Wall clock time and date at job start Tue Mar 31 2020 11:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38260 * 119.97196 * 2 1 4 4 C 1.38269 * 120.11140 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.97271 * 180.02562 * 4 3 2 6 6 C 1.38148 * 120.05528 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94234 * 0.02562 * 6 4 3 8 8 O 1.35900 * 120.05689 * 179.97438 * 7 6 4 9 9 C 1.42891 * 117.00277 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47411 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47550 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47221 * 174.86246 * 11 10 9 13 13 C 1.46900 * 110.99737 * 75.75188 * 12 11 10 14 14 C 1.50700 * 109.46762 * 189.99785 * 13 12 11 15 15 H 1.08001 * 120.00435 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00022 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99922 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00555 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46608 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47397 * 119.99335 * 18 16 14 21 21 H 1.48495 * 109.47045 * 239.99873 * 18 16 14 22 22 C 1.46901 * 110.99856 * 199.70476 * 12 11 10 23 23 C 1.53008 * 109.47093 * 75.55200 * 22 12 11 24 24 C 1.52998 * 117.49859 * 243.46486 * 23 22 12 25 25 C 1.52990 * 117.49862 * 174.84197 * 23 22 12 26 26 C 1.38145 * 119.96800 * 180.25343 * 2 1 3 27 27 H 1.09003 * 109.46741 * 89.99628 * 1 2 3 28 28 H 1.09001 * 109.47306 * 209.99606 * 1 2 3 29 29 H 1.08999 * 109.46907 * 330.00133 * 1 2 3 30 30 H 1.08003 * 119.94540 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47008 * 269.97911 * 5 4 3 32 32 H 1.08997 * 109.47500 * 29.97541 * 5 4 3 33 33 H 1.08998 * 109.47157 * 149.97495 * 5 4 3 34 34 H 1.07995 * 120.02985 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.47226 * 300.00094 * 9 8 7 36 36 H 1.08998 * 109.47228 * 60.00287 * 9 8 7 37 37 H 1.08998 * 109.47534 * 300.00330 * 10 9 8 38 38 H 1.09008 * 109.47142 * 60.00286 * 10 9 8 39 39 H 1.08995 * 109.47670 * 294.86719 * 11 10 9 40 40 H 1.09006 * 109.46800 * 54.86684 * 11 10 9 41 41 H 1.08994 * 109.47310 * 310.00365 * 13 12 11 42 42 H 1.09000 * 109.46741 * 70.00242 * 13 12 11 43 43 H 0.96990 * 120.00342 * 179.97438 * 17 16 14 44 44 H 1.09003 * 109.47216 * 195.55005 * 22 12 11 45 45 H 1.09000 * 109.47508 * 315.55546 * 22 12 11 46 46 H 1.08998 * 115.55023 * 29.17149 * 23 22 12 47 47 H 1.09006 * 117.49851 * 359.97438 * 24 23 22 48 48 H 1.08994 * 117.50267 * 145.01896 * 24 23 22 49 49 H 1.09002 * 117.50269 * 214.97996 * 25 23 22 50 50 H 1.09004 * 117.50243 * 359.97438 * 25 23 22 51 51 H 1.07996 * 120.03617 * 0.02853 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5804 1.2011 0.0005 5 6 4.3301 2.5083 0.0011 6 6 4.2752 0.0070 0.0016 7 6 3.5845 -1.1961 0.0016 8 8 4.2656 -2.3721 0.0021 9 6 3.4891 -3.5716 0.0027 10 6 4.4228 -4.7836 0.0039 11 6 3.5914 -6.0680 0.0051 12 7 4.4833 -7.2288 -0.1178 13 6 5.1698 -7.5019 1.1519 14 6 6.2480 -8.5308 0.9287 15 1 6.4077 -8.9405 -0.0578 16 6 7.0308 -8.9491 1.9838 17 7 6.8367 -8.4498 3.1850 18 14 8.3679 -10.2239 1.7072 19 1 8.3825 -10.6233 0.2769 20 1 9.6859 -9.6465 2.0738 21 1 8.0976 -11.4157 2.5507 22 6 3.7468 -8.4116 -0.5831 23 6 3.4615 -8.2783 -2.0805 24 6 1.9971 -8.1975 -2.5162 25 6 2.8057 -9.4685 -2.7833 26 6 2.1971 -1.1967 -0.0053 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6564 2.1323 -0.0004 31 1 4.5116 2.8235 -1.0264 32 1 3.7385 3.2663 0.5145 33 1 5.2825 2.3808 0.5157 34 1 5.3552 0.0101 0.0016 35 1 2.8603 -3.5970 0.8927 36 1 2.8604 -3.5978 -0.8873 37 1 5.0520 -4.7585 -0.8858 38 1 5.0513 -4.7573 0.8941 39 1 3.0311 -6.1374 0.9374 40 1 2.8975 -6.0524 -0.8355 41 1 5.6174 -6.5821 1.5281 42 1 4.4515 -7.8803 1.8792 43 1 7.3871 -8.7443 3.9273 44 1 4.3450 -9.3053 -0.4054 45 1 2.8053 -8.4905 -0.0396 46 1 4.1885 -7.6970 -2.6476 47 1 1.2369 -8.2397 -1.7361 48 1 1.7603 -7.5628 -3.3700 49 1 3.1009 -9.6701 -3.8131 50 1 2.5778 -10.3467 -2.1792 51 1 1.6572 -2.1321 -0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361445119.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:51 Heat of formation + Delta-G solvation = -7.306276 kcal Electronic energy + Delta-G solvation = -25804.460593 eV Core-core repulsion = 22283.057144 eV Total energy + Delta-G solvation = -3521.403449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.26106 -38.16046 -37.71604 -35.74713 -33.72315 -32.95067 -31.96616 -30.56392 -27.49003 -27.40045 -27.20826 -26.18849 -23.92750 -22.29057 -21.91490 -21.74375 -20.69337 -20.16757 -19.64548 -17.50011 -16.59044 -16.21414 -16.05388 -16.04260 -15.36056 -14.90420 -14.28303 -14.13828 -14.09327 -13.89986 -13.71387 -13.43794 -13.40595 -13.23025 -13.06198 -12.73746 -12.51944 -12.05468 -11.85971 -11.77258 -11.65611 -11.60287 -11.36901 -11.31518 -11.15045 -10.93666 -10.82814 -10.75506 -10.63744 -10.51159 -10.21801 -10.09973 -9.60196 -9.48695 -9.13882 -8.74975 -8.43359 -8.18501 -7.28447 -6.02653 -4.03654 1.19582 1.37308 3.21087 3.31262 3.38973 3.43824 3.61406 4.11772 4.42750 4.56634 4.61612 4.74619 4.93973 5.06286 5.10004 5.11590 5.15502 5.20616 5.23961 5.25563 5.33399 5.35009 5.40439 5.41064 5.44892 5.51510 5.61850 5.63863 5.67177 5.77171 5.81421 5.86772 5.91439 6.01549 6.07784 6.11255 6.25547 6.31282 6.31777 6.39163 6.44997 6.48910 6.52819 6.65901 6.76365 6.81323 7.28575 7.33697 7.48580 7.81504 8.09652 8.20203 8.54174 9.04677 9.60643 11.08252 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.002626 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.327282 B =10659.704237 C =12411.734387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.166 4.166 4 C -0.046 4.046 5 C -0.114 4.114 6 C -0.163 4.163 7 C 0.146 3.854 8 O -0.311 6.311 9 C 0.064 3.936 10 C -0.112 4.112 11 C 0.063 3.937 12 N -0.533 5.533 13 C 0.191 3.809 14 C -0.507 4.507 15 H 0.065 0.935 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.092 3.908 23 C -0.132 4.132 24 C -0.192 4.192 25 C -0.184 4.184 26 C -0.217 4.217 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.025 0.975 40 H 0.063 0.937 41 H 0.034 0.966 42 H -0.010 1.010 43 H 0.260 0.740 44 H 0.091 0.909 45 H 0.021 0.979 46 H 0.108 0.892 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.091 0.909 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.331 16.254 -8.362 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.184 4.184 4 C -0.047 4.047 5 C -0.170 4.170 6 C -0.181 4.181 7 C 0.099 3.901 8 O -0.224 6.224 9 C -0.012 4.012 10 C -0.150 4.150 11 C -0.066 4.066 12 N -0.257 5.257 13 C 0.066 3.934 14 C -0.545 4.545 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.212 1.212 22 C -0.037 4.037 23 C -0.150 4.150 24 C -0.229 4.229 25 C -0.221 4.221 26 C -0.236 4.236 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.007 0.993 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.039 0.961 46 H 0.127 0.873 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.107 0.893 50 H 0.109 0.891 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.689 16.298 -8.512 21.788 hybrid contribution -0.118 -1.007 0.618 1.187 sum -11.807 15.292 -7.893 20.870 Atomic orbital electron populations 1.20812 0.91149 1.02832 1.02391 1.19667 0.95858 0.92500 0.96524 1.20744 0.93404 0.97362 1.06936 1.19655 0.93601 0.94542 0.96858 1.20794 1.00051 0.93723 1.02455 1.20301 1.00300 0.89337 1.08195 1.19032 0.90446 0.86283 0.94292 1.86112 1.36113 1.12328 1.87829 1.22876 0.94709 0.82716 1.00853 1.21500 0.98261 0.90463 1.04742 1.21843 0.94293 0.91205 0.99288 1.61971 1.27154 1.02747 1.33854 1.19789 0.92845 0.97097 0.83669 1.21207 1.16061 1.22192 0.95054 0.91720 1.24990 0.97632 0.96898 0.95101 1.69967 1.40240 1.43601 0.99968 0.86470 0.81717 0.81154 0.78277 1.19626 1.21015 1.21173 1.21581 0.96078 0.95425 0.90583 1.22467 0.94345 1.00829 0.97387 1.23018 0.95399 1.01332 1.03186 1.22893 1.05292 0.92716 1.01243 1.21147 0.93075 0.98914 1.10468 0.91029 0.91461 0.91440 0.86243 0.90981 0.91442 0.91280 0.85270 0.92305 0.92288 0.90190 0.90375 0.95633 0.91890 0.94799 0.99266 0.92997 0.89038 0.96119 0.87342 0.89439 0.89562 0.89307 0.89089 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.05 -0.49 5.88 -104.65 -0.62 -1.10 16 3 C -0.17 -1.70 9.35 -39.56 -0.37 -2.07 16 4 C -0.05 -0.50 5.88 -104.64 -0.62 -1.11 16 5 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 6 C -0.16 -2.05 9.64 -39.43 -0.38 -2.43 16 7 C 0.15 2.02 6.69 -39.21 -0.26 1.76 16 8 O -0.31 -4.80 10.14 -19.43 -0.20 -4.99 16 9 C 0.06 0.89 4.74 37.16 0.18 1.07 16 10 C -0.11 -1.85 5.62 -26.73 -0.15 -2.00 16 11 C 0.06 1.08 4.81 -3.82 -0.02 1.06 16 12 N -0.53 -11.12 4.36 -236.07 -1.03 -12.15 16 13 C 0.19 4.88 4.55 -4.98 -0.02 4.85 16 14 C -0.51 -14.04 8.23 -34.44 -0.28 -14.32 16 15 H 0.06 1.78 7.31 -52.49 -0.38 1.40 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 18 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.09 1.73 5.07 -3.82 -0.02 1.71 16 23 C -0.13 -2.06 5.15 -90.62 -0.47 -2.52 16 24 C -0.19 -2.49 10.09 -26.73 -0.27 -2.76 16 25 C -0.18 -2.46 10.25 -26.74 -0.27 -2.73 16 26 C -0.22 -2.66 8.69 -39.43 -0.34 -3.01 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.06 0.77 7.68 -51.93 -0.40 0.38 16 36 H 0.06 0.73 7.65 -51.93 -0.40 0.33 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.48 6.95 -51.92 -0.36 1.12 16 39 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 40 H 0.06 0.96 7.22 -51.93 -0.37 0.59 16 41 H 0.03 0.93 6.72 -51.93 -0.35 0.58 16 42 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.09 1.94 6.58 -51.93 -0.34 1.60 16 45 H 0.02 0.38 7.73 -51.93 -0.40 -0.02 16 46 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 47 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 48 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 51 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 LS Contribution 410.80 15.07 6.19 6.19 Total: -1.00 -30.19 410.80 -11.82 -42.01 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -9.21 Total: 1.40 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -3.29 Total: -23.19 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.29 Total: -38.01 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.20 Total: -4.99 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.19 -11.82 -42.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361445119.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.702 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds