Wall clock time and date at job start Tue Mar 31 2020 11:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00283 * 2 1 4 4 H 1.48502 * 109.47413 * 240.00002 * 3 2 1 5 5 H 1.48500 * 109.47507 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47214 * 119.99784 * 3 2 1 7 7 C 1.37874 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00274 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.52365 * 59.92019 * 9 7 2 11 11 C 1.53043 * 109.49597 * 299.83966 * 9 7 2 12 12 C 1.53040 * 109.53589 * 178.68020 * 11 9 7 13 13 C 1.53191 * 109.31519 * 61.36635 * 12 11 9 14 14 N 1.46954 * 108.88685 * 305.44426 * 13 12 11 15 15 C 1.34782 * 120.64936 * 233.52964 * 14 13 12 16 16 O 1.21289 * 119.99704 * 174.39496 * 15 14 13 17 17 C 1.50690 * 120.00415 * 354.39265 * 15 14 13 18 18 C 1.53004 * 109.46985 * 295.30942 * 17 15 14 19 19 C 1.52999 * 109.47092 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47237 * 60.00158 * 19 18 17 21 21 C 1.52998 * 109.47467 * 59.99923 * 20 19 18 22 22 C 1.53007 * 109.46763 * 300.00300 * 21 20 19 23 23 C 1.52994 * 109.47260 * 60.00157 * 22 21 20 24 24 C 1.53000 * 109.46866 * 299.99481 * 22 21 20 25 25 C 1.52998 * 109.47006 * 60.00668 * 24 22 21 26 26 C 1.52997 * 109.46734 * 299.99738 * 20 19 18 27 27 C 1.46927 * 118.72034 * 53.35310 * 14 13 12 28 28 H 0.97009 * 119.99787 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46141 * 298.70123 * 11 9 7 30 30 H 1.08997 * 109.46117 * 58.66315 * 11 9 7 31 31 H 1.09008 * 109.49786 * 181.31650 * 12 11 9 32 32 H 1.09004 * 109.50229 * 301.37757 * 12 11 9 33 33 H 1.09003 * 109.58405 * 65.14863 * 13 12 11 34 34 H 1.08999 * 109.58780 * 185.43321 * 13 12 11 35 35 H 1.08998 * 109.47298 * 55.30270 * 17 15 14 36 36 H 1.09002 * 109.47174 * 59.99527 * 18 17 15 37 37 H 1.08998 * 109.47287 * 299.99387 * 19 18 17 38 38 H 1.09006 * 109.46977 * 180.02562 * 19 18 17 39 39 H 1.08997 * 109.46879 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.47546 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46989 * 59.99406 * 21 20 19 42 42 H 1.09004 * 109.46540 * 179.97438 * 22 21 20 43 43 H 1.08996 * 109.48009 * 59.99548 * 23 22 21 44 44 H 1.09002 * 109.47446 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.47161 * 300.00201 * 24 22 21 46 46 H 1.09006 * 109.46519 * 179.97438 * 24 22 21 47 47 H 1.09000 * 109.47393 * 179.97438 * 25 24 22 48 48 H 1.09002 * 109.47452 * 299.99842 * 26 20 19 49 49 H 1.09001 * 109.46640 * 179.97438 * 26 20 19 50 50 H 1.08998 * 109.58664 * 186.78671 * 27 14 13 51 51 H 1.09000 * 109.58543 * 66.49936 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6225 -2.5570 -0.8893 11 6 0.3744 -2.5828 1.2512 12 6 -0.4161 -3.8932 1.2357 13 6 0.5599 -5.0739 1.2491 14 7 1.5026 -4.9245 0.1318 15 6 1.6796 -5.9229 -0.7561 16 8 2.3823 -5.7512 -1.7297 17 6 1.0045 -7.2526 -0.5393 18 6 1.5589 -7.9053 0.7287 19 6 0.8730 -9.2550 0.9492 20 6 1.1402 -10.1650 -0.2514 21 6 2.6475 -10.3779 -0.4046 22 6 3.3333 -9.0281 -0.6251 23 6 3.0663 -8.1182 0.5755 24 6 2.7790 -8.3756 -1.8931 25 6 1.2717 -8.1626 -1.7398 26 6 0.5858 -9.5124 -1.5192 27 6 2.2458 -3.6640 -0.0011 28 1 -0.4850 0.8401 -0.0004 29 1 1.0055 -2.5499 2.1393 30 1 -0.3181 -1.7412 1.2666 31 1 -1.0576 -3.9415 2.1157 32 1 -1.0293 -3.9376 0.3356 33 1 1.1101 -5.0824 2.1900 34 1 0.0064 -6.0067 1.1410 35 1 -0.0694 -7.1014 -0.4302 36 1 1.3682 -7.2571 1.5841 37 1 -0.2008 -9.1034 1.0584 38 1 1.2676 -9.7197 1.8528 39 1 0.6519 -11.1267 -0.0940 40 1 2.8378 -11.0259 -1.2601 41 1 3.0424 -10.8428 0.4988 42 1 4.4073 -9.1798 -0.7338 43 1 3.4611 -8.5830 1.4788 44 1 3.5545 -7.1564 0.4182 45 1 2.9693 -9.0239 -2.7484 46 1 3.2673 -7.4137 -2.0499 47 1 0.8767 -7.6973 -2.6430 48 1 -0.4881 -9.3607 -1.4101 49 1 0.7765 -10.1605 -2.3746 50 1 2.8050 -3.6665 -0.9368 51 1 2.9352 -3.5563 0.8363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397651712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:11 Heat of formation + Delta-G solvation = -70.059622 kcal Electronic energy + Delta-G solvation = -29109.868086 eV Core-core repulsion = 25585.743447 eV Total energy + Delta-G solvation = -3524.124639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82402 -39.01662 -36.71100 -33.78267 -32.65437 -32.62181 -32.43129 -31.22512 -30.10433 -26.75936 -25.85551 -25.07015 -24.26603 -21.86019 -21.79831 -21.40878 -21.31254 -19.82995 -18.42817 -17.41841 -16.61290 -16.13823 -15.33363 -15.13532 -14.97124 -14.59158 -14.41398 -13.88936 -13.74327 -13.50471 -13.41909 -13.33694 -13.11855 -12.77309 -12.68040 -12.61815 -12.46666 -12.39845 -11.97853 -11.89072 -11.25816 -10.99479 -10.92678 -10.91911 -10.87755 -10.83236 -10.72715 -10.61090 -10.27969 -10.01102 -9.92166 -9.77892 -9.65737 -9.64481 -9.41022 -8.93222 -8.74452 -8.37398 -7.83560 -6.01325 -4.08434 3.10863 3.31575 3.35965 3.38657 3.58869 4.42430 4.43591 4.48737 4.49556 4.96541 5.04072 5.06974 5.12021 5.18658 5.23745 5.28062 5.29968 5.34417 5.35053 5.39780 5.52163 5.62557 5.66164 5.71241 5.74727 5.81706 5.84583 5.93161 5.96911 6.00330 6.02150 6.02795 6.09686 6.14126 6.29574 6.34069 6.40776 6.42532 6.49788 6.50176 6.51881 6.64979 6.75018 6.83619 7.03022 7.19081 7.34968 7.69437 7.93697 8.07266 8.09056 8.38729 8.73997 8.95245 9.56364 11.04153 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027688 B = 0.003488 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.040837 B = 8025.404510 C = 8371.602884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.109 3.891 14 N -0.602 5.602 15 C 0.517 3.483 16 O -0.546 6.546 17 C -0.096 4.096 18 C -0.079 4.079 19 C -0.106 4.106 20 C -0.086 4.086 21 C -0.106 4.106 22 C -0.085 4.085 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.062 4.062 26 C -0.108 4.108 27 C 0.117 3.883 28 H 0.261 0.739 29 H 0.035 0.965 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.099 0.901 47 H 0.073 0.927 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.078 0.922 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 -20.673 2.969 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.014 4.014 14 N -0.334 5.334 15 C 0.305 3.695 16 O -0.425 6.425 17 C -0.117 4.117 18 C -0.098 4.098 19 C -0.143 4.143 20 C -0.104 4.104 21 C -0.144 4.144 22 C -0.103 4.103 23 C -0.146 4.146 24 C -0.160 4.160 25 C -0.081 4.081 26 C -0.146 4.146 27 C -0.004 4.004 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.117 0.883 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.096 0.904 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.292 -20.439 2.465 20.590 hybrid contribution 0.272 1.012 0.153 1.059 sum 0.563 -19.428 2.618 19.611 Atomic orbital electron populations 1.69866 1.05893 1.26549 1.50484 1.24929 0.94849 0.99045 0.94945 0.86648 0.79599 0.83035 0.78665 1.20225 1.21319 1.20273 1.21046 0.92932 0.90354 1.50981 0.92590 1.18950 0.92962 0.91182 0.94724 0.95327 1.21620 0.99422 0.95338 0.98579 1.22015 0.97681 0.96796 1.00893 1.21806 0.91385 0.98975 0.89265 1.48279 1.42043 1.15916 1.27142 1.20432 0.81509 0.85277 0.82279 1.90553 1.40671 1.82231 1.29019 1.21290 1.00532 0.92834 0.97058 1.21125 0.95711 0.96578 0.96395 1.21536 1.00127 0.94964 0.97695 1.21046 0.96044 0.98145 0.95189 1.21544 0.94929 0.96893 1.01030 1.21038 0.99057 0.94621 0.95613 1.21533 0.95244 0.99988 0.97826 1.21851 0.95313 1.02797 0.96029 1.20774 0.96633 0.94013 0.96713 1.21573 0.99309 0.96310 0.97377 1.21955 0.95063 0.82103 1.01276 0.92946 0.94649 0.88727 0.92539 0.92438 0.92142 0.90941 0.89281 0.90316 0.91883 0.91800 0.91542 0.92276 0.92404 0.91673 0.92109 0.91799 0.92853 0.88267 0.90895 0.92126 0.91899 0.90395 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.98 8.56 -34.44 -0.29 -14.27 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.63 16 12 C -0.14 -2.40 6.08 -26.61 -0.16 -2.56 16 13 C 0.11 1.67 4.89 -3.70 -0.02 1.65 16 14 N -0.60 -10.96 2.98 -172.75 -0.51 -11.47 16 15 C 0.52 9.10 5.56 -10.99 -0.06 9.03 16 16 O -0.55 -11.32 12.92 5.55 0.07 -11.24 16 17 C -0.10 -1.28 1.43 -91.78 -0.13 -1.41 16 18 C -0.08 -0.90 2.37 -90.61 -0.21 -1.12 16 19 C -0.11 -0.98 5.19 -26.73 -0.14 -1.12 16 20 C -0.09 -0.78 3.19 -90.62 -0.29 -1.07 16 21 C -0.11 -1.00 5.19 -26.73 -0.14 -1.14 16 22 C -0.08 -0.97 3.19 -90.62 -0.29 -1.26 16 23 C -0.11 -1.30 4.97 -26.73 -0.13 -1.43 16 24 C -0.12 -1.62 4.90 -26.73 -0.13 -1.75 16 25 C -0.06 -0.80 2.39 -90.62 -0.22 -1.01 16 26 C -0.11 -1.08 5.19 -26.73 -0.14 -1.22 16 27 C 0.12 2.53 5.66 -3.71 -0.02 2.51 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 2.41 6.05 -51.93 -0.31 2.09 16 31 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 34 H 0.07 0.91 5.02 -51.93 -0.26 0.65 16 35 H 0.09 1.12 7.20 -51.93 -0.37 0.75 16 36 H 0.08 0.89 5.79 -51.93 -0.30 0.59 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.92 7.22 -51.93 -0.37 0.55 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.10 1.63 5.34 -51.93 -0.28 1.35 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 1.82 7.00 -51.93 -0.36 1.45 16 51 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -28.88 357.44 -11.25 -40.13 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.99 Total: 1.79 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.81 Total: -16.34 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.11 Total: -35.87 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.88 -11.25 -40.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397651712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.926 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds