Wall clock time and date at job start Tue Mar 31 2020 11:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38260 * 119.97196 * 2 1 4 4 C 1.38269 * 120.11140 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.97271 * 180.02562 * 4 3 2 6 6 C 1.38148 * 120.05528 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94234 * 0.02562 * 6 4 3 8 8 O 1.35900 * 120.05689 * 179.97438 * 7 6 4 9 9 C 1.42891 * 117.00277 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47411 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47550 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47221 * 174.86246 * 11 10 9 13 13 C 1.46900 * 110.99737 * 75.75188 * 12 11 10 14 14 C 1.50700 * 109.46762 * 189.99785 * 13 12 11 15 15 H 1.08001 * 120.00435 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00022 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99922 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00555 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46608 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47397 * 119.99335 * 18 16 14 21 21 H 1.48495 * 109.47045 * 239.99873 * 18 16 14 22 22 C 1.46901 * 110.99856 * 199.70476 * 12 11 10 23 23 C 1.53008 * 109.47093 * 75.55200 * 22 12 11 24 24 C 1.52998 * 117.49859 * 243.46486 * 23 22 12 25 25 C 1.52990 * 117.49862 * 174.84197 * 23 22 12 26 26 C 1.38145 * 119.96800 * 180.25343 * 2 1 3 27 27 H 1.09003 * 109.46741 * 89.99628 * 1 2 3 28 28 H 1.09001 * 109.47306 * 209.99606 * 1 2 3 29 29 H 1.08999 * 109.46907 * 330.00133 * 1 2 3 30 30 H 1.08003 * 119.94540 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47008 * 269.97911 * 5 4 3 32 32 H 1.08997 * 109.47500 * 29.97541 * 5 4 3 33 33 H 1.08998 * 109.47157 * 149.97495 * 5 4 3 34 34 H 1.07995 * 120.02985 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.47226 * 300.00094 * 9 8 7 36 36 H 1.08998 * 109.47228 * 60.00287 * 9 8 7 37 37 H 1.08998 * 109.47534 * 300.00330 * 10 9 8 38 38 H 1.09008 * 109.47142 * 60.00286 * 10 9 8 39 39 H 1.08995 * 109.47670 * 294.86719 * 11 10 9 40 40 H 1.09006 * 109.46800 * 54.86684 * 11 10 9 41 41 H 1.08994 * 109.47310 * 310.00365 * 13 12 11 42 42 H 1.09000 * 109.46741 * 70.00242 * 13 12 11 43 43 H 0.96990 * 120.00342 * 179.97438 * 17 16 14 44 44 H 1.09003 * 109.47216 * 195.55005 * 22 12 11 45 45 H 1.09000 * 109.47508 * 315.55546 * 22 12 11 46 46 H 1.08998 * 115.55023 * 29.17149 * 23 22 12 47 47 H 1.09006 * 117.49851 * 359.97438 * 24 23 22 48 48 H 1.08994 * 117.50267 * 145.01896 * 24 23 22 49 49 H 1.09002 * 117.50269 * 214.97996 * 25 23 22 50 50 H 1.09004 * 117.50243 * 359.97438 * 25 23 22 51 51 H 1.07996 * 120.03617 * 0.02853 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5804 1.2011 0.0005 5 6 4.3301 2.5083 0.0011 6 6 4.2752 0.0070 0.0016 7 6 3.5845 -1.1961 0.0016 8 8 4.2656 -2.3721 0.0021 9 6 3.4891 -3.5716 0.0027 10 6 4.4228 -4.7836 0.0039 11 6 3.5914 -6.0680 0.0051 12 7 4.4833 -7.2288 -0.1178 13 6 5.1698 -7.5019 1.1519 14 6 6.2480 -8.5308 0.9287 15 1 6.4077 -8.9405 -0.0578 16 6 7.0308 -8.9491 1.9838 17 7 6.8367 -8.4498 3.1850 18 14 8.3679 -10.2239 1.7072 19 1 8.3825 -10.6233 0.2769 20 1 9.6859 -9.6465 2.0738 21 1 8.0976 -11.4157 2.5507 22 6 3.7468 -8.4116 -0.5831 23 6 3.4615 -8.2783 -2.0805 24 6 1.9971 -8.1975 -2.5162 25 6 2.8057 -9.4685 -2.7833 26 6 2.1971 -1.1967 -0.0053 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6564 2.1323 -0.0004 31 1 4.5116 2.8235 -1.0264 32 1 3.7385 3.2663 0.5145 33 1 5.2825 2.3808 0.5157 34 1 5.3552 0.0101 0.0016 35 1 2.8603 -3.5970 0.8927 36 1 2.8604 -3.5978 -0.8873 37 1 5.0520 -4.7585 -0.8858 38 1 5.0513 -4.7573 0.8941 39 1 3.0311 -6.1374 0.9374 40 1 2.8975 -6.0524 -0.8355 41 1 5.6174 -6.5821 1.5281 42 1 4.4515 -7.8803 1.8792 43 1 7.3871 -8.7443 3.9273 44 1 4.3450 -9.3053 -0.4054 45 1 2.8053 -8.4905 -0.0396 46 1 4.1885 -7.6970 -2.6476 47 1 1.2369 -8.2397 -1.7361 48 1 1.7603 -7.5628 -3.3700 49 1 3.1009 -9.6701 -3.8131 50 1 2.5778 -10.3467 -2.1792 51 1 1.6572 -2.1321 -0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361445119.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:51 Heat of formation + Delta-G solvation = -22.097047 kcal Electronic energy + Delta-G solvation = -25805.101969 eV Core-core repulsion = 22283.057144 eV Total energy + Delta-G solvation = -3522.044825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.21767 -39.48556 -38.81079 -37.13125 -34.89253 -34.45986 -33.46663 -31.55798 -29.40959 -28.26841 -28.06053 -27.39366 -25.61113 -23.67328 -23.10364 -22.68778 -21.94244 -21.27557 -21.07948 -18.69331 -18.43011 -17.32040 -17.25058 -16.91923 -16.76317 -16.59565 -15.74034 -15.48157 -15.30512 -15.03132 -14.75240 -14.58985 -14.33149 -14.20985 -14.01276 -13.93501 -13.59669 -13.46060 -13.33000 -13.00816 -12.84180 -12.73403 -12.63299 -12.54575 -12.42186 -12.31229 -12.26044 -12.15138 -12.02439 -11.79340 -11.66948 -11.42789 -11.28665 -11.03470 -10.70251 -10.57785 -9.58613 -9.11935 -9.03617 -8.21207 -6.30472 0.34012 0.47904 1.39059 1.40193 1.53594 2.13566 2.39665 2.74776 2.97187 3.11121 3.27364 3.77187 3.85509 3.87438 3.95749 4.08220 4.12148 4.13093 4.19294 4.22964 4.30340 4.38809 4.40394 4.47649 4.50340 4.55177 4.64745 4.67978 4.81392 4.81679 4.82818 4.85613 4.85895 4.91773 4.98890 5.05079 5.08759 5.11513 5.22376 5.24932 5.29722 5.31955 5.32843 5.38295 5.45515 5.56810 5.65798 5.66831 5.91021 6.06655 6.36298 6.47017 6.64807 6.86424 7.38987 8.90175 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.002626 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.327282 B =10659.704237 C =12411.734387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.167 4.167 4 C -0.049 4.049 5 C -0.112 4.112 6 C -0.185 4.185 7 C 0.117 3.883 8 O -0.336 6.336 9 C 0.074 3.926 10 C -0.103 4.103 11 C 0.067 3.933 12 N -0.540 5.540 13 C 0.208 3.792 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.278 1.278 22 C 0.096 3.904 23 C -0.154 4.154 24 C -0.169 4.169 25 C -0.175 4.175 26 C -0.229 4.229 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.021 0.979 40 H 0.093 0.907 41 H 0.007 0.993 42 H -0.041 1.041 43 H 0.264 0.736 44 H 0.061 0.939 45 H 0.024 0.976 46 H 0.101 0.899 47 H 0.092 0.908 48 H 0.108 0.892 49 H 0.106 0.894 50 H 0.091 0.909 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.119 17.171 -10.186 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.050 4.050 3 C -0.185 4.185 4 C -0.049 4.049 5 C -0.169 4.169 6 C -0.204 4.204 7 C 0.072 3.928 8 O -0.250 6.250 9 C -0.001 4.001 10 C -0.141 4.141 11 C -0.061 4.061 12 N -0.264 5.264 13 C 0.082 3.918 14 C -0.558 4.558 15 H 0.080 0.920 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.203 1.203 22 C -0.032 4.032 23 C -0.172 4.172 24 C -0.206 4.206 25 C -0.212 4.212 26 C -0.248 4.248 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.165 0.835 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.143 0.857 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.112 0.888 41 H 0.025 0.975 42 H -0.023 1.023 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.042 0.958 46 H 0.119 0.881 47 H 0.111 0.889 48 H 0.126 0.874 49 H 0.125 0.875 50 H 0.109 0.891 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.496 17.224 -10.356 24.208 hybrid contribution 0.382 -1.202 1.181 1.728 sum -13.114 16.022 -9.175 22.646 Atomic orbital electron populations 1.20871 0.88904 1.03804 1.03418 1.20082 0.97565 0.92069 0.95297 1.21139 0.93342 0.98402 1.05646 1.20037 0.94263 0.94973 0.95608 1.20859 1.00037 0.92520 1.03460 1.20510 1.00455 0.89988 1.09415 1.19327 0.91445 0.85854 0.96193 1.86048 1.37237 1.13163 1.88598 1.22726 0.93789 0.81403 1.02229 1.21345 0.98309 0.91857 1.02606 1.21878 0.94076 0.89884 1.00256 1.61910 1.28907 1.04637 1.30951 1.19398 0.92176 0.95106 0.85149 1.21490 1.16659 1.22621 0.95010 0.91956 1.25905 1.00051 0.99028 0.94737 1.70093 1.41473 1.45083 1.00899 0.85366 0.78452 0.78428 0.78596 1.18705 1.20526 1.20333 1.21512 0.95131 0.93331 0.93245 1.22191 0.96585 1.03684 0.94769 1.23101 0.93139 1.00827 1.03566 1.23001 1.04075 0.92403 1.01760 1.21322 0.92447 1.00106 1.10901 0.89829 0.91189 0.89835 0.83522 0.89816 0.89643 0.91228 0.85699 0.91666 0.89994 0.90991 0.93782 0.96074 0.88840 0.97531 1.02287 0.92753 0.92103 0.95822 0.88114 0.88906 0.87380 0.87518 0.89098 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.05 -0.98 5.88 -19.88 -0.12 -1.10 16 3 C -0.17 -3.06 9.35 22.28 0.21 -2.85 16 4 C -0.05 -0.98 5.88 -19.88 -0.12 -1.10 16 5 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 6 C -0.19 -4.76 9.64 22.37 0.22 -4.55 16 7 C 0.12 3.32 6.69 22.51 0.15 3.47 16 8 O -0.34 -10.83 10.14 -92.42 -0.94 -11.77 16 9 C 0.07 2.09 4.74 71.98 0.34 2.43 16 10 C -0.10 -3.59 5.62 30.59 0.17 -3.41 16 11 C 0.07 2.37 4.81 86.30 0.42 2.79 16 12 N -0.54 -23.39 4.36 -900.78 -3.93 -27.32 16 13 C 0.21 11.26 4.55 85.56 0.39 11.65 16 14 C -0.52 -29.92 8.23 25.60 0.21 -29.70 16 15 H 0.06 3.54 7.31 -2.91 -0.02 3.52 16 16 C 0.00 0.03 5.46 84.65 0.46 0.50 16 17 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 18 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 19 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 C 0.10 3.69 5.07 86.31 0.44 4.13 16 23 C -0.15 -4.63 5.15 -10.79 -0.06 -4.69 16 24 C -0.17 -3.88 10.09 30.59 0.31 -3.57 16 25 C -0.17 -4.27 10.25 30.59 0.31 -3.96 16 26 C -0.23 -5.47 8.69 22.37 0.19 -5.28 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.08 0.81 8.08 -2.39 -0.02 0.80 16 30 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 33 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 34 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.07 1.74 7.68 -2.38 -0.02 1.72 16 36 H 0.08 1.93 7.65 -2.39 -0.02 1.91 16 37 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 38 H 0.04 1.81 6.95 -2.38 -0.02 1.79 16 39 H 0.02 0.77 8.00 -2.39 -0.02 0.75 16 40 H 0.09 2.73 7.22 -2.38 -0.02 2.71 16 41 H 0.01 0.39 6.72 -2.39 -0.02 0.37 16 42 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 43 H 0.26 15.16 8.31 -92.72 -0.77 14.39 16 44 H 0.06 2.68 6.58 -2.39 -0.02 2.67 16 45 H 0.02 0.88 7.73 -2.39 -0.02 0.86 16 46 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 47 H 0.09 2.06 8.03 -2.38 -0.02 2.04 16 48 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 50 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 51 H 0.13 2.86 6.30 -2.91 -0.02 2.84 16 Total: -1.00 -68.47 410.80 3.28 -65.19 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.87 Total: 20.53 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 4.96 Total: -36.79 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -3.64 Total: -84.30 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.94 Total: -11.77 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -68.47 3.28 -65.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361445119.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.092 kcal (2) G-P(sol) polarization free energy of solvation -68.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds