Wall clock time and date at job start Tue Mar 31 2020 12:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46922 * 2 1 4 4 C 1.53004 * 109.47188 * 119.99954 * 2 1 3 5 5 C 1.52997 * 109.46958 * 300.00300 * 4 2 1 6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47301 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00016 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97953 * 7 6 5 13 13 C 1.52997 * 109.47093 * 239.99772 * 2 1 3 14 14 N 1.46500 * 109.47160 * 60.00174 * 13 2 1 15 15 C 1.34775 * 120.00332 * 180.02562 * 14 13 2 16 16 O 1.21288 * 119.99922 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00203 * 180.02562 * 15 14 13 18 18 C 1.53007 * 109.47033 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47029 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99856 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00302 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99712 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00330 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47274 * 59.99880 * 23 21 19 25 25 H 1.48507 * 109.47137 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46821 * 299.99872 * 23 21 19 27 27 H 1.08992 * 109.46703 * 300.00034 * 1 2 3 28 28 H 1.08997 * 109.46778 * 60.00395 * 1 2 3 29 29 H 1.08996 * 109.46818 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46658 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47072 * 299.99425 * 3 2 1 32 32 H 1.08992 * 109.47002 * 60.00154 * 3 2 1 33 33 H 1.08992 * 109.47400 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.46626 * 59.99829 * 4 2 1 35 35 H 1.08995 * 109.47671 * 59.99728 * 5 4 2 36 36 H 1.09004 * 109.46984 * 299.99744 * 5 4 2 37 37 H 1.09005 * 109.47610 * 59.99944 * 6 5 4 38 38 H 1.09000 * 109.47256 * 299.99285 * 6 5 4 39 39 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 40 40 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 41 41 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 42 42 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 43 43 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 44 44 H 1.09003 * 109.47204 * 179.97438 * 13 2 1 45 45 H 1.09004 * 109.47310 * 300.00097 * 13 2 1 46 46 H 0.97006 * 120.00047 * 0.02562 * 14 13 2 47 47 H 1.09000 * 109.46890 * 299.99229 * 17 15 14 48 48 H 1.08992 * 109.47737 * 59.99797 * 17 15 14 49 49 H 1.09000 * 109.46700 * 299.99403 * 18 17 15 50 50 H 1.09000 * 109.46819 * 59.99664 * 18 17 15 51 51 H 0.96996 * 120.00156 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0395 -0.7216 3.7477 7 6 1.5376 -0.0108 4.9782 8 6 0.3295 -0.3754 5.5425 9 6 -0.1306 0.2762 6.6715 10 6 0.6177 1.2919 7.2365 11 6 1.8232 1.6601 6.6691 12 6 2.2855 1.0054 5.5428 13 6 2.0401 -0.7213 -1.2492 14 7 1.5518 -0.0307 -2.4454 15 6 1.8769 -0.4915 -3.6695 16 8 2.5742 -1.4776 -3.7808 17 6 1.3751 0.2193 -4.8999 18 6 1.8850 -0.5021 -6.1492 19 6 1.3826 0.2082 -7.3797 20 1 0.7614 1.0862 -7.2806 21 6 1.7160 -0.2626 -8.6319 22 7 2.4721 -1.3320 -8.7526 23 14 1.0939 0.6184 -10.1572 24 1 1.5890 2.0184 -10.1568 25 1 1.5887 -0.0819 -11.3697 26 1 -0.3911 0.6185 -10.1576 27 1 -0.3632 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 -0.7209 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 0.4401 0.0000 2.4985 36 1 1.8934 1.0277 2.4985 37 1 3.1296 -0.7220 3.7480 38 1 1.6757 -1.7491 3.7475 39 1 -0.2549 -1.1693 5.1013 40 1 -1.0747 -0.0084 7.1121 41 1 0.2583 1.8007 8.1189 42 1 2.4058 2.4566 7.1080 43 1 3.2298 1.2897 5.1024 44 1 3.1301 -0.7209 -1.2494 45 1 1.6767 -1.7490 -1.2492 46 1 0.9944 0.7582 -2.3564 47 1 0.2851 0.2200 -4.8999 48 1 1.7391 1.2466 -4.9001 49 1 2.9750 -0.5025 -6.1490 50 1 1.5212 -1.5297 -6.1493 51 1 2.7069 -1.6630 -9.6335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360204227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:06 Heat of formation + Delta-G solvation = -76.305747 kcal Electronic energy + Delta-G solvation = -25291.313792 eV Core-core repulsion = 21766.918301 eV Total energy + Delta-G solvation = -3524.395491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.91702 -40.17969 -39.02543 -35.75867 -35.50932 -34.06006 -32.91650 -31.72002 -30.86878 -28.47181 -28.16414 -27.35971 -26.50443 -23.85013 -23.41140 -22.84265 -21.60669 -21.22850 -19.61773 -18.78582 -17.65928 -17.41791 -16.91288 -16.68950 -16.44801 -16.40157 -16.01209 -15.63210 -15.33531 -15.08193 -14.84324 -14.43217 -14.24619 -14.12980 -14.11435 -14.07886 -13.70233 -13.30814 -13.22466 -12.86446 -12.81878 -12.72842 -12.53669 -12.50434 -12.50268 -11.99647 -11.93624 -11.90394 -11.69456 -11.63616 -11.45129 -11.32126 -11.30963 -11.21748 -10.69071 -10.55496 -10.01963 -9.78003 -9.52797 -8.17067 -6.31476 0.50126 0.54084 1.42466 1.47167 1.54911 1.74362 2.30129 2.46680 2.92351 3.15632 3.63800 3.84493 3.84814 3.99273 3.99796 4.10745 4.21052 4.27038 4.33286 4.36585 4.50894 4.54094 4.58829 4.60781 4.67843 4.71386 4.72549 4.75557 4.88135 4.90059 4.91314 5.00976 5.07830 5.09584 5.16344 5.19060 5.21360 5.26426 5.28968 5.38268 5.48235 5.54588 5.56272 5.57626 5.63127 5.63920 5.67494 5.80186 5.86109 6.18202 6.18365 6.63738 6.86801 7.37300 7.39444 8.95361 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.041498 B = 0.001631 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.576427 B =17165.235032 C =17332.888511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C -0.144 4.144 4 C -0.104 4.104 5 C -0.104 4.104 6 C -0.081 4.081 7 C -0.088 4.088 8 C -0.132 4.132 9 C -0.129 4.129 10 C -0.139 4.139 11 C -0.129 4.129 12 C -0.132 4.132 13 C 0.128 3.872 14 N -0.714 5.714 15 C 0.509 3.491 16 O -0.592 6.592 17 C -0.120 4.120 18 C 0.042 3.958 19 C -0.545 4.545 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.937 5.937 23 Si 0.975 3.025 24 H -0.262 1.262 25 H -0.288 1.288 26 H -0.262 1.262 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.413 0.587 47 H 0.103 0.897 48 H 0.103 0.897 49 H -0.018 1.018 50 H -0.019 1.019 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 8.195 34.602 36.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.064 4.064 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.142 4.142 6 C -0.118 4.118 7 C -0.088 4.088 8 C -0.150 4.150 9 C -0.147 4.147 10 C -0.156 4.156 11 C -0.147 4.147 12 C -0.150 4.150 13 C 0.004 3.996 14 N -0.368 5.368 15 C 0.297 3.703 16 O -0.473 6.473 17 C -0.160 4.160 18 C 0.004 3.996 19 C -0.583 4.583 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.798 3.202 24 H -0.187 1.187 25 H -0.213 1.213 26 H -0.187 1.187 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.251 0.749 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.000 1.000 50 H 0.000 1.000 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.220 7.389 34.423 35.592 hybrid contribution -0.064 0.091 -0.986 0.992 sum -5.284 7.480 33.437 34.669 Atomic orbital electron populations 1.21952 0.93391 1.02188 1.02635 1.20708 0.96668 0.96148 0.92850 1.21952 1.01080 0.94499 1.02635 1.21552 1.00876 0.99217 0.92577 1.21578 1.01169 0.99476 0.91935 1.20638 1.01095 0.98908 0.91159 1.20101 0.94987 0.96689 0.96982 1.21302 0.96251 1.00753 0.96705 1.21435 1.00492 0.96462 0.96286 1.21439 0.95365 0.98023 1.00818 1.21435 0.96767 1.00170 0.96301 1.21301 1.00486 0.96487 0.96738 1.21431 0.98305 0.95813 0.84073 1.45958 1.53905 1.32430 1.04551 1.21333 0.79077 0.83879 0.86005 1.90652 1.40081 1.28850 1.87670 1.21635 1.02686 1.00610 0.91031 1.18688 0.94488 0.94327 0.92096 1.21698 1.31960 1.13008 0.91637 0.90576 1.26148 0.95180 0.95768 1.03323 1.70179 1.38141 1.24904 1.24511 0.85361 0.79038 0.78616 0.77136 1.18683 1.21326 1.18695 0.90572 0.92535 0.92893 0.92892 0.92534 0.90572 0.91652 0.91652 0.91295 0.91289 0.90767 0.90760 0.85302 0.84726 0.84668 0.84725 0.85304 0.93158 0.93153 0.74866 0.87834 0.87836 1.00000 1.00008 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.95 71.98 0.57 -1.48 16 2 C -0.06 -1.00 0.56 -52.18 -0.03 -1.03 16 3 C -0.14 -2.06 7.95 71.98 0.57 -1.48 16 4 C -0.10 -1.41 4.27 30.59 0.13 -1.28 16 5 C -0.10 -1.16 4.49 30.59 0.14 -1.03 16 6 C -0.08 -0.92 5.34 29.85 0.16 -0.76 16 7 C -0.09 -1.17 5.13 -19.86 -0.10 -1.27 16 8 C -0.13 -1.73 9.70 22.27 0.22 -1.52 16 9 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 10 C -0.14 -1.64 10.05 22.27 0.22 -1.41 16 11 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 12 C -0.13 -1.73 9.70 22.27 0.22 -1.52 16 13 C 0.13 3.12 4.56 86.38 0.39 3.51 16 14 N -0.71 -19.53 4.96 -463.05 -2.30 -21.83 16 15 C 0.51 20.13 7.83 87.66 0.69 20.82 16 16 O -0.59 -29.93 15.98 -3.06 -0.05 -29.98 16 17 C -0.12 -4.90 5.64 29.85 0.17 -4.73 16 18 C 0.04 2.37 4.26 29.85 0.13 2.49 16 19 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 20 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 21 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 22 N -0.94 -60.10 13.29 21.45 0.28 -59.82 16 23 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 27 H 0.08 0.87 6.43 -2.39 -0.02 0.85 16 28 H 0.06 0.81 6.86 -2.39 -0.02 0.80 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.06 0.81 6.86 -2.39 -0.02 0.80 16 32 H 0.08 0.87 6.43 -2.39 -0.02 0.85 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.77 6.43 -2.39 -0.02 0.76 16 36 H 0.07 0.77 6.43 -2.38 -0.02 0.76 16 37 H 0.07 0.81 8.09 -2.38 -0.02 0.79 16 38 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 39 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.13 1.13 8.06 -2.91 -0.02 1.10 16 41 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 42 H 0.13 1.13 8.06 -2.91 -0.02 1.10 16 43 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.41 8.48 6.16 -92.70 -0.57 7.91 16 47 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 48 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 49 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 50 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 51 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -77.69 406.63 4.89 -72.80 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.31 Total: 16.70 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.62 Total: -24.48 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.01 Total: -81.64 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.05 Total: -29.98 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.69 4.89 -72.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360204227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.508 kcal (2) G-P(sol) polarization free energy of solvation -77.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds