Wall clock time and date at job start Tue Mar 31 2020 11:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38408 * 119.82479 * 2 1 4 4 C 1.37883 * 120.17417 * 180.02562 * 3 2 1 5 5 C 1.39853 * 119.82333 * 359.97438 * 4 3 2 6 6 C 1.47167 * 120.17212 * 179.97438 * 5 4 3 7 7 O 1.21251 * 120.00158 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47073 * 180.02562 * 8 6 5 10 10 N 1.46895 * 109.47040 * 180.02562 * 9 8 6 11 11 C 1.46905 * 111.00121 * 190.00016 * 10 9 8 12 12 C 1.50700 * 109.47214 * 168.81924 * 11 10 9 13 13 H 1.08000 * 119.99537 * 355.11673 * 12 11 10 14 14 C 1.37874 * 119.99975 * 175.12122 * 12 11 10 15 15 N 1.31521 * 119.99933 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99987 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47024 * 89.99944 * 16 14 12 18 18 H 1.48500 * 109.47056 * 209.99679 * 16 14 12 19 19 H 1.48497 * 109.47072 * 329.99635 * 16 14 12 20 20 C 1.46904 * 110.99697 * 66.05219 * 10 9 8 21 21 C 1.52998 * 109.47397 * 61.50218 * 20 10 9 22 22 C 1.53000 * 109.47065 * 177.93624 * 21 20 10 23 23 C 1.52994 * 109.47482 * 64.99731 * 22 21 20 24 24 C 1.53001 * 109.47040 * 185.00155 * 22 21 20 25 25 C 1.39851 * 119.65800 * 0.26044 * 5 4 3 26 26 C 1.37893 * 119.82382 * 359.46323 * 25 5 4 27 27 H 1.09001 * 109.46868 * 90.00240 * 1 2 3 28 28 H 1.08996 * 109.47280 * 210.00495 * 1 2 3 29 29 H 1.09000 * 109.46979 * 330.00324 * 1 2 3 30 30 H 1.08000 * 119.91479 * 359.97094 * 3 2 1 31 31 H 1.07997 * 120.09010 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47299 * 300.00753 * 8 6 5 33 33 H 1.09004 * 109.46949 * 60.00916 * 8 6 5 34 34 H 1.09005 * 109.47022 * 300.00501 * 9 8 6 35 35 H 1.09004 * 109.46573 * 60.00578 * 9 8 6 36 36 H 1.08997 * 109.47243 * 288.82574 * 11 10 9 37 37 H 1.09004 * 109.46844 * 48.81927 * 11 10 9 38 38 H 0.97002 * 119.99944 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.46941 * 181.49995 * 20 10 9 40 40 H 1.08995 * 109.47100 * 301.49753 * 20 10 9 41 41 H 1.09003 * 109.47003 * 297.93223 * 21 20 10 42 42 H 1.08999 * 109.47057 * 57.93061 * 21 20 10 43 43 H 1.09007 * 109.46710 * 304.99226 * 22 21 20 44 44 H 1.08999 * 109.47335 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.46904 * 300.00158 * 23 22 21 46 46 H 1.08998 * 109.47225 * 59.99531 * 23 22 21 47 47 H 1.09001 * 109.47188 * 59.99395 * 24 22 21 48 48 H 1.08999 * 109.47249 * 179.97438 * 24 22 21 49 49 H 1.09005 * 109.47028 * 299.99770 * 24 22 21 50 50 H 1.07996 * 120.09099 * 179.72586 * 25 5 4 51 51 H 1.07997 * 119.91687 * 180.25701 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2008 0.0000 4 6 3.5742 1.2092 -0.0005 5 6 4.2771 0.0001 -0.0005 6 6 5.7488 0.0001 -0.0017 7 8 6.3551 1.0502 -0.0021 8 6 6.5023 -1.3050 -0.0011 9 6 8.0066 -1.0254 -0.0018 10 7 8.7411 -2.2975 -0.0019 11 6 10.1741 -2.0781 0.2355 12 6 10.8474 -3.3999 0.5016 13 1 10.2573 -4.3016 0.5731 14 6 12.2165 -3.4578 0.6536 15 7 12.9349 -2.3597 0.5660 16 14 13.0511 -5.0963 0.9826 17 1 13.4166 -5.7335 -0.3079 18 1 14.2776 -4.8738 1.7897 19 1 12.1226 -5.9840 1.7276 20 6 8.5215 -3.0320 -1.2550 21 6 9.0404 -2.2016 -2.4306 22 6 8.8587 -2.9882 -3.7303 23 6 7.3662 -3.1863 -4.0021 24 6 9.4895 -2.2125 -4.8884 25 6 3.5743 -1.2090 -0.0055 26 6 2.1954 -1.2007 0.0008 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6511 2.1336 -0.0005 31 1 4.1099 2.1469 -0.0010 32 1 6.2396 -1.8758 0.8895 33 1 6.2384 -1.8773 -0.8905 34 1 8.2695 -0.4543 -0.8923 35 1 8.2702 -0.4533 0.8878 36 1 10.6209 -1.6130 -0.6431 37 1 10.3035 -1.4243 1.0981 38 1 13.8982 -2.4005 0.6726 39 1 9.0551 -3.9818 -1.2177 40 1 7.4556 -3.2190 -1.3847 41 1 8.4817 -1.2675 -2.4902 42 1 10.0980 -1.9835 -2.2826 43 1 9.3433 -3.9602 -3.6374 44 1 7.2367 -3.7463 -4.9283 45 1 6.9168 -3.7390 -3.1771 46 1 6.8816 -2.2144 -4.0949 47 1 10.5528 -2.0713 -4.6946 48 1 9.3605 -2.7730 -5.8142 49 1 9.0050 -1.2404 -4.9812 50 1 4.1100 -2.1467 -0.0100 51 1 1.6512 -2.1335 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359857744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:27 Heat of formation + Delta-G solvation = -52.241153 kcal Electronic energy + Delta-G solvation = -26580.721381 eV Core-core repulsion = 23057.369409 eV Total energy + Delta-G solvation = -3523.351972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.18318 -39.71854 -39.08458 -36.52109 -34.81817 -33.97747 -32.55253 -31.71143 -30.04077 -28.93302 -27.98244 -27.67843 -25.31382 -24.79982 -23.55996 -22.90458 -21.43822 -20.78899 -20.21187 -18.37633 -18.10211 -17.09065 -16.88272 -16.46327 -16.42336 -16.15206 -15.78436 -15.65907 -15.17346 -14.93685 -14.63207 -14.56571 -14.41704 -14.36028 -14.29144 -13.94675 -13.55005 -13.25350 -13.07701 -12.99095 -12.93037 -12.79907 -12.72595 -12.61307 -12.52370 -12.32148 -12.19801 -12.01839 -11.91138 -11.84333 -11.68627 -11.42964 -11.24731 -11.11268 -10.69667 -10.58617 -9.94273 -9.66425 -8.91413 -8.17623 -6.27551 -0.32513 0.44385 1.40777 1.41791 1.42462 1.53950 2.40737 2.82979 2.86405 3.14943 3.51948 3.81674 3.90708 3.94473 3.98144 4.01400 4.06360 4.15694 4.16243 4.30758 4.40983 4.43802 4.52034 4.60168 4.70026 4.78982 4.80753 4.83135 4.83946 4.87021 4.88456 4.89821 4.94513 5.02712 5.07209 5.10323 5.12092 5.22410 5.25863 5.26372 5.36123 5.37328 5.42817 5.46543 5.55953 5.57010 5.61193 5.70051 5.98456 6.08342 6.36902 6.50662 6.65733 6.89490 7.41805 8.93404 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.002912 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.224562 B = 9612.564845 C =10488.368637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.056 4.056 3 C -0.141 4.141 4 C -0.077 4.077 5 C -0.194 4.194 6 C 0.400 3.600 7 O -0.499 6.499 8 C -0.148 4.148 9 C 0.066 3.934 10 N -0.537 5.537 11 C 0.204 3.796 12 C -0.513 4.513 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.938 5.938 16 Si 0.968 3.032 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.261 1.261 20 C 0.067 3.933 21 C -0.143 4.143 22 C -0.091 4.091 23 C -0.139 4.139 24 C -0.144 4.144 25 C -0.064 4.064 26 C -0.137 4.137 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.020 0.980 35 H 0.044 0.956 36 H -0.024 1.024 37 H -0.013 1.013 38 H 0.262 0.738 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.029 0.971 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.052 0.948 50 H 0.153 0.847 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.639 0.216 -6.476 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.056 4.056 3 C -0.159 4.159 4 C -0.095 4.095 5 C -0.195 4.195 6 C 0.281 3.719 7 O -0.377 6.377 8 C -0.186 4.186 9 C -0.063 4.063 10 N -0.259 5.259 11 C 0.078 3.922 12 C -0.551 4.551 13 H 0.084 0.916 14 C -0.199 4.199 15 N -0.579 5.579 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.186 1.186 20 C -0.061 4.061 21 C -0.182 4.182 22 C -0.110 4.110 23 C -0.196 4.196 24 C -0.201 4.201 25 C -0.082 4.082 26 C -0.155 4.155 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.163 0.837 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.038 0.962 35 H 0.063 0.937 36 H -0.007 1.007 37 H 0.006 0.994 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.090 0.910 49 H 0.071 0.929 50 H 0.170 0.830 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -26.333 0.533 -6.052 27.025 hybrid contribution 1.890 0.499 -0.231 1.968 sum -24.443 1.032 -6.283 25.259 Atomic orbital electron populations 1.20951 0.88675 1.04224 1.03636 1.20624 0.97998 0.92793 0.94177 1.21261 0.93067 0.99306 1.02269 1.21499 0.95173 0.97452 0.95396 1.20470 0.93657 0.95677 1.09702 1.22907 0.89289 0.90349 0.69399 1.90506 1.72170 1.36412 1.38630 1.21970 0.93361 0.96579 1.06644 1.21762 0.93842 0.91285 0.99396 1.62288 1.10664 1.18800 1.34178 1.19404 0.83679 0.95923 0.93219 1.21417 0.91842 0.94321 1.47566 0.91602 1.25934 0.98249 1.00376 0.95331 1.70118 1.06482 1.29558 1.51726 0.85399 0.77756 0.79242 0.78344 1.19817 1.21110 1.18552 1.22171 1.00956 0.96990 0.85944 1.22140 0.99898 0.99408 0.96716 1.21031 0.97940 0.98570 0.93494 1.21824 0.93755 1.01827 1.02226 1.21820 0.99647 1.00328 0.98348 1.21754 0.95040 0.97250 0.94198 1.21411 0.93641 0.99056 1.01352 0.89632 0.89882 0.90481 0.83719 0.86303 0.86041 0.86056 0.96183 0.93745 1.00666 0.99442 0.92910 0.92043 0.88771 0.92920 0.95260 0.91915 0.91425 0.91665 0.92800 0.94618 0.90976 0.92853 0.82950 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.00 71.24 0.71 -0.13 16 2 C -0.06 -0.75 5.89 -19.78 -0.12 -0.86 16 3 C -0.14 -2.32 9.68 22.23 0.22 -2.10 16 4 C -0.08 -1.71 9.60 22.58 0.22 -1.50 16 5 C -0.19 -4.52 5.87 -20.15 -0.12 -4.64 16 6 C 0.40 11.68 7.12 28.03 0.20 11.88 16 7 O -0.50 -18.58 15.98 -2.94 -0.05 -18.63 16 8 C -0.15 -4.11 4.24 29.85 0.13 -3.99 16 9 C 0.07 2.55 4.03 86.31 0.35 2.90 16 10 N -0.54 -23.33 4.69 -900.76 -4.23 -27.56 16 11 C 0.20 11.27 4.54 85.56 0.39 11.65 16 12 C -0.51 -29.43 8.39 25.60 0.21 -29.22 16 13 H 0.07 3.66 7.38 -2.91 -0.02 3.64 16 14 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 15 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 16 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 20 C 0.07 2.46 4.66 86.30 0.40 2.86 16 21 C -0.14 -5.18 4.02 30.59 0.12 -5.06 16 22 C -0.09 -2.61 2.92 -10.80 -0.03 -2.64 16 23 C -0.14 -3.00 8.95 71.98 0.64 -2.36 16 24 C -0.14 -3.86 9.19 71.98 0.66 -3.20 16 25 C -0.06 -1.10 9.47 22.58 0.21 -0.88 16 26 C -0.14 -1.83 9.68 22.23 0.22 -1.62 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 29 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 30 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 31 H 0.12 2.86 7.65 -2.91 -0.02 2.84 16 32 H 0.12 3.01 8.10 -2.39 -0.02 2.99 16 33 H 0.12 2.74 6.46 -2.38 -0.02 2.73 16 34 H 0.02 0.83 6.04 -2.38 -0.01 0.82 16 35 H 0.04 1.93 7.87 -2.38 -0.02 1.91 16 36 H -0.02 -1.46 5.99 -2.39 -0.01 -1.48 16 37 H -0.01 -0.77 7.91 -2.39 -0.02 -0.79 16 38 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.06 2.51 6.98 -2.38 -0.02 2.49 16 40 H 0.09 2.69 4.93 -2.39 -0.01 2.68 16 41 H 0.05 1.88 6.41 -2.39 -0.02 1.87 16 42 H 0.03 1.33 6.21 -2.39 -0.01 1.31 16 43 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 1.30 6.61 -2.39 -0.02 1.28 16 46 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 50 H 0.15 1.97 7.05 -2.91 -0.02 1.95 16 51 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -73.10 401.69 3.80 -69.30 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.89 Total: 16.36 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 4.88 Total: -28.51 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -3.94 Total: -85.50 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.05 Total: -18.63 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -73.10 3.80 -69.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359857744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.056 kcal (2) G-P(sol) polarization free energy of solvation -73.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds