Wall clock time and date at job start Tue Mar 31 2020 11:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38289 * 119.87960 * 2 1 4 4 C 1.38393 * 120.06194 * 179.51360 * 3 2 1 5 5 C 1.38014 * 119.63522 * 0.36744 * 4 3 2 6 6 C 1.37953 * 120.56622 * 0.33678 * 5 4 3 7 7 C 1.38158 * 119.87787 * 179.72046 * 2 1 3 8 8 O 1.36115 * 120.39903 * 178.28553 * 6 5 4 9 9 C 1.43149 * 115.60811 * 289.55409 * 8 6 5 10 10 C 1.51432 * 110.91805 * 86.71964 * 9 8 6 11 11 C 1.52142 * 113.45951 * 294.59032 * 10 9 8 12 12 C 1.51665 * 120.02305 * 181.14139 * 5 4 3 13 13 H 1.09002 * 109.60464 * 7.57932 * 12 5 4 14 14 N 1.46902 * 109.60054 * 128.05161 * 12 5 4 15 15 C 1.46902 * 110.99472 * 274.99835 * 14 12 5 16 16 C 1.53007 * 109.46649 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47294 * 300.00382 * 16 15 14 18 18 C 1.53009 * 109.46745 * 60.00264 * 16 15 14 19 19 C 1.53002 * 109.46716 * 179.97438 * 16 15 14 20 20 C 1.50705 * 109.46931 * 180.02562 * 19 16 15 21 21 H 1.08006 * 119.99555 * 0.02562 * 20 19 16 22 22 C 1.37868 * 119.99991 * 180.02562 * 20 19 16 23 23 N 1.31513 * 120.00476 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99790 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46888 * 90.00410 * 24 22 20 26 26 H 1.48507 * 109.47189 * 210.00030 * 24 22 20 27 27 H 1.48490 * 109.47416 * 330.00072 * 24 22 20 28 28 H 1.09001 * 109.46953 * 89.99899 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99496 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00127 * 1 2 3 31 31 H 1.08000 * 119.96678 * 359.54197 * 3 2 1 32 32 H 1.07996 * 120.18295 * 180.38303 * 4 3 2 33 33 H 1.07993 * 120.16141 * 359.85993 * 7 2 1 34 34 H 1.08995 * 109.18574 * 326.35220 * 9 8 6 35 35 H 1.08996 * 109.18796 * 207.09196 * 9 8 6 36 36 H 1.09004 * 108.68637 * 173.56538 * 10 9 8 37 37 H 1.08996 * 108.68849 * 55.62141 * 10 9 8 38 38 H 1.09004 * 109.20922 * 307.23706 * 11 10 9 39 39 H 1.08997 * 109.17203 * 187.90118 * 11 10 9 40 40 H 1.00900 * 110.99530 * 38.94784 * 14 12 5 41 41 H 1.08999 * 109.47537 * 299.99621 * 15 14 12 42 42 H 1.09001 * 109.47317 * 60.00339 * 15 14 12 43 43 H 1.08996 * 109.47274 * 59.99683 * 17 16 15 44 44 H 1.09008 * 109.46682 * 180.02562 * 17 16 15 45 45 H 1.09005 * 109.46890 * 299.99543 * 17 16 15 46 46 H 1.09007 * 109.46815 * 59.99936 * 18 16 15 47 47 H 1.08997 * 109.46716 * 179.97438 * 18 16 15 48 48 H 1.08996 * 109.47072 * 299.99857 * 18 16 15 49 49 H 1.08999 * 109.47640 * 300.00314 * 19 16 15 50 50 H 1.08999 * 109.46710 * 60.00710 * 19 16 15 51 51 H 0.96996 * 120.00463 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1991 0.0000 4 6 3.5799 1.2035 0.0102 5 6 4.2662 0.0061 0.0126 6 6 3.5845 -1.1932 -0.0020 7 6 2.1953 -1.1979 0.0058 8 8 4.2648 -2.3717 -0.0347 9 6 4.9317 -2.6672 -1.2664 10 6 6.3157 -2.0532 -1.2927 11 6 6.3036 -0.5319 -1.2851 12 6 5.7823 0.0005 0.0499 13 1 6.1481 1.0153 0.2066 14 7 6.2453 -0.8674 1.1409 15 6 6.2806 -0.1375 2.4153 16 6 6.7659 -1.0723 3.5251 17 6 5.8104 -2.2611 3.6446 18 6 8.1700 -1.5783 3.1880 19 6 6.8034 -0.3118 4.8522 20 6 7.2819 -1.2323 5.9453 21 1 7.5345 -2.2572 5.7161 22 6 7.3973 -0.7663 7.2377 23 7 7.0893 0.4814 7.5168 24 14 7.9912 -1.9072 8.5924 25 1 9.4704 -1.8257 8.6951 26 1 7.3822 -1.5006 9.8844 27 1 7.5930 -3.3020 8.2749 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6535 2.1329 -0.0075 32 1 4.1198 2.1388 0.0164 33 1 1.6560 -2.1335 0.0127 34 1 4.3469 -2.2681 -2.0951 35 1 5.0171 -3.7482 -1.3772 36 1 6.8318 -2.3938 -2.1904 37 1 6.8693 -2.4024 -0.4212 38 1 5.6607 -0.1743 -2.0894 39 1 7.3172 -0.1650 -1.4463 40 1 5.6714 -1.6941 1.2136 41 1 6.9611 0.7097 2.3300 42 1 5.2803 0.2227 2.6556 43 1 5.7841 -2.8027 2.6991 44 1 6.1559 -2.9268 4.4357 45 1 4.8101 -1.9006 3.8848 46 1 8.8507 -0.7312 3.1028 47 1 8.5158 -2.2439 3.9788 48 1 8.1437 -2.1198 2.2424 49 1 7.4843 0.5350 4.7668 50 1 5.8033 0.0490 5.0925 51 1 7.1701 0.8092 8.4261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367906079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:47 Heat of formation + Delta-G solvation = -49.606499 kcal Electronic energy + Delta-G solvation = -28120.553871 eV Core-core repulsion = 24597.316146 eV Total energy + Delta-G solvation = -3523.237725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85561 -39.12417 -38.65541 -36.85032 -34.65973 -33.82857 -32.85922 -31.15766 -29.53015 -28.69894 -27.91906 -27.28086 -26.56871 -24.95915 -24.30076 -23.28015 -21.73966 -20.91113 -19.57023 -18.39175 -18.33679 -17.66093 -17.10210 -16.55917 -16.32410 -15.93302 -15.68510 -15.35461 -15.24537 -15.00385 -14.62461 -14.56086 -14.44279 -14.28093 -13.98423 -13.87811 -13.41134 -13.28380 -13.13469 -12.99192 -12.88951 -12.70867 -12.66700 -12.48493 -12.29269 -12.26085 -12.13844 -11.97308 -11.83311 -11.58957 -11.45058 -11.38217 -10.92972 -10.83545 -10.72410 -10.50836 -9.74463 -9.41431 -9.21707 -8.13921 -6.21324 0.23685 0.33275 1.40364 1.41354 1.52044 2.43720 2.45941 2.88641 3.19654 3.37631 3.66696 3.86961 3.99521 4.00226 4.10611 4.14618 4.16787 4.26950 4.31037 4.36778 4.38031 4.49223 4.56939 4.60745 4.74717 4.78483 4.80417 4.82436 4.90159 4.93219 4.94965 5.02884 5.06634 5.11625 5.17427 5.19318 5.20353 5.25025 5.37120 5.48109 5.48473 5.51325 5.52858 5.57031 5.58796 5.66240 5.83182 5.86269 5.91738 6.15614 6.37171 6.53561 6.62846 6.93205 7.45936 8.98629 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.003601 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.412694 B = 7772.949767 C = 8598.628538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.080 4.080 3 C -0.135 4.135 4 C -0.105 4.105 5 C -0.161 4.161 6 C 0.093 3.907 7 C -0.149 4.149 8 O -0.344 6.344 9 C 0.063 3.937 10 C -0.152 4.152 11 C -0.097 4.097 12 C 0.123 3.877 13 H 0.080 0.920 14 N -0.667 5.667 15 C 0.084 3.916 16 C -0.053 4.053 17 C -0.116 4.116 18 C -0.104 4.104 19 C 0.043 3.957 20 C -0.515 4.515 21 H 0.066 0.934 22 C -0.004 4.004 23 N -0.938 5.938 24 Si 0.957 3.043 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.263 1.263 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.354 0.646 41 H 0.057 0.943 42 H 0.002 0.998 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.026 0.974 46 H 0.033 0.967 47 H 0.039 0.961 48 H 0.066 0.934 49 H -0.015 1.015 50 H -0.022 1.022 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.433 -2.902 -23.443 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.123 4.123 5 C -0.163 4.163 6 C 0.049 3.951 7 C -0.168 4.168 8 O -0.261 6.261 9 C -0.011 4.011 10 C -0.190 4.190 11 C -0.135 4.135 12 C 0.012 3.988 13 H 0.098 0.902 14 N -0.303 5.303 15 C -0.045 4.045 16 C -0.054 4.054 17 C -0.173 4.173 18 C -0.161 4.161 19 C 0.005 3.995 20 C -0.553 4.553 21 H 0.084 0.916 22 C -0.201 4.201 23 N -0.580 5.580 24 Si 0.782 3.218 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.187 1.187 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.180 0.820 41 H 0.076 0.924 42 H 0.021 0.979 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.004 0.996 50 H -0.004 1.004 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.746 -2.870 -23.307 25.059 hybrid contribution -0.622 0.268 1.415 1.569 sum -9.369 -2.602 -21.892 23.955 Atomic orbital electron populations 1.20843 0.88881 1.03626 1.03430 1.20137 0.97695 0.92155 0.98011 1.21384 0.93982 0.98600 1.01321 1.21215 0.94801 0.97405 0.98893 1.21213 0.98362 0.93463 1.03260 1.18600 0.90751 0.85166 1.00545 1.21371 0.92689 0.99246 1.03462 1.86218 1.66980 1.35406 1.37459 1.22762 0.92568 1.01799 0.83956 1.21608 0.97475 0.95602 1.04272 1.21298 1.01754 0.96115 0.94342 1.20845 0.87138 0.97563 0.93230 0.90197 1.60923 1.57471 1.08861 1.03005 1.21799 0.97182 0.96119 0.89438 1.20475 0.96187 0.95104 0.93600 1.21618 0.97411 0.97743 1.00564 1.21477 0.94641 0.99818 1.00191 1.18975 0.93828 0.94402 0.92257 1.21610 1.42614 0.97799 0.93259 0.91610 1.25928 0.96090 0.96524 1.01510 1.70114 1.50718 1.16780 1.20345 0.85559 0.78516 0.79424 0.78257 1.19920 1.21171 1.18719 0.89585 0.91084 0.90501 0.83788 0.84638 0.84613 0.92163 0.86748 0.88828 0.90707 0.91462 0.90398 0.82034 0.92412 0.97943 0.92166 0.93225 0.95524 0.94775 0.94155 0.91476 0.99623 1.00351 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.24 0.71 -0.88 16 2 C -0.08 -1.66 5.88 -19.87 -0.12 -1.78 16 3 C -0.13 -2.84 9.70 22.32 0.22 -2.63 16 4 C -0.10 -2.47 9.70 22.25 0.22 -2.26 16 5 C -0.16 -4.18 4.58 -19.68 -0.09 -4.27 16 6 C 0.09 2.44 5.29 22.37 0.12 2.56 16 7 C -0.15 -3.54 9.65 22.42 0.22 -3.33 16 8 O -0.34 -8.83 8.00 -94.85 -0.76 -9.59 16 9 C 0.06 1.16 6.49 71.47 0.46 1.62 16 10 C -0.15 -2.79 5.27 29.80 0.16 -2.64 16 11 C -0.10 -1.94 5.55 30.27 0.17 -1.77 16 12 C 0.12 3.16 2.69 44.44 0.12 3.28 16 13 H 0.08 2.09 7.61 -2.39 -0.02 2.07 16 14 N -0.67 -20.46 4.15 -494.03 -2.05 -22.51 16 15 C 0.08 3.19 4.45 86.31 0.38 3.58 16 16 C -0.05 -2.28 0.60 -52.18 -0.03 -2.32 16 17 C -0.12 -4.74 7.89 71.98 0.57 -4.17 16 18 C -0.10 -4.14 8.06 71.99 0.58 -3.56 16 19 C 0.04 2.34 4.04 29.85 0.12 2.46 16 20 C -0.51 -29.50 7.65 25.60 0.20 -29.31 16 21 H 0.07 3.62 5.68 -2.91 -0.02 3.60 16 22 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 23 N -0.94 -58.72 13.29 21.44 0.28 -58.44 16 24 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 31 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.14 2.79 7.98 -2.91 -0.02 2.77 16 33 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.06 1.00 7.90 -2.39 -0.02 0.98 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.69 6.80 -2.39 -0.02 1.68 16 38 H 0.07 1.21 7.89 -2.39 -0.02 1.19 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.35 11.21 3.32 -89.69 -0.30 10.91 16 41 H 0.06 2.23 8.06 -2.39 -0.02 2.21 16 42 H 0.00 0.10 8.01 -2.39 -0.02 0.08 16 43 H 0.06 2.14 6.57 -2.39 -0.02 2.13 16 44 H 0.05 2.13 6.62 -2.38 -0.02 2.12 16 45 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.04 1.69 6.61 -2.39 -0.02 1.68 16 48 H 0.07 2.32 7.60 -2.39 -0.02 2.30 16 49 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 50 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 51 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -67.79 385.64 4.56 -63.23 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.60 Total: 24.99 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 4.46 Total: -45.17 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.77 Total: -80.95 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.76 Total: -9.59 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -67.79 4.56 -63.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367906079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.628 kcal (2) G-P(sol) polarization free energy of solvation -67.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds