Wall clock time and date at job start Tue Mar 31 2020 11:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99884 * 2 1 4 4 H 1.48502 * 109.46663 * 240.00211 * 3 2 1 5 5 H 1.48502 * 109.47377 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47152 * 120.00237 * 3 2 1 7 7 C 1.37877 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99947 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.52905 * 300.08322 * 9 7 2 11 11 C 1.53040 * 109.49418 * 60.16241 * 9 7 2 12 12 C 1.53359 * 109.60571 * 181.32209 * 11 9 7 13 13 C 1.53191 * 109.14979 * 298.71233 * 12 11 9 14 14 N 1.46926 * 108.89117 * 54.57781 * 13 12 11 15 15 C 1.34782 * 120.63003 * 126.29831 * 14 13 12 16 16 O 1.21280 * 120.00055 * 354.78956 * 15 14 13 17 17 C 1.50696 * 119.99932 * 174.79323 * 15 14 13 18 18 C 1.53004 * 109.47269 * 67.23372 * 17 15 14 19 19 C 1.53005 * 109.47133 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.46784 * 60.00189 * 19 18 17 21 21 C 1.53004 * 109.47475 * 299.99968 * 20 19 18 22 22 C 1.52998 * 109.46598 * 299.99999 * 21 20 19 23 23 C 1.53001 * 109.47073 * 60.00205 * 22 21 20 24 24 C 1.52996 * 109.47150 * 299.99203 * 23 22 21 25 25 C 1.52994 * 109.47393 * 59.99924 * 23 22 21 26 26 C 1.52997 * 109.46991 * 59.99777 * 21 20 19 27 27 C 1.46926 * 118.73966 * 306.31719 * 14 13 12 28 28 H 0.97006 * 119.99951 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46473 * 301.33479 * 11 9 7 30 30 H 1.09004 * 109.46019 * 61.29922 * 11 9 7 31 31 H 1.09002 * 109.68558 * 178.74721 * 12 11 9 32 32 H 1.09005 * 109.47156 * 58.55257 * 12 11 9 33 33 H 1.08990 * 109.58998 * 294.71967 * 13 12 11 34 34 H 1.09003 * 109.58483 * 174.43297 * 13 12 11 35 35 H 1.08990 * 109.46990 * 300.00049 * 18 17 15 36 36 H 1.09000 * 109.46885 * 60.00045 * 18 17 15 37 37 H 1.08997 * 109.47025 * 179.97438 * 19 18 17 38 38 H 1.08998 * 109.47318 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.47149 * 59.99959 * 20 19 18 40 40 H 1.09000 * 109.47229 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47592 * 299.99814 * 22 21 20 42 42 H 1.09002 * 109.46927 * 179.97438 * 22 21 20 43 43 H 1.09004 * 109.47015 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47685 * 179.97438 * 24 23 22 45 45 H 1.08996 * 109.47708 * 300.00777 * 24 23 22 46 46 H 1.09005 * 109.47211 * 180.02562 * 25 23 22 47 47 H 1.09002 * 109.47660 * 59.99622 * 25 23 22 48 48 H 1.09002 * 109.47298 * 180.02562 * 26 21 20 49 49 H 1.09004 * 109.47000 * 60.00397 * 26 21 20 50 50 H 1.09002 * 109.58358 * 173.39645 * 27 14 13 51 51 H 1.08995 * 109.58685 * 293.68095 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7466 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6233 -2.5566 0.8909 11 6 0.3736 -2.5833 -1.2493 12 6 -0.4194 -3.8959 -1.2343 13 6 0.5592 -5.0744 -1.2464 14 7 1.5001 -4.9230 -0.1281 15 6 1.6752 -5.9201 0.7617 16 8 0.9862 -6.9162 0.6997 17 6 2.7272 -5.7972 1.8337 18 6 2.3335 -4.6866 2.8097 19 6 3.4013 -4.5622 3.8984 20 6 4.7477 -4.2227 3.2558 21 6 5.1415 -5.3333 2.2797 22 6 5.2566 -6.6588 3.0351 23 6 3.9102 -6.9983 3.6776 24 6 3.5165 -5.8878 4.6537 25 6 2.8425 -7.1228 2.5890 26 6 4.0736 -5.4577 1.1911 27 6 2.2460 -3.6639 0.0020 28 1 -0.4850 0.8401 0.0004 29 1 -0.3189 -1.7417 -1.2646 30 1 1.0040 -2.5508 -2.1380 31 1 -1.0615 -3.9471 -2.1136 32 1 -1.0314 -3.9404 -0.3333 33 1 1.1088 -5.0834 -2.1876 34 1 0.0079 -6.0083 -1.1363 35 1 2.2511 -3.7424 2.2715 36 1 1.3745 -4.9286 3.2678 37 1 3.1211 -3.7707 4.5935 38 1 5.5084 -4.1337 4.0314 39 1 4.6656 -3.2783 2.7177 40 1 6.1009 -5.0916 1.8222 41 1 6.0173 -6.5702 3.8106 42 1 5.5367 -7.4501 2.3397 43 1 3.9922 -7.9429 4.2154 44 1 2.5571 -6.1293 5.1111 45 1 4.2772 -5.7991 5.4292 46 1 1.8832 -7.3642 3.0469 47 1 3.1230 -7.9139 1.8936 48 1 4.3539 -6.2491 0.4960 49 1 3.9916 -4.5133 0.6530 50 1 2.8059 -3.6660 0.9373 51 1 2.9349 -3.5591 -0.8361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397657357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:07 Heat of formation + Delta-G solvation = -57.638161 kcal Electronic energy + Delta-G solvation = -29729.449188 eV Core-core repulsion = 26205.863185 eV Total energy + Delta-G solvation = -3523.586004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.82056 -39.04410 -36.76578 -33.55109 -33.11368 -32.53136 -32.43595 -31.02219 -30.02059 -25.87155 -25.80139 -25.12431 -24.94467 -22.42422 -21.68599 -21.37420 -21.04170 -19.70236 -18.35345 -17.23445 -16.67208 -16.03124 -15.54271 -14.73670 -14.56952 -14.45399 -14.38145 -14.26145 -13.92132 -13.40167 -13.30921 -13.20602 -13.09609 -12.92282 -12.63697 -12.58597 -12.33615 -12.22109 -11.96680 -11.61133 -11.03214 -10.96435 -10.83077 -10.80918 -10.79888 -10.74366 -10.65651 -10.59052 -10.28153 -10.21692 -9.96016 -9.77142 -9.67824 -9.56046 -9.26470 -8.94975 -8.74344 -8.43132 -7.86387 -6.07273 -4.16006 3.10598 3.25834 3.31720 3.33081 3.59320 4.35643 4.52884 4.60137 4.61080 5.11090 5.17432 5.19413 5.22340 5.26659 5.28482 5.32404 5.41629 5.44500 5.47389 5.61023 5.72995 5.74648 5.80459 5.82236 5.84657 5.87000 6.05408 6.07580 6.09530 6.12061 6.13504 6.17084 6.18790 6.22223 6.28792 6.33327 6.38547 6.45277 6.49504 6.56246 6.57379 6.61661 6.72634 6.81174 7.00988 7.16834 7.34321 7.63053 7.85946 7.97516 8.07597 8.30990 8.69619 8.87718 9.49655 10.97730 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.005360 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.653652 B = 5222.978827 C = 6521.601650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.113 3.887 14 N -0.599 5.599 15 C 0.521 3.479 16 O -0.563 6.563 17 C -0.064 4.064 18 C -0.117 4.117 19 C -0.082 4.082 20 C -0.111 4.111 21 C -0.082 4.082 22 C -0.107 4.107 23 C -0.085 4.085 24 C -0.108 4.108 25 C -0.084 4.084 26 C -0.122 4.122 27 C 0.089 3.911 28 H 0.262 0.738 29 H 0.094 0.906 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.092 0.908 50 H 0.099 0.901 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.352 -10.198 5.354 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.010 4.010 14 N -0.330 5.330 15 C 0.309 3.691 16 O -0.443 6.443 17 C -0.067 4.067 18 C -0.154 4.154 19 C -0.101 4.101 20 C -0.148 4.148 21 C -0.101 4.101 22 C -0.145 4.145 23 C -0.104 4.104 24 C -0.145 4.145 25 C -0.122 4.122 26 C -0.160 4.160 27 C -0.032 4.032 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.116 0.884 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.827 -10.586 5.300 14.192 hybrid contribution 0.339 1.014 -0.166 1.082 sum 8.167 -9.571 5.134 13.589 Atomic orbital electron populations 1.69868 1.05913 1.26665 1.49942 1.24924 0.94795 0.99020 0.94846 0.86687 0.79642 0.83199 0.78653 1.20262 1.21319 1.20207 1.20997 0.92812 0.90237 1.51617 0.92540 1.18977 0.92858 0.90979 0.95019 0.95184 1.21683 0.99400 0.95467 0.98455 1.22043 0.97706 0.96588 1.00865 1.21553 0.91520 0.99572 0.88311 1.48226 1.42017 1.15896 1.26892 1.20552 0.83979 0.82451 0.82075 1.90598 1.48229 1.31408 1.74069 1.20572 0.94199 0.97689 0.94280 1.21891 0.98375 0.98913 0.96259 1.21015 0.95185 0.97181 0.96678 1.21579 0.96497 0.98429 0.98330 1.21022 0.98173 0.95217 0.95664 1.21553 0.96660 0.97107 0.99164 1.21074 0.95017 0.98207 0.96085 1.21556 1.01057 0.94741 0.97174 1.21299 0.98917 0.95166 0.96773 1.22041 0.92857 1.03439 0.97628 1.22770 0.95651 0.82941 1.01839 0.92842 0.88758 0.94676 0.92649 0.92526 0.92469 0.90432 0.88694 0.91751 0.90826 0.92120 0.91147 0.91104 0.92184 0.92240 0.91387 0.92097 0.92196 0.91422 0.91870 0.92029 0.88986 0.88375 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.03 11.32 55.43 0.63 -23.40 16 2 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.52 -12.98 8.56 -34.44 -0.29 -13.28 16 8 H 0.06 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.04 0.93 2.17 -91.65 -0.20 0.73 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.50 4.97 -26.52 -0.13 -2.63 16 12 C -0.13 -2.58 6.11 -26.45 -0.16 -2.74 16 13 C 0.11 2.05 6.43 -3.71 -0.02 2.03 16 14 N -0.60 -11.17 2.96 -172.77 -0.51 -11.68 16 15 C 0.52 9.65 6.48 -10.98 -0.07 9.58 16 16 O -0.56 -11.87 15.39 5.56 0.09 -11.78 16 17 C -0.06 -0.97 0.49 -155.66 -0.08 -1.05 16 18 C -0.12 -1.77 4.19 -26.73 -0.11 -1.88 16 19 C -0.08 -1.03 3.20 -90.62 -0.29 -1.32 16 20 C -0.11 -1.31 5.19 -26.73 -0.14 -1.45 16 21 C -0.08 -0.95 3.20 -90.62 -0.29 -1.24 16 22 C -0.11 -1.13 5.19 -26.73 -0.14 -1.27 16 23 C -0.09 -0.96 3.19 -90.62 -0.29 -1.25 16 24 C -0.11 -1.20 5.19 -26.73 -0.14 -1.34 16 25 C -0.08 -1.16 3.79 -26.73 -0.10 -1.27 16 26 C -0.12 -1.67 4.08 -26.73 -0.11 -1.78 16 27 C 0.09 1.69 3.24 -3.71 -0.01 1.68 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.09 2.39 6.05 -51.93 -0.31 2.07 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 35 H 0.09 1.63 4.99 -51.93 -0.26 1.37 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.09 1.35 4.36 -51.93 -0.23 1.12 16 50 H 0.10 1.74 2.50 -51.93 -0.13 1.61 16 51 H 0.06 1.05 8.02 -51.93 -0.42 0.63 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -27.53 356.93 -10.97 -38.50 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.85 Total: 4.72 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.67 Total: -16.84 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.12 Total: -35.08 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.53 -10.97 -38.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397657357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.141 kcal (2) G-P(sol) polarization free energy of solvation -27.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds