Wall clock time and date at job start Tue Mar 31 2020 11:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86793 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46926 * 240.00189 * 3 2 1 5 5 H 1.48497 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47599 * 119.99979 * 3 2 1 7 7 C 1.39945 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99764 * 190.74462 * 7 2 1 9 9 C 1.41400 * 120.00100 * 10.75030 * 7 2 1 10 10 C 1.40717 * 120.24022 * 208.16525 * 9 7 2 11 11 C 1.37616 * 119.74146 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.25021 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.74752 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47420 * 96.05121 * 13 12 11 15 15 C 1.46894 * 111.00283 * 171.37948 * 14 13 12 16 16 C 1.53004 * 109.47019 * 285.82439 * 15 14 13 17 17 O 1.42901 * 109.46882 * 67.15884 * 16 15 14 18 18 C 1.46908 * 110.99379 * 295.32994 * 14 13 12 19 19 C 1.53002 * 109.46467 * 163.55933 * 18 14 13 20 20 C 1.53006 * 109.46471 * 177.54496 * 19 18 14 21 21 C 1.53002 * 109.46989 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47102 * 300.00218 * 21 20 19 23 23 C 1.52998 * 109.47585 * 59.99599 * 22 21 20 24 24 C 1.53000 * 109.47281 * 297.54096 * 19 18 14 25 25 C 1.38634 * 120.50051 * 0.25227 * 12 11 10 26 26 C 1.37620 * 120.24802 * 359.44707 * 25 12 11 27 27 H 0.96997 * 120.00170 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.12805 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.87357 * 179.97438 * 11 10 9 30 30 H 1.08997 * 109.47278 * 336.04364 * 13 12 11 31 31 H 1.09004 * 109.46744 * 216.04899 * 13 12 11 32 32 H 1.08997 * 109.47182 * 45.82695 * 15 14 13 33 33 H 1.08995 * 109.47205 * 165.82719 * 15 14 13 34 34 H 1.08998 * 109.47393 * 187.15539 * 16 15 14 35 35 H 1.08996 * 109.47207 * 307.16321 * 16 15 14 36 36 H 0.96695 * 114.00215 * 184.96938 * 17 16 15 37 37 H 1.08999 * 109.46892 * 43.56029 * 18 14 13 38 38 H 1.08995 * 109.47363 * 283.55924 * 18 14 13 39 39 H 1.08992 * 109.47224 * 57.55144 * 19 18 14 40 40 H 1.09002 * 109.47098 * 299.99598 * 20 19 18 41 41 H 1.08996 * 109.47502 * 60.00096 * 20 19 18 42 42 H 1.08995 * 109.47114 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.47293 * 59.99809 * 21 20 19 44 44 H 1.09005 * 109.47233 * 299.99907 * 22 21 20 45 45 H 1.09001 * 109.47345 * 180.02562 * 22 21 20 46 46 H 1.08999 * 109.47777 * 179.97438 * 23 22 21 47 47 H 1.09004 * 109.46811 * 60.00408 * 23 22 21 48 48 H 1.08996 * 109.47259 * 300.00250 * 24 19 18 49 49 H 1.09004 * 109.46918 * 60.00594 * 24 19 18 50 50 H 1.07993 * 119.87603 * 179.70898 * 25 12 11 51 51 H 1.07996 * 120.12935 * 180.27775 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6963 -1.2126 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2124 7 6 2.0079 -1.2120 0.0005 8 1 3.0737 -1.2201 0.1749 9 6 1.3194 -2.4259 -0.2273 10 6 1.8017 -3.6281 0.3224 11 6 1.1239 -4.8037 0.0937 12 6 -0.0296 -4.8066 -0.6754 13 6 -0.7626 -6.1005 -0.9192 14 7 -1.8552 -6.2351 0.0534 15 6 -2.7169 -7.3778 -0.2776 16 6 -3.5876 -7.0269 -1.4857 17 8 -2.7614 -6.8848 -2.6431 18 6 -1.3313 -6.3496 1.4211 19 6 -2.4558 -6.0777 2.4223 20 6 -1.9252 -6.2569 3.8462 21 6 -3.0498 -5.9856 4.8475 22 6 -3.5573 -4.5534 4.6687 23 6 -4.0878 -4.3741 3.2449 24 6 -2.9626 -4.6452 2.2435 25 6 -0.5106 -3.6290 -1.2267 26 6 0.1476 -2.4407 -1.0060 27 1 -0.4850 0.8400 -0.0004 28 1 2.7007 -3.6283 0.9209 29 1 1.4923 -5.7277 0.5143 30 1 -0.0717 -6.9361 -0.8075 31 1 -1.1729 -6.1009 -1.9290 32 1 -2.0978 -8.2430 -0.5149 33 1 -3.3551 -7.6106 0.5748 34 1 -4.3140 -7.8220 -1.6534 35 1 -4.1115 -6.0900 -1.2962 36 1 -3.2364 -6.5881 -3.4313 37 1 -0.5321 -5.6227 1.5660 38 1 -0.9407 -7.3551 1.5776 39 1 -3.2737 -6.7769 2.2488 40 1 -1.5642 -7.2775 3.9736 41 1 -1.1072 -5.5578 4.0198 42 1 -2.6720 -6.1137 5.8617 43 1 -3.8676 -6.6851 4.6737 44 1 -2.7396 -3.8538 4.8425 45 1 -4.3582 -4.3599 5.3823 46 1 -4.4498 -3.3539 3.1177 47 1 -4.9056 -5.0736 3.0712 48 1 -2.1447 -3.9461 2.4171 49 1 -3.3407 -4.5176 1.2291 50 1 -1.4074 -3.6436 -1.8281 51 1 -0.2313 -1.5238 -1.4327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362582221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:59 Heat of formation + Delta-G solvation = -72.039147 kcal Electronic energy + Delta-G solvation = -27810.576072 eV Core-core repulsion = 24286.365595 eV Total energy + Delta-G solvation = -3524.210477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.38762 -39.27451 -38.32594 -36.72242 -35.42476 -32.78004 -32.09714 -31.52278 -31.15281 -29.85027 -28.05239 -26.12086 -24.39805 -23.39690 -22.92945 -22.62675 -21.82365 -20.94626 -20.43070 -19.17073 -18.38200 -17.17858 -16.84186 -16.46182 -16.20722 -15.89291 -15.64467 -15.29638 -15.17589 -14.91755 -14.85254 -14.70530 -14.31960 -14.16179 -13.77498 -13.46428 -13.30321 -13.22248 -12.97070 -12.88558 -12.76302 -12.71005 -12.60881 -12.46696 -12.22428 -12.12761 -11.94743 -11.80377 -11.63515 -11.37658 -11.21203 -11.13869 -11.02351 -10.85974 -10.82173 -10.55793 -9.28631 -9.16865 -8.96655 -8.54044 -6.31545 1.00706 1.18423 1.37207 1.48884 1.52679 2.22604 2.74284 3.19129 3.53627 3.79284 3.82098 3.93486 3.98752 4.21805 4.25949 4.33704 4.36870 4.45413 4.48030 4.53748 4.57749 4.62759 4.65147 4.68157 4.71230 4.74653 4.81239 4.83847 4.90901 5.01320 5.05735 5.09065 5.11577 5.18397 5.22153 5.31308 5.33928 5.36226 5.40286 5.44074 5.50064 5.54146 5.60842 5.70360 5.76498 6.00110 6.14599 6.23319 6.40233 6.43789 6.44685 6.76317 6.99353 7.01687 7.09088 8.41274 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.004335 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.025323 B = 6456.772660 C = 7975.909593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.506 4.506 8 H 0.070 0.930 9 C 0.078 3.922 10 C -0.238 4.238 11 C -0.091 4.091 12 C -0.178 4.178 13 C 0.117 3.883 14 N -0.529 5.529 15 C 0.049 3.951 16 C 0.084 3.916 17 O -0.586 6.586 18 C 0.056 3.944 19 C -0.065 4.065 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.096 4.096 25 C -0.082 4.082 26 C -0.181 4.181 27 H 0.284 0.716 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.014 0.986 31 H 0.104 0.896 32 H 0.032 0.968 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.389 0.611 37 H 0.054 0.946 38 H 0.031 0.969 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.073 0.927 46 H 0.049 0.951 47 H 0.075 0.925 48 H 0.019 0.981 49 H 0.056 0.944 50 H 0.099 0.901 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 -12.679 3.586 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.536 4.536 8 H 0.088 0.912 9 C 0.076 3.924 10 C -0.258 4.258 11 C -0.110 4.110 12 C -0.180 4.180 13 C -0.010 4.010 14 N -0.253 5.253 15 C -0.079 4.079 16 C 0.006 3.994 17 O -0.395 6.395 18 C -0.072 4.072 19 C -0.084 4.084 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.158 4.158 23 C -0.152 4.152 24 C -0.133 4.133 25 C -0.101 4.101 26 C -0.200 4.200 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.032 0.968 31 H 0.122 0.878 32 H 0.050 0.950 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.239 0.761 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.038 0.962 49 H 0.074 0.926 50 H 0.117 0.883 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.056 -12.314 3.980 17.021 hybrid contribution 0.840 0.658 -0.326 1.116 sum -10.216 -11.656 3.654 15.924 Atomic orbital electron populations 1.69871 1.08767 1.30063 1.37464 1.26699 0.95599 1.04260 0.91490 0.85263 0.78689 0.75861 0.79909 1.18485 1.19180 1.18610 1.19772 0.95868 0.91924 1.46030 0.91160 1.17914 0.92461 0.92854 0.89174 1.21148 1.03306 0.93970 1.07372 1.20623 0.95717 0.96151 0.98489 1.19368 0.97970 0.94981 1.05631 1.21007 0.90593 0.91737 0.97619 1.62027 1.20458 1.41236 1.01605 1.22321 0.96316 0.91401 0.97826 1.22228 0.92148 1.00208 0.84813 1.86447 1.40140 1.90964 1.21955 1.22190 0.97532 0.98860 0.88655 1.21035 0.97064 0.96827 0.93472 1.21569 0.98178 1.01276 0.94312 1.21465 0.98079 0.96429 0.98681 1.21551 1.00321 0.97262 0.96689 1.21530 0.97842 1.01051 0.94776 1.21298 0.97163 0.95863 0.99010 1.20639 0.97828 0.92396 0.99247 1.21308 0.99342 0.96814 1.02572 0.90519 0.89103 0.87871 0.96796 0.87830 0.94983 0.88103 0.91164 0.93399 0.76083 0.92730 0.95061 0.90029 0.91080 0.94085 0.91291 0.90637 0.94002 0.90789 0.93194 0.90663 0.96208 0.92552 0.88295 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.86 10.80 21.83 0.24 -45.63 16 2 C 0.03 1.72 5.26 85.26 0.45 2.17 16 3 Si 0.98 40.16 29.57 68.60 2.03 42.19 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.51 -28.73 9.07 23.46 0.21 -28.51 16 8 H 0.07 3.86 7.87 -2.91 -0.02 3.84 16 9 C 0.08 4.44 5.56 -21.29 -0.12 4.32 16 10 C -0.24 -12.37 9.80 22.73 0.22 -12.15 16 11 C -0.09 -4.19 7.97 22.22 0.18 -4.01 16 12 C -0.18 -7.86 4.74 -19.68 -0.09 -7.95 16 13 C 0.12 4.22 4.86 85.56 0.42 4.63 16 14 N -0.53 -16.48 3.74 -900.79 -3.37 -19.86 16 15 C 0.05 1.17 5.36 86.31 0.46 1.63 16 16 C 0.08 1.74 7.35 71.98 0.53 2.26 16 17 O -0.59 -13.67 10.66 -148.98 -1.59 -15.26 16 18 C 0.06 1.72 4.24 86.30 0.37 2.08 16 19 C -0.07 -1.71 2.19 -10.79 -0.02 -1.73 16 20 C -0.12 -2.74 5.20 30.60 0.16 -2.58 16 21 C -0.11 -2.15 5.92 30.59 0.18 -1.97 16 22 C -0.12 -2.72 5.92 30.59 0.18 -2.54 16 23 C -0.11 -2.85 5.92 30.61 0.18 -2.66 16 24 C -0.10 -2.97 5.07 30.61 0.16 -2.82 16 25 C -0.08 -4.00 9.69 22.22 0.22 -3.78 16 26 C -0.18 -9.99 8.67 22.73 0.20 -9.80 16 27 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 28 H 0.09 4.52 8.06 -2.91 -0.02 4.49 16 29 H 0.10 4.20 8.04 -2.91 -0.02 4.18 16 30 H 0.01 0.50 8.03 -2.39 -0.02 0.48 16 31 H 0.10 3.72 5.00 -2.39 -0.01 3.71 16 32 H 0.03 0.79 8.02 -2.39 -0.02 0.77 16 33 H 0.10 1.98 6.27 -2.39 -0.01 1.96 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.39 5.79 9.12 -74.06 -0.68 5.11 16 37 H 0.05 2.09 5.55 -2.39 -0.01 2.08 16 38 H 0.03 0.89 8.05 -2.39 -0.02 0.87 16 39 H 0.08 1.81 6.50 -2.39 -0.02 1.80 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 48 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.06 1.92 7.67 -2.39 -0.02 1.90 16 50 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 51 H 0.10 5.77 6.17 -2.91 -0.02 5.75 16 Total: -1.00 -64.35 389.15 1.39 -62.95 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: 0.22 Total: 39.01 kcal Atomic # 6 Polarization: -67.28 SS G_CDS: 3.87 Total: -63.41 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -3.14 Total: -65.48 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -1.59 Total: -15.26 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -64.35 1.39 -62.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362582221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.088 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds