Wall clock time and date at job start Tue Mar 31 2020 11:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00320 * 2 1 4 4 C 1.38213 * 120.00073 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99583 * 0.02562 * 4 3 2 6 6 C 1.38203 * 120.00576 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99492 * 179.72304 * 2 1 3 8 8 C 1.50703 * 120.00336 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.47454 * 56.43761 * 8 7 2 10 10 C 1.52997 * 109.47248 * 176.43928 * 8 7 2 11 11 C 1.50695 * 109.46771 * 296.43706 * 8 7 2 12 12 O 1.21288 * 120.00395 * 353.11909 * 11 8 7 13 13 N 1.34776 * 120.00006 * 173.12390 * 11 8 7 14 14 C 1.46504 * 119.99938 * 180.02562 * 13 11 8 15 15 C 1.53006 * 109.46778 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47011 * 299.99443 * 15 14 13 17 17 C 1.52997 * 109.47362 * 60.00016 * 15 14 13 18 18 C 1.53007 * 109.46955 * 179.97438 * 15 14 13 19 19 C 1.50698 * 109.47057 * 179.97438 * 18 15 14 20 20 H 1.07995 * 120.00149 * 359.97438 * 19 18 15 21 21 C 1.37872 * 119.99668 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99953 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00237 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47407 * 90.00128 * 23 21 19 25 25 H 1.48510 * 109.46875 * 210.00043 * 23 21 19 26 26 H 1.48494 * 109.46991 * 329.99316 * 23 21 19 27 27 H 1.08994 * 109.47844 * 94.80856 * 1 2 3 28 28 H 1.09003 * 109.46818 * 334.80685 * 1 2 3 29 29 H 1.09003 * 109.47175 * 214.81365 * 1 2 3 30 30 H 1.07998 * 119.99737 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.99676 * 179.97438 * 4 3 2 32 32 H 1.08004 * 119.99528 * 179.97438 * 5 4 3 33 33 H 1.08007 * 120.00282 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47207 * 51.04954 * 9 8 7 35 35 H 1.08997 * 109.47625 * 171.05532 * 9 8 7 36 36 H 1.09008 * 109.47187 * 291.05948 * 9 8 7 37 37 H 1.09000 * 109.47288 * 59.99263 * 10 8 7 38 38 H 1.08994 * 109.47729 * 179.97438 * 10 8 7 39 39 H 1.09001 * 109.47303 * 299.99822 * 10 8 7 40 40 H 0.96993 * 120.00133 * 359.97438 * 13 11 8 41 41 H 1.09000 * 109.46974 * 299.99594 * 14 13 11 42 42 H 1.08993 * 109.47326 * 59.99559 * 14 13 11 43 43 H 1.09001 * 109.46748 * 60.00525 * 16 15 14 44 44 H 1.08997 * 109.46679 * 180.02562 * 16 15 14 45 45 H 1.09003 * 109.47232 * 300.00440 * 16 15 14 46 46 H 1.09000 * 109.47421 * 59.99775 * 17 15 14 47 47 H 1.09003 * 109.46870 * 180.02562 * 17 15 14 48 48 H 1.08997 * 109.46663 * 299.99854 * 17 15 14 49 49 H 1.09000 * 109.46960 * 299.99693 * 18 15 14 50 50 H 1.09003 * 109.47171 * 59.99632 * 18 15 14 51 51 H 0.97000 * 120.00503 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2716 -0.0002 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0058 8 6 1.4444 -2.5021 0.0115 9 6 0.4992 -2.5506 -1.1906 10 6 2.4362 -3.6640 -0.0723 11 6 0.6450 -2.6149 1.2839 12 8 0.7783 -1.7861 2.1594 13 7 -0.2181 -3.6367 1.4492 14 6 -0.9957 -3.7461 2.6860 15 6 -1.8905 -4.9853 2.6179 16 6 -2.8424 -4.8621 1.4264 17 6 -1.0216 -6.2333 2.4498 18 6 -2.7022 -5.0998 3.9099 19 6 -3.5840 -6.3200 3.8426 20 1 -3.5676 -6.9505 2.9659 21 6 -4.4118 -6.6314 4.9003 22 7 -5.1810 -7.6966 4.8418 23 14 -4.4408 -5.5405 6.4164 24 1 -5.4691 -4.4829 6.2457 25 1 -4.7679 -6.3610 7.6103 26 1 -3.1084 -4.9108 6.5986 27 1 -0.3634 -0.0861 -1.0239 28 1 -0.3633 0.9299 0.4375 29 1 -0.3634 -0.8437 0.5867 30 1 1.6584 2.1326 -0.0004 31 1 4.1204 2.1325 0.0001 32 1 5.3517 -0.0002 0.0005 33 1 4.1206 -2.1325 0.0001 34 1 1.0532 -2.3110 -2.0982 35 1 0.0734 -3.5502 -1.2780 36 1 -0.3024 -1.8250 -1.0521 37 1 3.1096 -3.6295 0.7841 38 1 1.8913 -4.6080 -0.0677 39 1 3.0145 -3.5825 -0.9927 40 1 -0.3250 -4.2994 0.7490 41 1 -0.3176 -3.8342 3.5349 42 1 -1.6143 -2.8568 2.8061 43 1 -2.2638 -4.7808 0.5062 44 1 -3.4801 -5.7448 1.3782 45 1 -3.4614 -3.9730 1.5462 46 1 -0.3435 -6.3210 3.2987 47 1 -1.6592 -7.1160 2.4009 48 1 -0.4431 -6.1518 1.5297 49 1 -2.0238 -5.1877 4.7586 50 1 -3.3212 -4.2107 4.0302 51 1 -5.7637 -7.9155 5.5857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359754707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:46 Heat of formation + Delta-G solvation = -48.223642 kcal Electronic energy + Delta-G solvation = -27672.607616 eV Core-core repulsion = 24149.429857 eV Total energy + Delta-G solvation = -3523.177760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95063 -39.97736 -38.61168 -36.26311 -35.15957 -33.96692 -33.65485 -30.75977 -29.68901 -28.67348 -27.97762 -27.64919 -27.43943 -25.12045 -24.21092 -22.53183 -22.13778 -20.67015 -19.59159 -18.90641 -18.01675 -17.42849 -16.81116 -16.66084 -16.19377 -15.97646 -15.56804 -15.37883 -15.23486 -15.02419 -15.00038 -14.48627 -14.22519 -14.14299 -14.02736 -13.88144 -13.37693 -13.24146 -13.04001 -12.99311 -12.94442 -12.82960 -12.79468 -12.65852 -12.56504 -12.30237 -12.16578 -12.11294 -11.78579 -11.70769 -11.51601 -11.42394 -11.25225 -10.92179 -10.70893 -10.63079 -10.01126 -9.66729 -9.41817 -8.22859 -6.22623 0.47006 0.54311 1.34558 1.37706 1.47362 1.68613 2.25130 2.38251 2.93009 3.12677 3.49938 3.76554 3.89471 3.97795 4.05727 4.08179 4.10721 4.11838 4.16754 4.27923 4.42973 4.63163 4.64361 4.68949 4.70816 4.75402 4.77251 4.80264 4.85548 4.88279 4.92979 4.95612 4.97244 5.03187 5.10156 5.15708 5.24086 5.26082 5.30219 5.35914 5.38227 5.41016 5.50437 5.57014 5.62270 5.65902 5.70127 5.76751 5.79592 6.17507 6.37841 6.61753 6.84358 7.30136 7.40201 8.92681 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.002906 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.671431 B = 9634.101268 C = 9992.716402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.126 4.126 5 C -0.136 4.136 6 C -0.123 4.123 7 C -0.075 4.075 8 C -0.035 4.035 9 C -0.154 4.154 10 C -0.143 4.143 11 C 0.520 3.480 12 O -0.576 6.576 13 N -0.709 5.709 14 C 0.140 3.860 15 C -0.057 4.057 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.004 4.004 19 C -0.500 4.500 20 H 0.054 0.946 21 C 0.007 3.993 22 N -0.950 5.950 23 Si 0.932 3.068 24 H -0.272 1.272 25 H -0.289 1.289 26 H -0.254 1.254 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.411 0.589 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.042 0.958 47 H 0.046 0.954 48 H 0.069 0.931 49 H 0.012 0.988 50 H 0.012 0.988 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.428 14.131 -16.137 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.077 4.077 3 C -0.156 4.156 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.141 4.141 7 C -0.076 4.076 8 C -0.038 4.038 9 C -0.211 4.211 10 C -0.200 4.200 11 C 0.308 3.692 12 O -0.456 6.456 13 N -0.361 5.361 14 C 0.015 3.985 15 C -0.057 4.057 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.042 4.042 19 C -0.538 4.538 20 H 0.072 0.928 21 C -0.190 4.190 22 N -0.592 5.592 23 Si 0.757 3.243 24 H -0.197 1.197 25 H -0.215 1.215 26 H -0.178 1.178 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.249 0.751 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.031 0.969 50 H 0.030 0.970 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.383 14.609 -15.411 28.087 hybrid contribution -0.725 -0.113 1.115 1.335 sum 17.658 14.495 -14.296 26.950 Atomic orbital electron populations 1.21115 0.91654 1.02595 1.02370 1.19852 0.96243 0.93178 0.98431 1.21249 0.95054 0.97574 1.01723 1.21419 0.94119 0.99120 0.99687 1.21403 1.00925 0.92261 1.00787 1.21399 0.93276 0.99504 0.99891 1.19399 0.93901 0.93052 1.01234 1.19705 0.96005 0.95020 0.93096 1.22234 0.98989 1.04070 0.95838 1.21989 0.98521 0.95873 1.03618 1.20882 0.79300 0.80211 0.88834 1.90709 1.67257 1.42249 1.45355 1.45988 1.41703 1.28327 1.20110 1.21249 0.93166 0.97605 0.86445 1.20541 0.94758 0.93697 0.96719 1.21703 0.98614 1.01365 0.96386 1.21701 0.98437 0.97041 1.00898 1.19570 0.94807 0.95560 0.94229 1.21361 1.20843 1.09042 1.02559 0.92777 1.25804 0.95349 0.96294 1.01515 1.70034 1.27603 1.28260 1.33326 0.85930 0.79538 0.79221 0.79578 1.19727 1.21471 1.17777 0.89355 0.92081 0.92391 0.85227 0.84194 0.84002 0.84101 0.89973 0.89999 0.91197 0.92545 0.90368 0.88905 0.75087 0.93137 0.92876 0.91139 0.93548 0.93708 0.93852 0.93514 0.91171 0.96944 0.97016 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 7.79 71.24 0.55 -2.12 16 2 C -0.08 -1.79 5.24 -19.87 -0.10 -1.90 16 3 C -0.14 -2.89 9.68 22.27 0.22 -2.67 16 4 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 5 C -0.14 -2.41 10.05 22.27 0.22 -2.19 16 6 C -0.12 -2.39 8.98 22.27 0.20 -2.19 16 7 C -0.08 -1.67 4.25 -19.86 -0.08 -1.75 16 8 C -0.04 -0.68 0.63 -53.68 -0.03 -0.71 16 9 C -0.15 -2.26 7.73 71.98 0.56 -1.71 16 10 C -0.14 -2.08 7.10 71.98 0.51 -1.57 16 11 C 0.52 13.86 4.59 87.66 0.40 14.26 16 12 O -0.58 -20.50 14.49 -3.06 -0.04 -20.55 16 13 N -0.71 -17.57 4.80 -463.05 -2.22 -19.79 16 14 C 0.14 4.41 4.57 86.38 0.39 4.81 16 15 C -0.06 -1.97 0.54 -52.18 -0.03 -2.00 16 16 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 17 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 18 C 0.00 -0.17 3.11 29.85 0.09 -0.08 16 19 C -0.50 -26.94 8.20 25.60 0.21 -26.73 16 20 H 0.05 3.12 5.92 -2.91 -0.02 3.11 16 21 C 0.01 0.38 5.47 84.65 0.46 0.84 16 22 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 23 Si 0.93 44.52 27.47 68.60 1.88 46.41 16 24 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.25 -11.53 6.54 99.48 0.65 -10.88 16 27 H 0.09 1.53 6.94 -2.39 -0.02 1.52 16 28 H 0.06 1.31 8.05 -2.39 -0.02 1.29 16 29 H 0.06 1.51 4.08 -2.39 -0.01 1.50 16 30 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.14 2.14 5.90 -2.91 -0.02 2.12 16 34 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 35 H 0.08 0.92 7.51 -2.39 -0.02 0.90 16 36 H 0.07 1.13 4.46 -2.38 -0.01 1.12 16 37 H 0.06 0.93 7.36 -2.39 -0.02 0.92 16 38 H 0.08 0.95 8.07 -2.39 -0.02 0.93 16 39 H 0.09 0.97 7.67 -2.39 -0.02 0.95 16 40 H 0.41 8.01 5.31 -92.71 -0.49 7.52 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 44 H 0.05 1.75 6.62 -2.39 -0.02 1.73 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.05 1.77 6.62 -2.39 -0.02 1.75 16 48 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 49 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 50 H 0.01 0.52 7.57 -2.39 -0.02 0.51 16 51 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -70.31 381.67 5.24 -65.07 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.37 Total: 21.55 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 4.96 Total: -34.57 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -1.92 Total: -77.90 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.04 Total: -20.55 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Total: -70.31 5.24 -65.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359754707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.848 kcal (2) G-P(sol) polarization free energy of solvation -70.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds