Wall clock time and date at job start Tue Mar 31 2020 11:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00320 * 2 1 4 4 C 1.38213 * 120.00073 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99583 * 0.02562 * 4 3 2 6 6 C 1.38203 * 120.00576 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99492 * 179.72304 * 2 1 3 8 8 C 1.50703 * 120.00336 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.47454 * 56.43761 * 8 7 2 10 10 C 1.52997 * 109.47248 * 176.43928 * 8 7 2 11 11 C 1.50695 * 109.46771 * 296.43706 * 8 7 2 12 12 O 1.21288 * 120.00395 * 353.11909 * 11 8 7 13 13 N 1.34776 * 120.00006 * 173.12390 * 11 8 7 14 14 C 1.46504 * 119.99938 * 180.02562 * 13 11 8 15 15 C 1.53006 * 109.46778 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47011 * 299.99443 * 15 14 13 17 17 C 1.52997 * 109.47362 * 60.00016 * 15 14 13 18 18 C 1.53007 * 109.46955 * 179.97438 * 15 14 13 19 19 C 1.50698 * 109.47057 * 179.97438 * 18 15 14 20 20 H 1.07995 * 120.00149 * 359.97438 * 19 18 15 21 21 C 1.37872 * 119.99668 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99953 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00237 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47407 * 90.00128 * 23 21 19 25 25 H 1.48510 * 109.46875 * 210.00043 * 23 21 19 26 26 H 1.48494 * 109.46991 * 329.99316 * 23 21 19 27 27 H 1.08994 * 109.47844 * 94.80856 * 1 2 3 28 28 H 1.09003 * 109.46818 * 334.80685 * 1 2 3 29 29 H 1.09003 * 109.47175 * 214.81365 * 1 2 3 30 30 H 1.07998 * 119.99737 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.99676 * 179.97438 * 4 3 2 32 32 H 1.08004 * 119.99528 * 179.97438 * 5 4 3 33 33 H 1.08007 * 120.00282 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47207 * 51.04954 * 9 8 7 35 35 H 1.08997 * 109.47625 * 171.05532 * 9 8 7 36 36 H 1.09008 * 109.47187 * 291.05948 * 9 8 7 37 37 H 1.09000 * 109.47288 * 59.99263 * 10 8 7 38 38 H 1.08994 * 109.47729 * 179.97438 * 10 8 7 39 39 H 1.09001 * 109.47303 * 299.99822 * 10 8 7 40 40 H 0.96993 * 120.00133 * 359.97438 * 13 11 8 41 41 H 1.09000 * 109.46974 * 299.99594 * 14 13 11 42 42 H 1.08993 * 109.47326 * 59.99559 * 14 13 11 43 43 H 1.09001 * 109.46748 * 60.00525 * 16 15 14 44 44 H 1.08997 * 109.46679 * 180.02562 * 16 15 14 45 45 H 1.09003 * 109.47232 * 300.00440 * 16 15 14 46 46 H 1.09000 * 109.47421 * 59.99775 * 17 15 14 47 47 H 1.09003 * 109.46870 * 180.02562 * 17 15 14 48 48 H 1.08997 * 109.46663 * 299.99854 * 17 15 14 49 49 H 1.09000 * 109.46960 * 299.99693 * 18 15 14 50 50 H 1.09003 * 109.47171 * 59.99632 * 18 15 14 51 51 H 0.97000 * 120.00503 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2716 -0.0002 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0058 8 6 1.4444 -2.5021 0.0115 9 6 0.4992 -2.5506 -1.1906 10 6 2.4362 -3.6640 -0.0723 11 6 0.6450 -2.6149 1.2839 12 8 0.7783 -1.7861 2.1594 13 7 -0.2181 -3.6367 1.4492 14 6 -0.9957 -3.7461 2.6860 15 6 -1.8905 -4.9853 2.6179 16 6 -2.8424 -4.8621 1.4264 17 6 -1.0216 -6.2333 2.4498 18 6 -2.7022 -5.0998 3.9099 19 6 -3.5840 -6.3200 3.8426 20 1 -3.5676 -6.9505 2.9659 21 6 -4.4118 -6.6314 4.9003 22 7 -5.1810 -7.6966 4.8418 23 14 -4.4408 -5.5405 6.4164 24 1 -5.4691 -4.4829 6.2457 25 1 -4.7679 -6.3610 7.6103 26 1 -3.1084 -4.9108 6.5986 27 1 -0.3634 -0.0861 -1.0239 28 1 -0.3633 0.9299 0.4375 29 1 -0.3634 -0.8437 0.5867 30 1 1.6584 2.1326 -0.0004 31 1 4.1204 2.1325 0.0001 32 1 5.3517 -0.0002 0.0005 33 1 4.1206 -2.1325 0.0001 34 1 1.0532 -2.3110 -2.0982 35 1 0.0734 -3.5502 -1.2780 36 1 -0.3024 -1.8250 -1.0521 37 1 3.1096 -3.6295 0.7841 38 1 1.8913 -4.6080 -0.0677 39 1 3.0145 -3.5825 -0.9927 40 1 -0.3250 -4.2994 0.7490 41 1 -0.3176 -3.8342 3.5349 42 1 -1.6143 -2.8568 2.8061 43 1 -2.2638 -4.7808 0.5062 44 1 -3.4801 -5.7448 1.3782 45 1 -3.4614 -3.9730 1.5462 46 1 -0.3435 -6.3210 3.2987 47 1 -1.6592 -7.1160 2.4009 48 1 -0.4431 -6.1518 1.5297 49 1 -2.0238 -5.1877 4.7586 50 1 -3.3212 -4.2107 4.0302 51 1 -5.7637 -7.9155 5.5857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359754707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:47 Heat of formation + Delta-G solvation = -30.909663 kcal Electronic energy + Delta-G solvation = -27671.856826 eV Core-core repulsion = 24149.429857 eV Total energy + Delta-G solvation = -3522.426969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.00861 -38.95040 -37.23791 -35.37575 -33.63714 -32.91244 -32.07309 -29.94301 -27.97623 -27.83075 -26.68597 -26.57735 -26.34621 -24.07692 -22.65626 -21.55464 -21.22150 -19.58586 -18.22340 -17.14654 -16.73057 -16.49097 -15.78085 -15.65459 -14.93906 -14.79336 -14.32223 -14.28764 -13.99622 -13.90681 -13.61484 -13.48052 -13.13833 -12.77193 -12.74374 -12.50490 -12.36558 -12.29767 -12.24099 -12.18156 -11.97321 -11.89818 -11.38612 -11.25067 -11.13690 -11.02146 -10.96843 -10.66974 -10.63167 -10.49554 -9.98656 -9.81858 -9.73281 -9.39815 -9.01105 -8.87455 -8.78913 -8.62217 -8.54673 -6.05492 -4.02795 1.26059 1.32845 2.75639 3.30532 3.31637 3.38844 3.42947 3.75301 4.29094 4.44637 4.55115 4.71671 4.84924 4.86063 4.90143 4.96633 5.20953 5.27149 5.29811 5.36298 5.40765 5.46497 5.48568 5.51584 5.55206 5.59097 5.63361 5.64441 5.78263 5.82920 5.90774 5.97838 6.08825 6.10110 6.14962 6.18171 6.29562 6.38794 6.41640 6.47719 6.57427 6.59468 6.68993 6.88835 6.92987 6.99572 7.03285 7.18764 7.35233 7.66744 7.78579 8.37237 8.51633 8.98496 9.57327 11.07222 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.002906 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.671431 B = 9634.101268 C = 9992.716402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.055 4.055 3 C -0.123 4.123 4 C -0.120 4.120 5 C -0.130 4.130 6 C -0.113 4.113 7 C -0.057 4.057 8 C -0.042 4.042 9 C -0.155 4.155 10 C -0.143 4.143 11 C 0.519 3.481 12 O -0.534 6.534 13 N -0.719 5.719 14 C 0.126 3.874 15 C -0.062 4.062 16 C -0.129 4.129 17 C -0.128 4.128 18 C -0.002 4.002 19 C -0.511 4.511 20 H 0.078 0.922 21 C 0.067 3.933 22 N -0.904 5.904 23 Si 0.874 3.126 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.265 1.265 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.399 0.601 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.030 0.970 49 H 0.018 0.982 50 H 0.013 0.987 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.385 12.982 -14.628 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.055 4.055 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.148 4.148 6 C -0.131 4.131 7 C -0.057 4.057 8 C -0.045 4.045 9 C -0.212 4.212 10 C -0.200 4.200 11 C 0.304 3.696 12 O -0.411 6.411 13 N -0.371 5.371 14 C 0.003 3.997 15 C -0.063 4.063 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.040 4.040 19 C -0.548 4.548 20 H 0.096 0.904 21 C -0.134 4.134 22 N -0.543 5.543 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.190 1.190 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.234 0.766 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.049 0.951 49 H 0.036 0.964 50 H 0.032 0.968 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.328 13.464 -13.871 25.304 hybrid contribution -0.138 0.223 0.704 0.751 sum 16.190 13.687 -13.167 24.956 Atomic orbital electron populations 1.21156 0.91618 1.03673 1.01682 1.19631 0.95919 0.92428 0.97518 1.20987 0.94262 0.97312 1.01505 1.21085 0.94289 0.97933 1.00467 1.21042 0.99591 0.92510 1.01625 1.21102 0.93434 0.98367 1.00149 1.19166 0.93192 0.92736 1.00604 1.19704 0.95812 0.94525 0.94500 1.22206 0.99413 1.03246 0.96328 1.21939 0.98817 0.96356 1.02894 1.20256 0.79824 0.81289 0.88201 1.90728 1.66004 1.40788 1.43540 1.46179 1.42145 1.27888 1.20892 1.21638 0.93624 0.99086 0.85381 1.20684 0.94616 0.92367 0.98614 1.21775 0.98799 1.02867 0.95141 1.21770 0.98866 0.98886 0.99036 1.19591 0.95009 0.97683 0.91696 1.21072 1.21321 1.08564 1.03889 0.90390 1.24996 0.95189 0.94944 0.98288 1.69899 1.26046 1.26140 1.32216 0.86865 0.78983 0.80860 0.83102 1.20373 1.21504 1.19003 0.91150 0.91829 0.90400 0.86286 0.86381 0.86315 0.85721 0.91322 0.91619 0.90510 0.91633 0.91522 0.91049 0.76554 0.91898 0.91893 0.95032 0.90870 0.93411 0.93413 0.90866 0.95064 0.96396 0.96846 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 7.79 36.01 0.28 -1.14 16 2 C -0.05 -0.67 5.24 -104.62 -0.55 -1.21 16 3 C -0.12 -1.35 9.68 -39.58 -0.38 -1.73 16 4 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 5 C -0.13 -1.30 10.05 -39.59 -0.40 -1.69 16 6 C -0.11 -1.21 8.98 -39.59 -0.36 -1.57 16 7 C -0.06 -0.67 4.25 -104.62 -0.44 -1.12 16 8 C -0.04 -0.46 0.63 -156.82 -0.10 -0.55 16 9 C -0.15 -1.36 7.73 37.16 0.29 -1.08 16 10 C -0.14 -1.26 7.10 37.16 0.26 -1.00 16 11 C 0.52 7.30 4.59 -10.99 -0.05 7.25 16 12 O -0.53 -9.60 14.49 5.55 0.08 -9.52 16 13 N -0.72 -9.68 4.80 -60.29 -0.29 -9.97 16 14 C 0.13 2.06 4.57 -4.04 -0.02 2.04 16 15 C -0.06 -1.11 0.54 -154.50 -0.08 -1.20 16 16 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 17 C -0.13 -2.16 8.05 37.16 0.30 -1.87 16 18 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 19 C -0.51 -13.52 8.20 -34.44 -0.28 -13.80 16 20 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 21 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 22 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 23 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 27 H 0.07 0.66 6.94 -51.93 -0.36 0.29 16 28 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 29 H 0.08 1.04 4.08 -51.93 -0.21 0.82 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 33 H 0.12 1.11 5.90 -52.48 -0.31 0.80 16 34 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.06 0.50 7.51 -51.93 -0.39 0.11 16 36 H 0.08 0.71 4.46 -51.92 -0.23 0.48 16 37 H 0.06 0.62 7.36 -51.93 -0.38 0.24 16 38 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 39 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 40 H 0.40 4.57 5.31 -40.82 -0.22 4.35 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 44 H 0.07 1.39 6.62 -51.93 -0.34 1.04 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 48 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 49 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 50 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 51 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -31.59 381.67 -8.53 -40.12 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.36 Total: 3.60 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -1.81 Total: -20.46 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.48 Total: -36.27 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.59 -8.53 -40.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359754707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.209 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds