Wall clock time and date at job start Tue Mar 31 2020 11:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86793 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46926 * 240.00189 * 3 2 1 5 5 H 1.48497 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47599 * 119.99979 * 3 2 1 7 7 C 1.39945 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99764 * 190.74462 * 7 2 1 9 9 C 1.41400 * 120.00100 * 10.75030 * 7 2 1 10 10 C 1.40717 * 120.24022 * 208.16525 * 9 7 2 11 11 C 1.37616 * 119.74146 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.25021 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.74752 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47420 * 96.05121 * 13 12 11 15 15 C 1.46894 * 111.00283 * 171.37948 * 14 13 12 16 16 C 1.53004 * 109.47019 * 285.82439 * 15 14 13 17 17 O 1.42901 * 109.46882 * 67.15884 * 16 15 14 18 18 C 1.46908 * 110.99379 * 295.32994 * 14 13 12 19 19 C 1.53002 * 109.46467 * 163.55933 * 18 14 13 20 20 C 1.53006 * 109.46471 * 177.54496 * 19 18 14 21 21 C 1.53002 * 109.46989 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47102 * 300.00218 * 21 20 19 23 23 C 1.52998 * 109.47585 * 59.99599 * 22 21 20 24 24 C 1.53000 * 109.47281 * 297.54096 * 19 18 14 25 25 C 1.38634 * 120.50051 * 0.25227 * 12 11 10 26 26 C 1.37620 * 120.24802 * 359.44707 * 25 12 11 27 27 H 0.96997 * 120.00170 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.12805 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.87357 * 179.97438 * 11 10 9 30 30 H 1.08997 * 109.47278 * 336.04364 * 13 12 11 31 31 H 1.09004 * 109.46744 * 216.04899 * 13 12 11 32 32 H 1.08997 * 109.47182 * 45.82695 * 15 14 13 33 33 H 1.08995 * 109.47205 * 165.82719 * 15 14 13 34 34 H 1.08998 * 109.47393 * 187.15539 * 16 15 14 35 35 H 1.08996 * 109.47207 * 307.16321 * 16 15 14 36 36 H 0.96695 * 114.00215 * 184.96938 * 17 16 15 37 37 H 1.08999 * 109.46892 * 43.56029 * 18 14 13 38 38 H 1.08995 * 109.47363 * 283.55924 * 18 14 13 39 39 H 1.08992 * 109.47224 * 57.55144 * 19 18 14 40 40 H 1.09002 * 109.47098 * 299.99598 * 20 19 18 41 41 H 1.08996 * 109.47502 * 60.00096 * 20 19 18 42 42 H 1.08995 * 109.47114 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.47293 * 59.99809 * 21 20 19 44 44 H 1.09005 * 109.47233 * 299.99907 * 22 21 20 45 45 H 1.09001 * 109.47345 * 180.02562 * 22 21 20 46 46 H 1.08999 * 109.47777 * 179.97438 * 23 22 21 47 47 H 1.09004 * 109.46811 * 60.00408 * 23 22 21 48 48 H 1.08996 * 109.47259 * 300.00250 * 24 19 18 49 49 H 1.09004 * 109.46918 * 60.00594 * 24 19 18 50 50 H 1.07993 * 119.87603 * 179.70898 * 25 12 11 51 51 H 1.07996 * 120.12935 * 180.27775 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6963 -1.2126 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2124 7 6 2.0079 -1.2120 0.0005 8 1 3.0737 -1.2201 0.1749 9 6 1.3194 -2.4259 -0.2273 10 6 1.8017 -3.6281 0.3224 11 6 1.1239 -4.8037 0.0937 12 6 -0.0296 -4.8066 -0.6754 13 6 -0.7626 -6.1005 -0.9192 14 7 -1.8552 -6.2351 0.0534 15 6 -2.7169 -7.3778 -0.2776 16 6 -3.5876 -7.0269 -1.4857 17 8 -2.7614 -6.8848 -2.6431 18 6 -1.3313 -6.3496 1.4211 19 6 -2.4558 -6.0777 2.4223 20 6 -1.9252 -6.2569 3.8462 21 6 -3.0498 -5.9856 4.8475 22 6 -3.5573 -4.5534 4.6687 23 6 -4.0878 -4.3741 3.2449 24 6 -2.9626 -4.6452 2.2435 25 6 -0.5106 -3.6290 -1.2267 26 6 0.1476 -2.4407 -1.0060 27 1 -0.4850 0.8400 -0.0004 28 1 2.7007 -3.6283 0.9209 29 1 1.4923 -5.7277 0.5143 30 1 -0.0717 -6.9361 -0.8075 31 1 -1.1729 -6.1009 -1.9290 32 1 -2.0978 -8.2430 -0.5149 33 1 -3.3551 -7.6106 0.5748 34 1 -4.3140 -7.8220 -1.6534 35 1 -4.1115 -6.0900 -1.2962 36 1 -3.2364 -6.5881 -3.4313 37 1 -0.5321 -5.6227 1.5660 38 1 -0.9407 -7.3551 1.5776 39 1 -3.2737 -6.7769 2.2488 40 1 -1.5642 -7.2775 3.9736 41 1 -1.1072 -5.5578 4.0198 42 1 -2.6720 -6.1137 5.8617 43 1 -3.8676 -6.6851 4.6737 44 1 -2.7396 -3.8538 4.8425 45 1 -4.3582 -4.3599 5.3823 46 1 -4.4498 -3.3539 3.1177 47 1 -4.9056 -5.0736 3.0712 48 1 -2.1447 -3.9461 2.4171 49 1 -3.3407 -4.5176 1.2291 50 1 -1.4074 -3.6436 -1.8281 51 1 -0.2313 -1.5238 -1.4327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362582221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:00 Heat of formation + Delta-G solvation = -57.221852 kcal Electronic energy + Delta-G solvation = -27809.933546 eV Core-core repulsion = 24286.365595 eV Total energy + Delta-G solvation = -3523.567951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.09445 -37.74992 -37.05815 -35.51731 -33.56682 -31.48744 -30.57835 -30.44531 -29.22973 -28.45239 -26.47501 -24.61125 -22.97183 -22.33448 -21.62087 -20.87276 -20.35227 -19.48147 -19.25906 -17.41239 -17.18725 -15.74531 -15.27301 -15.22277 -14.86147 -14.67499 -14.03139 -13.93599 -13.83283 -13.64264 -13.44445 -13.43912 -13.08013 -12.48831 -12.19220 -12.00555 -11.91242 -11.83197 -11.68993 -11.49980 -11.42571 -11.29590 -11.09728 -10.97738 -10.87339 -10.70213 -10.56219 -10.38683 -10.25740 -10.03049 -9.83343 -9.75458 -9.61983 -9.43928 -9.18812 -9.07652 -7.76824 -7.32554 -7.12502 -6.60966 -4.27480 2.84690 3.10885 3.14170 3.16396 3.25072 4.00467 4.30595 4.43033 4.79969 4.87040 4.97632 5.01350 5.25496 5.33832 5.40082 5.43605 5.53958 5.61956 5.68230 5.73884 5.77253 5.79680 5.84323 5.87316 5.89251 5.98647 6.11729 6.16198 6.17438 6.21189 6.28513 6.37444 6.41437 6.47008 6.50566 6.53236 6.59568 6.79145 6.83163 6.93757 7.06757 7.17359 7.40604 7.45286 7.60007 7.66489 7.73087 7.77799 7.99507 8.15871 8.28382 8.41283 8.75716 9.00193 9.08221 10.32362 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.004335 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.025323 B = 6456.772660 C = 7975.909593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.110 3.890 10 C -0.223 4.223 11 C -0.093 4.093 12 C -0.193 4.193 13 C 0.108 3.892 14 N -0.521 5.521 15 C 0.051 3.949 16 C 0.083 3.917 17 O -0.564 6.564 18 C 0.054 3.946 19 C -0.075 4.075 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.102 4.102 25 C -0.079 4.079 26 C -0.160 4.160 27 H 0.278 0.722 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.012 0.988 31 H 0.100 0.900 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.371 0.629 37 H 0.091 0.909 38 H 0.019 0.981 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.374 -10.784 2.951 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.497 4.497 8 H 0.091 0.909 9 C 0.108 3.892 10 C -0.242 4.242 11 C -0.112 4.112 12 C -0.194 4.194 13 C -0.018 4.018 14 N -0.245 5.245 15 C -0.078 4.078 16 C 0.004 3.996 17 O -0.369 6.369 18 C -0.074 4.074 19 C -0.094 4.094 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.139 4.139 25 C -0.098 4.098 26 C -0.179 4.179 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.117 0.883 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.218 0.782 37 H 0.109 0.891 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.404 -10.400 3.354 14.417 hybrid contribution 0.396 0.212 -0.103 0.461 sum -9.008 -10.189 3.251 13.983 Atomic orbital electron populations 1.69794 1.07304 1.28818 1.36959 1.25842 0.94790 1.00969 0.92566 0.86386 0.80021 0.80558 0.79781 1.19015 1.20439 1.19186 1.19522 0.95727 0.90654 1.43768 0.90885 1.17595 0.91618 0.91851 0.88169 1.20969 1.02735 0.93542 1.06995 1.20381 0.95856 0.96034 0.98937 1.18982 0.98592 0.93903 1.07970 1.21136 0.90062 0.93971 0.96596 1.62104 1.21264 1.39052 1.02108 1.22166 0.96558 0.92876 0.96168 1.22200 0.92289 0.99425 0.85638 1.86540 1.38784 1.90766 1.20855 1.22234 0.97618 0.99436 0.88119 1.21099 0.97254 0.97776 0.93273 1.21573 0.98174 1.00978 0.94680 1.21480 0.98219 0.96931 0.98552 1.21542 1.00354 0.96855 0.97017 1.21563 0.98338 1.00860 0.94860 1.21415 0.97766 0.95567 0.99202 1.20475 0.97644 0.92569 0.99120 1.21373 0.98596 0.96491 1.01476 0.91119 0.89405 0.90193 0.96952 0.88253 0.94879 0.90180 0.94245 0.92750 0.78162 0.89089 0.96247 0.92313 0.92717 0.91686 0.92578 0.92550 0.91916 0.92809 0.92403 0.92862 0.91794 0.90757 0.89591 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.13 10.80 55.55 0.60 -20.53 16 2 C 0.07 1.91 5.26 -17.34 -0.09 1.81 16 3 Si 0.91 19.14 29.57 -169.99 -5.03 14.11 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.47 -12.61 9.07 -37.74 -0.34 -12.95 16 8 H 0.07 1.91 7.87 -52.49 -0.41 1.49 16 9 C 0.11 2.97 5.56 -106.82 -0.59 2.37 16 10 C -0.22 -5.55 9.80 -38.87 -0.38 -5.93 16 11 C -0.09 -2.11 7.97 -39.66 -0.32 -2.42 16 12 C -0.19 -4.22 4.74 -104.33 -0.49 -4.71 16 13 C 0.11 2.01 4.86 -4.98 -0.02 1.98 16 14 N -0.52 -8.47 3.74 -236.07 -0.88 -9.36 16 15 C 0.05 0.68 5.36 -3.83 -0.02 0.66 16 16 C 0.08 0.98 7.35 37.16 0.27 1.25 16 17 O -0.56 -7.21 10.66 -35.23 -0.38 -7.59 16 18 C 0.05 0.86 4.24 -3.82 -0.02 0.84 16 19 C -0.08 -1.04 2.19 -90.62 -0.20 -1.24 16 20 C -0.12 -1.47 5.20 -26.73 -0.14 -1.61 16 21 C -0.11 -1.29 5.92 -26.73 -0.16 -1.44 16 22 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 23 C -0.12 -1.54 5.92 -26.71 -0.16 -1.70 16 24 C -0.10 -1.57 5.07 -26.70 -0.14 -1.71 16 25 C -0.08 -1.87 9.69 -39.66 -0.38 -2.25 16 26 C -0.16 -4.20 8.67 -38.87 -0.34 -4.53 16 27 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 28 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 29 H 0.08 1.64 8.04 -52.49 -0.42 1.22 16 30 H 0.01 0.23 8.03 -51.93 -0.42 -0.19 16 31 H 0.10 1.85 5.00 -51.93 -0.26 1.59 16 32 H 0.03 0.46 8.02 -51.93 -0.42 0.04 16 33 H 0.08 0.95 6.27 -51.93 -0.33 0.62 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.37 3.16 9.12 45.56 0.42 3.57 16 37 H 0.09 1.72 5.55 -51.93 -0.29 1.44 16 38 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 39 H 0.06 0.76 6.50 -51.93 -0.34 0.42 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.07 1.25 7.67 -51.93 -0.40 0.86 16 50 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 51 H 0.12 3.22 6.17 -52.49 -0.32 2.90 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -28.14 389.15 -11.73 -39.87 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.23 Total: 10.81 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: -3.68 Total: -33.19 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: -0.28 Total: -29.89 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.38 Total: -7.59 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.14 -11.73 -39.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362582221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.348 kcal (2) G-P(sol) polarization free energy of solvation -28.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds