Wall clock time and date at job start Tue Mar 31 2020 11:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00139 * 2 1 4 4 H 1.48496 * 109.47560 * 240.00606 * 3 2 1 5 5 H 1.48508 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47243 * 120.00479 * 3 2 1 7 7 C 1.37882 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99512 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00033 * 359.97438 * 7 2 1 10 10 H 1.09010 * 109.49443 * 60.06988 * 9 7 2 11 11 C 1.53037 * 109.49739 * 300.00589 * 9 7 2 12 12 C 1.53046 * 109.53753 * 178.68290 * 11 9 7 13 13 C 1.53191 * 109.31298 * 61.36162 * 12 11 9 14 14 N 1.46931 * 108.77808 * 305.36886 * 13 12 11 15 15 C 1.34771 * 120.62724 * 233.58552 * 14 13 12 16 16 O 1.21290 * 119.99888 * 185.29164 * 15 14 13 17 17 C 1.50697 * 120.00560 * 5.29637 * 15 14 13 18 18 C 1.53004 * 109.47357 * 178.04926 * 17 15 14 19 19 C 1.52997 * 109.47086 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.47260 * 59.99616 * 19 18 17 21 21 C 1.53004 * 109.47384 * 300.00201 * 20 19 18 22 22 C 1.53005 * 109.46952 * 299.99811 * 21 20 19 23 23 C 1.53003 * 109.46922 * 59.99906 * 22 21 20 24 24 C 1.52997 * 109.47232 * 299.99988 * 19 18 17 25 25 C 1.52997 * 109.47260 * 60.00030 * 23 22 21 26 26 C 1.52997 * 109.47086 * 59.99692 * 21 20 19 27 27 C 1.46921 * 118.73842 * 53.85458 * 14 13 12 28 28 H 0.96999 * 119.99846 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46159 * 58.66330 * 11 9 7 30 30 H 1.08998 * 109.46145 * 298.70040 * 11 9 7 31 31 H 1.09002 * 109.49594 * 301.41183 * 12 11 9 32 32 H 1.08994 * 109.49976 * 181.31603 * 12 11 9 33 33 H 1.09000 * 109.58844 * 185.57612 * 13 12 11 34 34 H 1.09003 * 109.58428 * 65.15060 * 13 12 11 35 35 H 1.09000 * 109.47017 * 59.99614 * 18 17 15 36 36 H 1.08998 * 109.46693 * 299.99306 * 18 17 15 37 37 H 1.08994 * 109.47400 * 179.97438 * 19 18 17 38 38 H 1.09007 * 109.46800 * 60.00136 * 20 19 18 39 39 H 1.09003 * 109.47418 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47017 * 179.97438 * 21 20 19 41 41 H 1.08994 * 109.46722 * 300.00015 * 22 21 20 42 42 H 1.08994 * 109.46894 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.46480 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47632 * 179.97438 * 24 19 18 45 45 H 1.09000 * 109.46957 * 300.00264 * 24 19 18 46 46 H 1.09000 * 109.47365 * 179.97438 * 25 23 22 47 47 H 1.09004 * 109.47408 * 59.99764 * 25 23 22 48 48 H 1.08994 * 109.47400 * 180.02562 * 26 21 20 49 49 H 1.08999 * 109.47249 * 59.99760 * 26 21 20 50 50 H 1.08998 * 109.58585 * 65.93116 * 27 14 13 51 51 H 1.08999 * 109.58756 * 186.35262 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5576 -0.8909 11 6 0.3714 -2.5811 1.2491 12 6 -0.4191 -3.8915 1.2335 13 6 0.5569 -5.0721 1.2510 14 7 1.4999 -4.9229 0.1341 15 6 1.6772 -5.9219 -0.7529 16 8 2.5265 -5.8252 -1.6134 17 6 0.8202 -7.1591 -0.6759 18 6 1.1899 -8.1076 -1.8181 19 6 0.3203 -9.3639 -1.7394 20 6 -1.1539 -8.9721 -1.8586 21 6 -1.5236 -8.0236 -0.7164 22 6 -1.2887 -8.7234 0.6238 23 6 0.1855 -9.1152 0.7430 24 6 0.5551 -10.0636 -0.3993 25 6 1.0552 -7.8589 0.6644 26 6 -0.6540 -6.7672 -0.7950 27 6 2.2501 -3.6661 0.0062 28 1 -0.4850 0.8400 0.0004 29 1 -0.3211 -1.7394 1.2615 30 1 1.0002 -2.5468 2.1387 31 1 -1.0295 -3.9375 0.3317 32 1 -1.0627 -3.9386 2.1118 33 1 0.0041 -6.0050 1.1403 34 1 1.1049 -5.0793 2.1933 35 1 2.2400 -8.3870 -1.7329 36 1 1.0229 -7.6089 -2.7728 37 1 0.5832 -10.0394 -2.5534 38 1 -1.3213 -8.4735 -2.8135 39 1 -1.7735 -9.8672 -1.8030 40 1 -2.5737 -7.7441 -0.8016 41 1 -1.9082 -9.6184 0.6798 42 1 -1.5515 -8.0475 1.4375 43 1 0.3529 -9.6133 1.6980 44 1 -0.0647 -10.9585 -0.3430 45 1 1.6053 -10.3428 -0.3143 46 1 2.1054 -8.1379 0.7497 47 1 0.7919 -7.1831 1.4781 48 1 -0.9169 -6.0917 0.0189 49 1 -0.8212 -6.2687 -1.7498 50 1 2.9333 -3.5610 0.8489 51 1 2.8148 -3.6710 -0.9261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397657356.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:02 Heat of formation + Delta-G solvation = -55.878672 kcal Electronic energy + Delta-G solvation = -29343.235604 eV Core-core repulsion = 25819.725898 eV Total energy + Delta-G solvation = -3523.509707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97665 -39.05764 -36.76306 -33.94351 -32.72349 -32.62737 -32.57820 -31.25250 -29.95592 -26.05603 -25.98153 -25.05745 -25.02550 -22.16520 -21.86748 -21.55479 -21.35394 -19.65156 -18.33539 -17.45353 -16.66591 -16.15347 -15.43735 -14.76120 -14.69336 -14.57135 -14.54424 -14.38099 -13.94059 -13.55985 -13.44383 -13.30683 -13.13580 -12.95221 -12.73614 -12.60489 -12.46628 -12.26335 -11.94231 -11.75355 -11.01533 -10.97610 -10.96762 -10.94944 -10.87995 -10.81354 -10.79137 -10.69651 -10.35506 -10.25724 -9.94904 -9.82654 -9.72791 -9.52466 -9.38978 -9.00504 -8.75475 -8.37293 -7.84122 -6.01563 -4.08621 3.10712 3.31545 3.35803 3.38815 3.59654 4.36168 4.41717 4.44244 4.45025 4.94963 5.02535 5.02794 5.11046 5.12676 5.14143 5.24546 5.26811 5.28361 5.28795 5.33453 5.52166 5.60232 5.63313 5.66191 5.68075 5.73833 5.91158 5.92399 5.96157 5.96732 5.98313 6.05833 6.09319 6.10415 6.21417 6.28909 6.33591 6.40291 6.43155 6.46027 6.47515 6.50639 6.68823 6.83882 7.00780 7.18702 7.34723 7.69249 7.93084 8.07189 8.08520 8.38612 8.72137 8.94921 9.56139 11.03756 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.003664 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.252365 B = 7640.487544 C = 7942.356409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.042 3.958 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.085 3.915 14 N -0.599 5.599 15 C 0.518 3.482 16 O -0.553 6.553 17 C -0.067 4.067 18 C -0.085 4.085 19 C -0.086 4.086 20 C -0.108 4.108 21 C -0.084 4.084 22 C -0.109 4.109 23 C -0.083 4.083 24 C -0.108 4.108 25 C -0.117 4.117 26 C -0.118 4.118 27 C 0.116 3.884 28 H 0.261 0.739 29 H 0.095 0.905 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.067 0.933 50 H 0.053 0.947 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 -19.913 2.595 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.023 3.977 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.175 4.175 13 C -0.038 4.038 14 N -0.330 5.330 15 C 0.305 3.695 16 O -0.431 6.431 17 C -0.070 4.070 18 C -0.123 4.123 19 C -0.105 4.105 20 C -0.146 4.146 21 C -0.102 4.102 22 C -0.147 4.147 23 C -0.102 4.102 24 C -0.145 4.145 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.005 4.005 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.105 0.895 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.448 -19.710 2.142 20.319 hybrid contribution 0.455 1.086 0.070 1.179 sum -3.993 -18.625 2.212 19.176 Atomic orbital electron populations 1.69861 1.05879 1.26549 1.50501 1.24927 0.94849 0.99028 0.94934 0.86648 0.79601 0.83024 0.78674 1.20234 1.21312 1.20273 1.21054 0.92967 0.90360 1.50973 0.92583 1.19026 0.92846 0.91083 0.94728 0.95329 1.21619 0.99423 0.95354 0.98557 1.22043 0.97697 0.96842 1.00873 1.22421 0.91915 1.00193 0.89230 1.48211 1.41843 1.15959 1.26984 1.20465 0.83726 0.84193 0.81120 1.90639 1.35384 1.80539 1.36554 1.20613 0.95540 0.93500 0.97354 1.21308 0.99422 0.94166 0.97425 1.21085 0.95309 0.96697 0.97374 1.21558 0.95762 0.98900 0.98373 1.21044 0.99131 0.95010 0.95031 1.21569 0.95799 1.00139 0.97155 1.21039 0.95082 0.95592 0.98458 1.21548 1.01082 0.97507 0.94370 1.21944 1.00270 0.97087 0.96151 1.21932 0.92315 0.97599 1.03647 1.22075 0.95034 0.82079 1.01308 0.92947 0.88679 0.94671 0.92292 0.92582 0.88377 0.92238 0.91451 0.91386 0.91194 0.91930 0.92132 0.90930 0.91954 0.91770 0.91061 0.92112 0.92042 0.91604 0.89933 0.89547 0.91398 0.92883 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 11.31 55.43 0.63 -24.29 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.04 2.27 -91.43 -0.21 0.83 16 10 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 12 C -0.14 -2.39 5.75 -26.61 -0.15 -2.54 16 13 C 0.08 1.31 4.21 -3.71 -0.02 1.30 16 14 N -0.60 -11.16 2.96 -172.51 -0.51 -11.67 16 15 C 0.52 9.53 6.48 -10.99 -0.07 9.46 16 16 O -0.55 -12.20 15.42 5.55 0.09 -12.12 16 17 C -0.07 -0.92 0.49 -155.66 -0.08 -0.99 16 18 C -0.09 -1.12 3.76 -26.73 -0.10 -1.23 16 19 C -0.09 -0.87 3.19 -90.62 -0.29 -1.16 16 20 C -0.11 -1.04 5.19 -26.73 -0.14 -1.17 16 21 C -0.08 -0.83 3.20 -90.62 -0.29 -1.12 16 22 C -0.11 -0.96 5.19 -26.73 -0.14 -1.10 16 23 C -0.08 -0.77 3.19 -90.62 -0.29 -1.06 16 24 C -0.11 -0.97 5.19 -26.73 -0.14 -1.11 16 25 C -0.12 -1.35 4.13 -26.73 -0.11 -1.46 16 26 C -0.12 -1.49 4.15 -26.73 -0.11 -1.60 16 27 C 0.12 2.56 5.67 -3.49 -0.02 2.54 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.26 2.44 -51.93 -0.13 1.14 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.93 4.69 -51.93 -0.24 0.69 16 48 H 0.09 1.12 4.07 -51.93 -0.21 0.91 16 49 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 51 H 0.08 1.84 7.04 -51.93 -0.37 1.47 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -29.57 355.95 -10.93 -40.50 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.81 Total: 1.76 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.67 Total: -15.70 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.12 Total: -35.96 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.57 -10.93 -40.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397657356.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.379 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds