Wall clock time and date at job start Tue Mar 31 2020 11:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38404 * 119.83073 * 2 1 4 4 C 1.37883 * 120.17737 * 180.02562 * 3 2 1 5 5 C 1.39850 * 119.82000 * 0.02562 * 4 3 2 6 6 C 1.47176 * 120.17069 * 179.97438 * 5 4 3 7 7 O 1.21257 * 119.99687 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00137 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.46810 * 179.97438 * 8 6 5 10 10 N 1.46907 * 109.46983 * 179.97438 * 9 8 6 11 11 C 1.46897 * 110.99906 * 184.49862 * 10 9 8 12 12 C 1.50698 * 109.46856 * 190.29083 * 11 10 9 13 13 H 1.08004 * 120.00114 * 4.71943 * 12 11 10 14 14 C 1.37876 * 119.99963 * 184.71010 * 12 11 10 15 15 N 1.31515 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00022 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47268 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47073 * 120.00318 * 16 14 12 19 19 H 1.48501 * 109.47306 * 240.00520 * 16 14 12 20 20 C 1.46906 * 110.99627 * 60.54686 * 10 9 8 21 21 C 1.53004 * 109.47086 * 52.26236 * 20 10 9 22 22 C 1.52991 * 109.47087 * 35.67275 * 21 20 10 23 23 C 1.52998 * 109.46815 * 155.67111 * 21 20 10 24 24 C 1.52998 * 109.46911 * 275.67099 * 21 20 10 25 25 C 1.39855 * 119.66089 * 0.25492 * 5 4 3 26 26 C 1.37886 * 119.81910 * 359.46388 * 25 5 4 27 27 H 1.09003 * 109.47470 * 89.99660 * 1 2 3 28 28 H 1.08999 * 109.47349 * 209.99832 * 1 2 3 29 29 H 1.09000 * 109.46582 * 330.00076 * 1 2 3 30 30 H 1.08002 * 119.91010 * 359.97438 * 3 2 1 31 31 H 1.07992 * 120.09050 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.46654 * 299.99814 * 8 6 5 33 33 H 1.09000 * 109.46876 * 59.99734 * 8 6 5 34 34 H 1.08998 * 109.47423 * 299.99420 * 9 8 6 35 35 H 1.09003 * 109.47219 * 59.99823 * 9 8 6 36 36 H 1.08994 * 109.47193 * 310.29220 * 11 10 9 37 37 H 1.08996 * 109.47108 * 70.29761 * 11 10 9 38 38 H 0.96996 * 120.00355 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.46726 * 172.26285 * 20 10 9 40 40 H 1.08997 * 109.46991 * 292.26318 * 20 10 9 41 41 H 1.09006 * 109.47185 * 58.30402 * 22 21 20 42 42 H 1.09005 * 109.47238 * 178.30135 * 22 21 20 43 43 H 1.09000 * 109.47397 * 298.30384 * 22 21 20 44 44 H 1.09002 * 109.47058 * 60.00120 * 23 21 20 45 45 H 1.09000 * 109.46769 * 179.97438 * 23 21 20 46 46 H 1.08996 * 109.47252 * 300.00174 * 23 21 20 47 47 H 1.09000 * 109.47178 * 83.26632 * 24 21 20 48 48 H 1.09004 * 109.46832 * 203.26218 * 24 21 20 49 49 H 1.09001 * 109.47679 * 323.26134 * 24 21 20 50 50 H 1.08000 * 120.08931 * 179.72561 * 25 5 4 51 51 H 1.08004 * 119.90881 * 180.25243 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2007 0.0000 4 6 3.5743 1.2090 -0.0005 5 6 4.2770 -0.0001 -0.0016 6 6 5.7488 -0.0002 -0.0028 7 8 6.3551 1.0499 -0.0023 8 6 6.5022 -1.3053 -0.0045 9 6 8.0064 -1.0258 -0.0061 10 7 8.7410 -2.2980 -0.0072 11 6 10.1883 -2.0704 0.0989 12 6 10.9201 -3.3625 -0.1578 13 1 10.3712 -4.2447 -0.4523 14 6 12.2905 -3.4184 -0.0167 15 7 12.9590 -2.3442 0.3423 16 14 13.1977 -5.0198 -0.3355 17 1 12.2239 -6.0716 -0.7240 18 1 14.1778 -4.8234 -1.4338 19 1 13.9127 -5.4376 0.8971 20 6 8.4188 -3.0908 -1.2013 21 6 8.6195 -2.2331 -2.4523 22 6 9.8135 -1.2994 -2.2443 23 6 8.8850 -3.1403 -3.6553 24 6 7.3606 -1.4021 -2.7082 25 6 3.5741 -1.2092 -0.0076 26 6 2.1953 -1.2007 -0.0011 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.6512 2.1335 -0.0004 31 1 4.1100 2.1466 -0.0010 32 1 6.2396 -1.8776 0.8852 33 1 6.2381 -1.8761 -0.8948 34 1 8.2688 -0.4537 -0.8960 35 1 8.2708 -0.4547 0.8840 36 1 10.4941 -1.3272 -0.6374 37 1 10.4271 -1.7102 1.0995 38 1 13.9230 -2.3836 0.4419 39 1 9.0744 -3.9603 -1.2478 40 1 7.3812 -3.4205 -1.1494 41 1 10.7044 -1.8905 -2.0322 42 1 9.9751 -0.7097 -3.1467 43 1 9.6117 -0.6327 -1.4059 44 1 8.0344 -3.8055 -3.8035 45 1 9.0275 -2.5293 -4.5466 46 1 9.7818 -3.7324 -3.4730 47 1 7.3891 -0.5012 -2.0951 48 1 7.3168 -1.1237 -3.7611 49 1 6.4790 -1.9891 -2.4506 50 1 4.1099 -2.1469 -0.0129 51 1 1.6510 -2.1336 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359857137.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:35 Heat of formation + Delta-G solvation = 19.801771 kcal Electronic energy + Delta-G solvation = -27626.301985 eV Core-core repulsion = 24106.074028 eV Total energy + Delta-G solvation = -3520.227956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.64809 -40.58675 -39.25438 -35.42735 -34.68506 -33.93733 -32.68413 -31.79165 -29.49685 -28.93426 -27.85445 -27.81434 -26.67583 -24.71009 -23.55328 -22.93449 -21.63235 -20.58550 -19.72806 -18.60036 -18.01212 -17.15768 -17.00116 -16.50982 -16.19485 -15.92942 -15.86533 -15.50447 -15.14093 -14.98090 -14.69625 -14.50560 -14.38866 -14.34123 -14.13192 -13.76522 -13.42821 -13.21634 -12.98368 -12.91340 -12.79252 -12.65087 -12.51839 -12.45208 -12.34444 -12.26224 -12.12855 -11.90731 -11.82785 -11.74642 -11.57940 -11.26018 -11.04409 -10.74791 -10.62815 -10.51966 -9.93818 -9.65475 -8.50358 -8.13140 -6.18427 -0.30917 0.44846 1.40698 1.42235 1.44101 1.53737 2.43019 2.83885 2.92411 3.20891 3.62597 3.83918 3.91297 3.98510 4.01575 4.05552 4.06962 4.11003 4.23083 4.33555 4.45315 4.56841 4.60865 4.69870 4.72942 4.80442 4.83629 4.86861 4.88092 4.89040 4.93260 4.95738 5.01394 5.11463 5.11820 5.17578 5.25270 5.26581 5.32782 5.37265 5.40807 5.46664 5.51966 5.55826 5.61634 5.65607 5.74370 5.74678 5.99011 6.13204 6.48883 6.55157 6.81421 6.99904 7.48238 8.98943 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.002896 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.752766 B = 9665.661622 C = 9838.264720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.056 4.056 3 C -0.141 4.141 4 C -0.077 4.077 5 C -0.194 4.194 6 C 0.401 3.599 7 O -0.496 6.496 8 C -0.163 4.163 9 C 0.046 3.954 10 N -0.538 5.538 11 C 0.157 3.843 12 C -0.505 4.505 13 H 0.072 0.928 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.957 3.043 17 H -0.259 1.259 18 H -0.283 1.283 19 H -0.286 1.286 20 C 0.063 3.937 21 C -0.089 4.089 22 C -0.158 4.158 23 C -0.130 4.130 24 C -0.150 4.150 25 C -0.066 4.066 26 C -0.137 4.137 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.131 0.869 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.037 0.963 37 H -0.023 1.023 38 H 0.259 0.741 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.040 0.960 47 H 0.050 0.950 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.151 0.849 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.570 1.195 -5.233 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.056 4.056 3 C -0.159 4.159 4 C -0.095 4.095 5 C -0.194 4.194 6 C 0.281 3.719 7 O -0.375 6.375 8 C -0.200 4.200 9 C -0.081 4.081 10 N -0.261 5.261 11 C 0.032 3.968 12 C -0.544 4.544 13 H 0.090 0.910 14 C -0.196 4.196 15 N -0.577 5.577 16 Si 0.783 3.217 17 H -0.183 1.183 18 H -0.209 1.209 19 H -0.212 1.212 20 C -0.065 4.065 21 C -0.091 4.091 22 C -0.214 4.214 23 C -0.188 4.188 24 C -0.206 4.206 25 C -0.084 4.084 26 C -0.155 4.155 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.163 0.837 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.148 0.852 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.054 0.946 37 H -0.005 1.005 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.096 0.904 50 H 0.169 0.831 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -26.229 1.519 -4.759 26.701 hybrid contribution 1.826 0.239 -0.306 1.867 sum -24.403 1.758 -5.065 24.985 Atomic orbital electron populations 1.20949 0.88702 1.04202 1.03628 1.20614 0.97977 0.92793 0.94265 1.21261 0.93101 0.99279 1.02235 1.21499 0.95146 0.97466 0.95395 1.20498 0.93823 0.95604 1.09525 1.22875 0.89165 0.90386 0.69446 1.90503 1.72103 1.36326 1.38534 1.22316 0.94080 0.96760 1.06830 1.22279 0.93285 0.92095 1.00457 1.62221 1.08466 1.16608 1.38777 1.20563 0.83573 0.97677 0.95015 1.21609 0.91671 0.96852 1.44228 0.91024 1.25816 0.98814 0.99420 0.95567 1.70117 1.07746 1.30246 1.49562 0.85509 0.78619 0.80156 0.77421 1.18273 1.20923 1.21190 1.22479 1.00916 0.96770 0.86364 1.21108 0.94753 0.96049 0.97193 1.22754 0.99707 0.99581 0.99356 1.21782 1.01540 0.99068 0.96374 1.22502 0.96825 0.99647 1.01651 1.21741 0.95037 0.97257 0.94369 1.21401 0.93640 0.99048 1.01371 0.89642 0.89920 0.90480 0.83725 0.86238 0.86832 0.85201 0.92494 0.94629 0.94612 1.00526 0.93184 0.90995 0.89818 0.92262 0.94430 0.92445 0.90848 0.92665 0.94129 0.93094 0.92308 0.90367 0.83127 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.00 71.24 0.71 -0.13 16 2 C -0.06 -0.76 5.89 -19.79 -0.12 -0.87 16 3 C -0.14 -2.30 9.68 22.23 0.22 -2.09 16 4 C -0.08 -1.70 9.60 22.58 0.22 -1.48 16 5 C -0.19 -4.49 5.87 -20.15 -0.12 -4.61 16 6 C 0.40 11.56 6.72 28.04 0.19 11.75 16 7 O -0.50 -18.10 15.98 -2.96 -0.05 -18.14 16 8 C -0.16 -4.51 3.20 29.85 0.10 -4.42 16 9 C 0.05 1.76 3.30 86.30 0.28 2.05 16 10 N -0.54 -22.79 4.90 -900.79 -4.41 -27.20 16 11 C 0.16 8.32 4.23 85.56 0.36 8.68 16 12 C -0.51 -27.70 7.35 25.60 0.19 -27.51 16 13 H 0.07 3.78 5.54 -2.91 -0.02 3.76 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.94 -56.92 13.29 21.45 0.28 -56.63 16 16 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 C 0.06 2.24 4.54 86.30 0.39 2.63 16 21 C -0.09 -2.94 0.77 -52.18 -0.04 -2.98 16 22 C -0.16 -6.45 6.18 71.98 0.44 -6.01 16 23 C -0.13 -3.76 8.23 71.98 0.59 -3.17 16 24 C -0.15 -4.06 7.13 71.98 0.51 -3.55 16 25 C -0.07 -1.13 9.47 22.58 0.21 -0.92 16 26 C -0.14 -1.85 9.68 22.23 0.22 -1.63 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16 28 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 29 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 30 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.12 2.84 7.65 -2.91 -0.02 2.82 16 32 H 0.11 2.88 8.09 -2.39 -0.02 2.86 16 33 H 0.13 3.00 3.57 -2.39 -0.01 2.99 16 34 H 0.06 2.25 2.66 -2.39 -0.01 2.25 16 35 H 0.04 1.52 8.09 -2.39 -0.02 1.51 16 36 H 0.04 1.99 3.26 -10.99 -0.04 1.95 16 37 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 38 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.07 2.92 4.97 -2.39 -0.01 2.91 16 40 H 0.08 2.41 6.35 -2.39 -0.02 2.39 16 41 H 0.06 2.89 5.52 -2.38 -0.01 2.88 16 42 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.06 2.55 3.28 -2.39 -0.01 2.55 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.05 1.47 8.12 -2.39 -0.02 1.45 16 46 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 47 H 0.05 1.57 4.40 -2.39 -0.01 1.56 16 48 H 0.06 1.44 7.92 -2.38 -0.02 1.42 16 49 H 0.08 1.71 5.72 -2.39 -0.01 1.70 16 50 H 0.15 2.00 7.05 -2.91 -0.02 1.98 16 51 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -69.94 375.79 3.58 -66.35 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.91 Total: 23.04 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: 4.82 Total: -33.74 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -4.13 Total: -83.83 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.05 Total: -18.14 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.94 3.58 -66.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359857137.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.156 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds