Wall clock time and date at job start Tue Mar 31 2020 11:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38408 * 119.82479 * 2 1 4 4 C 1.37883 * 120.17417 * 180.02562 * 3 2 1 5 5 C 1.39853 * 119.82333 * 359.97438 * 4 3 2 6 6 C 1.47167 * 120.17212 * 179.97438 * 5 4 3 7 7 O 1.21251 * 120.00158 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47073 * 180.02562 * 8 6 5 10 10 N 1.46895 * 109.47040 * 180.02562 * 9 8 6 11 11 C 1.46905 * 111.00121 * 190.00016 * 10 9 8 12 12 C 1.50700 * 109.47214 * 168.81924 * 11 10 9 13 13 H 1.08000 * 119.99537 * 355.11673 * 12 11 10 14 14 C 1.37874 * 119.99975 * 175.12122 * 12 11 10 15 15 N 1.31521 * 119.99933 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99987 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47024 * 89.99944 * 16 14 12 18 18 H 1.48500 * 109.47056 * 209.99679 * 16 14 12 19 19 H 1.48497 * 109.47072 * 329.99635 * 16 14 12 20 20 C 1.46904 * 110.99697 * 66.05219 * 10 9 8 21 21 C 1.52998 * 109.47397 * 61.50218 * 20 10 9 22 22 C 1.53000 * 109.47065 * 177.93624 * 21 20 10 23 23 C 1.52994 * 109.47482 * 64.99731 * 22 21 20 24 24 C 1.53001 * 109.47040 * 185.00155 * 22 21 20 25 25 C 1.39851 * 119.65800 * 0.26044 * 5 4 3 26 26 C 1.37893 * 119.82382 * 359.46323 * 25 5 4 27 27 H 1.09001 * 109.46868 * 90.00240 * 1 2 3 28 28 H 1.08996 * 109.47280 * 210.00495 * 1 2 3 29 29 H 1.09000 * 109.46979 * 330.00324 * 1 2 3 30 30 H 1.08000 * 119.91479 * 359.97094 * 3 2 1 31 31 H 1.07997 * 120.09010 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47299 * 300.00753 * 8 6 5 33 33 H 1.09004 * 109.46949 * 60.00916 * 8 6 5 34 34 H 1.09005 * 109.47022 * 300.00501 * 9 8 6 35 35 H 1.09004 * 109.46573 * 60.00578 * 9 8 6 36 36 H 1.08997 * 109.47243 * 288.82574 * 11 10 9 37 37 H 1.09004 * 109.46844 * 48.81927 * 11 10 9 38 38 H 0.97002 * 119.99944 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.46941 * 181.49995 * 20 10 9 40 40 H 1.08995 * 109.47100 * 301.49753 * 20 10 9 41 41 H 1.09003 * 109.47003 * 297.93223 * 21 20 10 42 42 H 1.08999 * 109.47057 * 57.93061 * 21 20 10 43 43 H 1.09007 * 109.46710 * 304.99226 * 22 21 20 44 44 H 1.08999 * 109.47335 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.46904 * 300.00158 * 23 22 21 46 46 H 1.08998 * 109.47225 * 59.99531 * 23 22 21 47 47 H 1.09001 * 109.47188 * 59.99395 * 24 22 21 48 48 H 1.08999 * 109.47249 * 179.97438 * 24 22 21 49 49 H 1.09005 * 109.47028 * 299.99770 * 24 22 21 50 50 H 1.07996 * 120.09099 * 179.72586 * 25 5 4 51 51 H 1.07997 * 119.91687 * 180.25701 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2008 0.0000 4 6 3.5742 1.2092 -0.0005 5 6 4.2771 0.0001 -0.0005 6 6 5.7488 0.0001 -0.0017 7 8 6.3551 1.0502 -0.0021 8 6 6.5023 -1.3050 -0.0011 9 6 8.0066 -1.0254 -0.0018 10 7 8.7411 -2.2975 -0.0019 11 6 10.1741 -2.0781 0.2355 12 6 10.8474 -3.3999 0.5016 13 1 10.2573 -4.3016 0.5731 14 6 12.2165 -3.4578 0.6536 15 7 12.9349 -2.3597 0.5660 16 14 13.0511 -5.0963 0.9826 17 1 13.4166 -5.7335 -0.3079 18 1 14.2776 -4.8738 1.7897 19 1 12.1226 -5.9840 1.7276 20 6 8.5215 -3.0320 -1.2550 21 6 9.0404 -2.2016 -2.4306 22 6 8.8587 -2.9882 -3.7303 23 6 7.3662 -3.1863 -4.0021 24 6 9.4895 -2.2125 -4.8884 25 6 3.5743 -1.2090 -0.0055 26 6 2.1954 -1.2007 0.0008 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6511 2.1336 -0.0005 31 1 4.1099 2.1469 -0.0010 32 1 6.2396 -1.8758 0.8895 33 1 6.2384 -1.8773 -0.8905 34 1 8.2695 -0.4543 -0.8923 35 1 8.2702 -0.4533 0.8878 36 1 10.6209 -1.6130 -0.6431 37 1 10.3035 -1.4243 1.0981 38 1 13.8982 -2.4005 0.6726 39 1 9.0551 -3.9818 -1.2177 40 1 7.4556 -3.2190 -1.3847 41 1 8.4817 -1.2675 -2.4902 42 1 10.0980 -1.9835 -2.2826 43 1 9.3433 -3.9602 -3.6374 44 1 7.2367 -3.7463 -4.9283 45 1 6.9168 -3.7390 -3.1771 46 1 6.8816 -2.2144 -4.0949 47 1 10.5528 -2.0713 -4.6946 48 1 9.3605 -2.7730 -5.8142 49 1 9.0050 -1.2404 -4.9812 50 1 4.1100 -2.1467 -0.0100 51 1 1.6512 -2.1335 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359857744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:29 Heat of formation + Delta-G solvation = -35.531046 kcal Electronic energy + Delta-G solvation = -26579.996777 eV Core-core repulsion = 23057.369409 eV Total energy + Delta-G solvation = -3522.627367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.17731 -38.62240 -37.70866 -35.14416 -33.26435 -32.69002 -31.49054 -30.64542 -28.42321 -27.90379 -26.91926 -26.13240 -23.92025 -23.12743 -22.84128 -21.77218 -20.09082 -19.66547 -18.80855 -17.09469 -16.17847 -15.86207 -15.55565 -15.48178 -15.13709 -14.71272 -14.61849 -14.24692 -14.07588 -14.00494 -13.77802 -13.70715 -13.34148 -12.93249 -12.61365 -12.53611 -12.42566 -12.18467 -12.04052 -11.93028 -11.86311 -11.69145 -11.47940 -11.22982 -11.01862 -10.75020 -10.63139 -10.60664 -10.58938 -10.31891 -10.24122 -9.92940 -9.62331 -9.51703 -9.22592 -9.12473 -8.93007 -8.38921 -7.11890 -5.98145 -3.99092 0.52564 1.15561 2.38684 3.33482 3.39988 3.43884 3.60549 3.98263 4.46211 4.50749 4.54267 4.73862 4.91049 5.04781 5.13348 5.18986 5.21771 5.23753 5.26756 5.30789 5.37241 5.38733 5.41689 5.44626 5.64395 5.74391 5.77539 5.79947 5.82834 5.93004 5.96538 6.02048 6.09086 6.15660 6.18236 6.21427 6.24945 6.26338 6.35167 6.41833 6.53043 6.59020 6.63328 6.66798 6.82773 6.98298 7.36961 7.50115 7.61223 7.85396 8.15485 8.24647 8.60070 9.08899 9.64669 11.12438 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.002912 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.224562 B = 9612.564845 C =10488.368637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.061 4.061 3 C -0.136 4.136 4 C -0.060 4.060 5 C -0.170 4.170 6 C 0.395 3.605 7 O -0.452 6.452 8 C -0.161 4.161 9 C 0.061 3.939 10 N -0.536 5.536 11 C 0.189 3.811 12 C -0.502 4.502 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.895 3.105 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.064 3.936 21 C -0.153 4.153 22 C -0.092 4.092 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.066 4.066 26 C -0.135 4.135 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.004 0.996 37 H 0.024 0.976 38 H 0.260 0.740 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.048 0.952 50 H 0.136 0.864 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.031 2.746 -5.606 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.061 4.061 3 C -0.154 4.154 4 C -0.079 4.079 5 C -0.171 4.171 6 C 0.272 3.728 7 O -0.327 6.327 8 C -0.198 4.198 9 C -0.067 4.067 10 N -0.259 5.259 11 C 0.064 3.936 12 C -0.541 4.541 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.723 3.277 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.064 4.064 21 C -0.192 4.192 22 C -0.112 4.112 23 C -0.202 4.202 24 C -0.203 4.203 25 C -0.084 4.084 26 C -0.153 4.153 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.021 0.979 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.153 0.847 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.687 3.079 -5.173 23.472 hybrid contribution 0.871 -0.348 -0.497 1.062 sum -21.815 2.731 -5.671 22.705 Atomic orbital electron populations 1.20870 0.90994 1.03077 1.02603 1.20196 0.96287 0.93262 0.96403 1.21014 0.93974 0.97755 1.02684 1.21442 0.93997 0.98013 0.94411 1.20656 0.95440 0.94248 1.06735 1.22664 0.87898 0.91224 0.70984 1.90514 1.71091 1.35141 1.35943 1.22049 0.97212 0.95856 1.04699 1.21827 0.90865 0.92766 1.01283 1.62361 1.13705 1.17610 1.32211 1.19776 0.80539 0.97313 0.95961 1.21133 0.91307 0.93843 1.47834 0.91969 1.24978 0.97461 0.96440 0.95745 1.69966 1.06155 1.26995 1.50709 0.86549 0.78973 0.84046 0.78153 1.20820 1.21356 1.19816 1.22110 0.98792 0.98407 0.87103 1.22285 1.03094 0.98901 0.94920 1.21037 0.95502 0.99565 0.95053 1.21873 0.96418 1.01067 1.00877 1.21833 1.00959 0.99803 0.97686 1.21534 0.94215 0.97653 0.95047 1.21036 0.94110 0.97736 1.02442 0.90801 0.91223 0.91321 0.85624 0.84961 0.87727 0.88590 0.94766 0.91132 0.97855 0.95809 0.93016 0.90181 0.92880 0.92991 0.90527 0.91190 0.93438 0.92451 0.93294 0.92638 0.93387 0.93238 0.84653 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.00 36.01 0.36 -0.30 16 2 C -0.06 -0.51 5.89 -104.50 -0.62 -1.13 16 3 C -0.14 -1.24 9.68 -39.65 -0.38 -1.62 16 4 C -0.06 -0.68 9.60 -39.11 -0.38 -1.05 16 5 C -0.17 -2.04 5.87 -105.06 -0.62 -2.66 16 6 C 0.40 5.68 7.12 -30.68 -0.22 5.47 16 7 O -0.45 -7.92 15.98 5.58 0.09 -7.83 16 8 C -0.16 -2.28 4.24 -27.88 -0.12 -2.40 16 9 C 0.06 1.14 4.03 -3.82 -0.02 1.12 16 10 N -0.54 -11.26 4.69 -236.06 -1.11 -12.37 16 11 C 0.19 4.89 4.54 -4.97 -0.02 4.87 16 12 C -0.50 -13.95 8.39 -34.44 -0.29 -14.24 16 13 H 0.06 1.71 7.38 -52.49 -0.39 1.32 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.06 1.18 4.66 -3.82 -0.02 1.17 16 21 C -0.15 -2.70 4.02 -26.73 -0.11 -2.81 16 22 C -0.09 -1.36 2.92 -90.62 -0.26 -1.63 16 23 C -0.15 -1.79 8.95 37.15 0.33 -1.46 16 24 C -0.15 -1.99 9.19 37.16 0.34 -1.65 16 25 C -0.07 -0.66 9.47 -39.10 -0.37 -1.03 16 26 C -0.14 -1.16 9.68 -39.65 -0.38 -1.54 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.13 1.49 7.65 -52.49 -0.40 1.09 16 32 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.10 1.22 6.46 -51.93 -0.34 0.88 16 34 H 0.03 0.67 6.04 -51.93 -0.31 0.35 16 35 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 36 H 0.00 0.10 5.99 -51.93 -0.31 -0.21 16 37 H 0.02 0.67 7.91 -51.93 -0.41 0.26 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.08 1.63 6.98 -51.93 -0.36 1.27 16 40 H 0.05 0.83 4.93 -51.93 -0.26 0.57 16 41 H 0.05 0.90 6.41 -51.93 -0.33 0.57 16 42 H 0.08 1.63 6.21 -51.93 -0.32 1.30 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.68 6.61 -51.93 -0.34 0.34 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.14 1.13 7.05 -52.49 -0.37 0.76 16 51 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 401.69 15.07 6.05 6.05 Total: -1.00 -31.34 401.69 -10.87 -42.20 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.76 Total: 0.80 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -2.86 Total: -19.43 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.37 Total: -38.43 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.34 -10.87 -42.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359857744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.672 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds