Wall clock time and date at job start Tue Mar 31 2020 11:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48507 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46997 * 299.99128 * 3 2 1 6 6 H 1.48499 * 109.47489 * 59.99345 * 3 2 1 7 7 C 1.37879 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00230 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52845 * 300.08276 * 9 7 2 11 11 C 1.53042 * 109.49469 * 60.16112 * 9 7 2 12 12 C 1.53041 * 109.53919 * 181.31329 * 11 9 7 13 13 C 1.53618 * 109.24485 * 298.51598 * 12 11 9 14 14 N 1.46921 * 108.54693 * 54.85141 * 13 12 11 15 15 C 1.34777 * 120.63332 * 126.36892 * 14 13 12 16 16 O 1.21285 * 120.00094 * 185.15659 * 15 14 13 17 17 C 1.50695 * 119.99761 * 5.15447 * 15 14 13 18 18 C 1.53005 * 109.47074 * 64.95845 * 17 15 14 19 19 C 1.52997 * 109.46938 * 59.99906 * 18 17 15 20 20 C 1.52998 * 109.47337 * 60.00439 * 19 18 17 21 21 C 1.53002 * 109.47537 * 59.99709 * 20 19 18 22 22 C 1.52999 * 109.46881 * 300.00119 * 21 20 19 23 23 C 1.53002 * 109.47128 * 179.97438 * 18 17 15 24 24 C 1.52995 * 109.47366 * 299.99998 * 22 21 20 25 25 C 1.53003 * 109.47120 * 184.95761 * 17 15 14 26 26 C 1.52999 * 109.47001 * 299.99962 * 25 17 15 27 27 C 1.46929 * 118.73699 * 306.09935 * 14 13 12 28 28 H 0.97004 * 120.00104 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46283 * 301.33751 * 11 9 7 30 30 H 1.09005 * 109.46104 * 61.29730 * 11 9 7 31 31 H 1.09007 * 109.49568 * 58.58783 * 12 11 9 32 32 H 1.09005 * 109.50093 * 178.68036 * 12 11 9 33 33 H 1.09005 * 109.73611 * 295.11470 * 13 12 11 34 34 H 1.08998 * 109.66652 * 174.54956 * 13 12 11 35 35 H 1.09000 * 109.47599 * 304.95741 * 17 15 14 36 36 H 1.08992 * 109.47270 * 299.99665 * 18 17 15 37 37 H 1.09000 * 109.47244 * 299.99882 * 19 18 17 38 38 H 1.09006 * 109.46908 * 179.97438 * 19 18 17 39 39 H 1.09000 * 109.46999 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.46735 * 59.99742 * 21 20 19 41 41 H 1.08992 * 109.47015 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47081 * 179.97438 * 22 21 20 43 43 H 1.08995 * 109.47259 * 179.97438 * 23 18 17 44 44 H 1.09009 * 109.47164 * 60.00214 * 23 18 17 45 45 H 1.08997 * 109.47640 * 179.97438 * 24 22 21 46 46 H 1.08997 * 109.47127 * 299.99757 * 24 22 21 47 47 H 1.08995 * 109.47650 * 60.00218 * 25 17 15 48 48 H 1.09005 * 109.47163 * 180.02562 * 26 25 17 49 49 H 1.09000 * 109.47081 * 59.99993 * 26 25 17 50 50 H 1.09009 * 109.58780 * 173.64482 * 27 14 13 51 51 H 1.09000 * 109.58668 * 294.06528 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6225 -2.5570 0.8892 11 6 0.3745 -2.5828 -1.2512 12 6 -0.4159 -3.8932 -1.2359 13 6 0.5642 -5.0760 -1.2524 14 7 1.5001 -4.9231 -0.1302 15 6 1.6752 -5.9209 0.7587 16 8 2.3784 -5.7495 1.7320 17 6 0.9973 -7.2494 0.5434 18 6 1.5548 -7.9076 -0.7203 19 6 3.0611 -8.1235 -0.5607 20 6 3.3216 -9.0302 0.6438 21 6 2.6334 -10.3791 0.4252 22 6 1.1271 -10.1631 0.2657 23 6 0.8670 -9.2567 -0.9386 24 6 0.5696 -9.5050 1.5294 25 6 1.2578 -8.1560 1.7480 26 6 2.7641 -8.3720 1.9075 27 6 2.2459 -3.6640 0.0011 28 1 -0.4850 0.8401 -0.0004 29 1 -0.3180 -1.7412 -1.2666 30 1 1.0056 -2.5499 -2.1394 31 1 -1.0287 -3.9380 -0.3355 32 1 -1.0575 -3.9415 -2.1159 33 1 1.1176 -5.0823 -2.1915 34 1 0.0134 -6.0103 -1.1443 35 1 -0.0758 -7.0956 0.4298 36 1 1.3692 -7.2618 -1.5784 37 1 3.5514 -7.1625 -0.4050 38 1 3.4582 -8.5928 -1.4609 39 1 4.3947 -9.1836 0.7577 40 1 3.0305 -10.8478 -0.4751 41 1 2.8186 -11.0247 1.2835 42 1 0.6368 -11.1240 0.1096 43 1 1.2638 -9.7254 -1.8390 44 1 -0.2062 -9.1033 -1.0521 45 1 -0.5034 -9.3507 1.4156 46 1 0.7552 -10.1509 2.3875 47 1 0.8607 -7.6873 2.6483 48 1 2.9497 -9.0183 2.7654 49 1 3.2544 -7.4110 2.0632 50 1 2.8051 -3.6664 0.9368 51 1 2.9337 -3.5576 -0.8377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397651720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:13 Heat of formation + Delta-G solvation = -84.096433 kcal Electronic energy + Delta-G solvation = -29111.645338 eV Core-core repulsion = 25586.912018 eV Total energy + Delta-G solvation = -3524.733321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.83105 -40.39283 -38.29006 -35.50831 -33.92762 -33.52622 -33.32637 -32.78318 -31.81607 -27.93580 -26.93420 -26.70307 -25.71645 -23.43831 -22.83570 -22.34697 -22.26129 -21.35207 -19.87762 -18.63885 -18.29498 -17.70659 -16.77941 -16.45682 -16.27526 -16.01011 -15.30276 -15.14128 -14.97853 -14.92234 -14.65384 -14.55091 -14.25841 -14.07955 -14.03531 -13.72894 -13.71182 -13.49192 -13.25680 -13.23847 -12.90401 -12.70041 -12.57038 -12.16460 -11.98587 -11.86077 -11.76256 -11.71168 -11.65860 -11.59662 -11.58284 -11.25704 -11.01220 -10.79660 -10.54297 -10.51067 -10.46289 -10.08005 -9.42342 -8.12425 -6.27786 1.37844 1.40022 1.51440 1.73057 2.15800 2.42656 3.13879 3.48082 3.55301 3.62122 3.91122 4.05180 4.17050 4.21852 4.22443 4.25622 4.34253 4.36132 4.38932 4.45245 4.48917 4.50195 4.55301 4.60609 4.64737 4.78396 4.82747 4.86188 4.88620 4.92016 4.96098 5.00007 5.11709 5.12228 5.15786 5.18313 5.24888 5.25450 5.27375 5.29246 5.40500 5.48603 5.55136 5.58364 5.59875 5.64688 5.65251 5.74481 5.92035 6.12729 6.33311 6.64084 6.82091 7.32666 7.40510 8.91387 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.003488 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.816405 B = 8024.599864 C = 8370.312025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.042 3.958 10 H -0.017 1.017 11 C -0.104 4.104 12 C -0.128 4.128 13 C 0.110 3.890 14 N -0.608 5.608 15 C 0.509 3.491 16 O -0.587 6.587 17 C -0.088 4.088 18 C -0.077 4.077 19 C -0.109 4.109 20 C -0.084 4.084 21 C -0.102 4.102 22 C -0.084 4.084 23 C -0.101 4.101 24 C -0.103 4.103 25 C -0.065 4.065 26 C -0.123 4.123 27 C 0.132 3.868 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.047 0.953 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.048 0.952 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.916 -23.620 -5.249 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.209 1.209 7 C -0.577 4.577 8 H 0.069 0.931 9 C 0.023 3.977 10 H 0.001 0.999 11 C -0.142 4.142 12 C -0.166 4.166 13 C -0.011 4.011 14 N -0.339 5.339 15 C 0.299 3.701 16 O -0.468 6.468 17 C -0.109 4.109 18 C -0.095 4.095 19 C -0.146 4.146 20 C -0.103 4.103 21 C -0.139 4.139 22 C -0.102 4.102 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.084 4.084 26 C -0.161 4.161 27 C 0.009 3.991 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.045 0.955 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.067 0.933 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.699 -23.409 -4.758 23.898 hybrid contribution 0.614 1.984 0.665 2.181 sum -0.085 -21.425 -4.093 21.813 Atomic orbital electron populations 1.70018 1.07087 1.27143 1.50963 1.25690 0.95702 1.02270 0.94541 0.85551 0.79004 0.79633 0.77737 1.19384 1.19971 1.20869 1.21472 0.93000 0.92008 1.51179 0.93141 1.18860 0.93146 0.91694 0.94028 0.99917 1.21407 0.98721 0.97058 0.97059 1.22003 0.97815 0.95038 1.01741 1.22130 0.90748 0.99442 0.88803 1.48348 1.42631 1.14756 1.28140 1.21386 0.80932 0.86515 0.81245 1.90549 1.42412 1.83002 1.30827 1.21358 1.00753 0.90072 0.98734 1.21173 0.95127 0.98227 0.94995 1.21532 0.95872 0.98419 0.98806 1.21031 0.99126 0.95900 0.94233 1.21523 0.95181 0.95128 1.02079 1.21088 0.95624 0.99167 0.94360 1.21550 1.00883 0.93054 0.98359 1.21556 0.99654 0.94218 0.98585 1.20789 0.96351 0.95762 0.95467 1.21770 0.95787 1.00909 0.97611 1.21479 0.94449 0.83224 0.99946 0.92927 0.92033 0.94385 0.93942 0.89135 0.90045 0.87054 0.87660 0.89668 0.95479 0.90133 0.92086 0.90775 0.91733 0.88998 0.89932 0.90253 0.90847 0.91277 0.93444 0.92428 0.92437 0.93335 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.99 11.32 21.45 0.24 -52.75 16 2 C 0.02 0.96 5.30 84.66 0.45 1.41 16 3 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.54 -30.53 8.56 25.60 0.22 -30.31 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.04 2.17 2.25 -11.46 -0.03 2.15 16 10 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 11 C -0.10 -4.75 4.96 30.62 0.15 -4.60 16 12 C -0.13 -4.37 6.10 30.82 0.19 -4.18 16 13 C 0.11 3.13 4.93 86.51 0.43 3.56 16 14 N -0.61 -22.39 2.97 -818.07 -2.43 -24.82 16 15 C 0.51 18.39 5.56 87.66 0.49 18.88 16 16 O -0.59 -26.15 12.91 -3.05 -0.04 -26.19 16 17 C -0.09 -2.22 1.43 -11.54 -0.02 -2.24 16 18 C -0.08 -1.49 2.37 -10.79 -0.03 -1.52 16 19 C -0.11 -2.43 4.97 30.59 0.15 -2.28 16 20 C -0.08 -1.82 3.19 -10.79 -0.03 -1.85 16 21 C -0.10 -1.54 5.19 30.59 0.16 -1.38 16 22 C -0.08 -1.13 3.19 -10.81 -0.03 -1.17 16 23 C -0.10 -1.33 5.19 30.58 0.16 -1.17 16 24 C -0.10 -1.73 5.19 30.59 0.16 -1.57 16 25 C -0.06 -1.61 2.39 -10.79 -0.03 -1.63 16 26 C -0.12 -3.32 4.90 30.60 0.15 -3.17 16 27 C 0.13 5.99 5.66 86.36 0.49 6.48 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.06 3.22 6.05 -2.39 -0.01 3.21 16 30 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.08 2.05 8.13 -2.38 -0.02 2.03 16 34 H 0.11 2.35 4.98 -2.39 -0.01 2.34 16 35 H 0.11 2.34 7.20 -2.39 -0.02 2.32 16 36 H 0.09 1.57 5.79 -2.39 -0.01 1.56 16 37 H 0.03 0.79 7.22 -2.39 -0.02 0.77 16 38 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.06 2.05 5.33 -2.39 -0.01 2.04 16 50 H 0.05 2.45 7.00 -2.38 -0.02 2.43 16 51 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -68.74 357.43 3.72 -65.02 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.89 Total: 17.00 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 3.03 Total: -24.61 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -2.18 Total: -77.57 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.04 Total: -26.19 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -68.74 3.72 -65.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397651720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.077 kcal (2) G-P(sol) polarization free energy of solvation -68.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds