 9.70 22.25 0.22 -2.04 16 6 C -0.12 -2.89 5.89 -19.77 -0.12 -3.00 16 7 C -0.11 -2.69 9.79 71.23 0.70 -1.99 16 8 C 0.06 1.78 5.67 22.51 0.13 1.91 16 9 O -0.35 -10.98 8.33 -92.37 -0.77 -11.75 16 10 C 0.08 2.45 5.69 71.98 0.41 2.86 16 11 C -0.10 -3.50 5.62 30.59 0.17 -3.32 16 12 C 0.07 2.43 4.81 86.30 0.42 2.84 16 13 N -0.54 -23.48 4.36 -900.79 -3.93 -27.40 16 14 C 0.21 11.37 4.55 85.56 0.39 11.75 16 15 C -0.52 -30.02 8.23 25.60 0.21 -29.81 16 16 H 0.06 3.54 7.31 -2.91 -0.02 3.52 16 17 C 0.00 0.09 5.46 84.66 0.46 0.55 16 18 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 19 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 23 C 0.10 3.74 5.07 86.30 0.44 4.18 16 24 C -0.15 -4.65 5.15 -10.79 -0.06 -4.70 16 25 C -0.17 -3.96 10.09 30.60 0.31 -3.65 16 26 C -0.17 -4.28 10.25 30.59 0.31 -3.96 16 27 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.06 1.28 6.30 -2.38 -0.02 1.27 16 29 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 30 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.49 7.53 -2.39 -0.02 1.47 16 35 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.71 7.23 -2.39 -0.02 1.69 16 38 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.04 1.77 6.96 -2.38 -0.02 1.75 16 40 H 0.02 0.66 8.00 -2.39 -0.02 0.64 16 41 H 0.09 2.74 7.22 -2.39 -0.02 2.73 16 42 H 0.01 0.40 6.72 -2.39 -0.02 0.38 16 43 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 44 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 45 H 0.06 2.69 6.58 -2.39 -0.02 2.68 16 46 H 0.02 0.82 7.74 -2.38 -0.02 0.80 16 47 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 48 H 0.09 2.08 8.03 -2.39 -0.02 2.06 16 49 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 51 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -67.95 409.73 3.50 -64.46 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.87 Total: 20.58 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 5.01 Total: -36.07 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -3.64 Total: -84.34 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.77 Total: -11.75 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.95 3.50 -64.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357931406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.184 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds