Wall clock time and date at job start Tue Mar 31 2020 11:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48497 * 109.47046 * 240.00135 * 3 2 1 5 5 H 1.48498 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47070 * 120.00419 * 3 2 1 7 7 C 1.37870 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.53123 * 109.52083 * 175.00151 * 10 9 7 12 12 C 1.53037 * 109.28005 * 177.62004 * 11 10 9 13 13 N 1.46846 * 109.52023 * 300.82249 * 12 11 10 14 14 C 1.46897 * 110.99843 * 185.83963 * 13 12 11 15 15 C 1.53006 * 109.47485 * 169.99708 * 14 13 12 16 16 C 1.52991 * 109.47150 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47131 * 179.97438 * 16 15 14 18 18 C 1.42899 * 114.00342 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47103 * 180.02562 * 18 17 16 20 20 C 1.38235 * 119.99808 * 89.99842 * 19 18 17 21 21 C 1.38243 * 119.99602 * 179.97438 * 20 19 18 22 22 C 1.38232 * 120.00069 * 0.09581 * 21 20 19 23 23 C 1.38234 * 119.99866 * 359.86117 * 22 21 20 24 24 C 1.38230 * 119.99865 * 269.97588 * 19 18 17 25 25 C 1.46842 * 111.20142 * 61.73914 * 13 12 11 26 26 C 1.53036 * 109.52637 * 298.25760 * 25 13 12 27 27 H 0.96999 * 120.00022 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47121 * 60.00650 * 9 7 2 29 29 H 1.09003 * 109.47006 * 299.99864 * 9 7 2 30 30 H 1.08994 * 109.52506 * 54.87265 * 10 9 7 31 31 H 1.08996 * 109.50314 * 57.67677 * 11 10 9 32 32 H 1.08998 * 109.49934 * 297.55996 * 11 10 9 33 33 H 1.08996 * 109.46548 * 180.80167 * 12 11 10 34 34 H 1.09003 * 109.44956 * 60.82516 * 12 11 10 35 35 H 1.09003 * 109.47671 * 49.99612 * 14 13 12 36 36 H 1.09001 * 109.46956 * 289.99660 * 14 13 12 37 37 H 1.08999 * 109.46866 * 59.99821 * 15 14 13 38 38 H 1.09001 * 109.46984 * 299.99934 * 15 14 13 39 39 H 1.08999 * 109.47303 * 60.00185 * 16 15 14 40 40 H 1.08994 * 109.47466 * 299.99641 * 16 15 14 41 41 H 1.08993 * 109.47528 * 59.99500 * 18 17 16 42 42 H 1.09001 * 109.46686 * 299.99411 * 18 17 16 43 43 H 1.08000 * 120.00616 * 359.70324 * 20 19 18 44 44 H 1.08001 * 119.99556 * 179.97438 * 21 20 19 45 45 H 1.07997 * 119.99666 * 179.97438 * 22 21 20 46 46 H 1.08000 * 119.99729 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.00371 * 0.02562 * 24 19 18 48 48 H 1.08996 * 109.46666 * 58.27707 * 25 13 12 49 49 H 1.09009 * 109.46061 * 178.24191 * 25 13 12 50 50 H 1.09006 * 109.50046 * 299.24114 * 26 25 13 51 51 H 1.08991 * 109.50586 * 179.12089 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4850 -4.9853 0.1252 12 6 2.4794 -6.1470 0.0649 13 7 3.2110 -6.1011 -1.2075 14 6 4.0752 -7.2791 -1.3605 15 6 4.6253 -7.3263 -2.7875 16 6 5.5259 -8.5528 -2.9466 17 8 6.0392 -8.5971 -4.2795 18 6 6.8968 -9.7112 -4.5354 19 6 7.3777 -9.6575 -5.9626 20 6 8.5439 -8.9837 -6.2741 21 6 8.9853 -8.9349 -7.5832 22 6 8.2595 -9.5582 -8.5810 23 6 7.0938 -10.2327 -8.2693 24 6 6.6530 -10.2824 -6.9601 25 6 3.9864 -4.8601 -1.3298 26 6 3.0370 -3.6599 -1.3111 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.9313 -3.5548 0.8396 31 1 0.7714 -5.0742 -0.6938 32 1 0.9533 -5.0104 1.0763 33 1 1.9399 -7.0911 0.1399 34 1 3.1843 -6.0648 0.8923 35 1 3.4971 -8.1820 -1.1640 36 1 4.9029 -7.2167 -0.6539 37 1 5.2036 -6.4234 -2.9839 38 1 3.7977 -7.3886 -3.4940 39 1 4.9480 -9.4558 -2.7500 40 1 6.3535 -8.4900 -2.2402 41 1 6.3472 -10.6380 -4.3714 42 1 7.7532 -9.6725 -3.8622 43 1 9.1078 -8.4917 -5.4954 44 1 9.8961 -8.4082 -7.8266 45 1 8.6042 -9.5197 -9.6038 46 1 6.5270 -10.7200 -9.0488 47 1 5.7418 -10.8088 -6.7168 48 1 4.6842 -4.7841 -0.4960 49 1 4.5414 -4.8696 -2.2679 50 1 2.3478 -3.7281 -2.1528 51 1 3.6140 -2.7383 -1.3862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399292431.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:19 Heat of formation + Delta-G solvation = -44.093487 kcal Electronic energy + Delta-G solvation = -25295.749049 eV Core-core repulsion = 21772.750386 eV Total energy + Delta-G solvation = -3522.998663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.71996 -38.89703 -37.91497 -35.08194 -33.05094 -32.23473 -31.24444 -31.08027 -30.29033 -27.89820 -26.38814 -24.87991 -23.23741 -22.93008 -22.81782 -21.73961 -21.10418 -20.41470 -18.87679 -17.26699 -16.87269 -16.55011 -16.21639 -15.83684 -15.44339 -15.38598 -14.70520 -14.48192 -14.24498 -14.08668 -13.76961 -13.61315 -13.34329 -13.13598 -13.01590 -12.78971 -12.44263 -12.16315 -12.02578 -11.78895 -11.47338 -11.40810 -11.33200 -11.16791 -11.07393 -10.87928 -10.76281 -10.60603 -10.49543 -10.22431 -9.91069 -9.87191 -9.47562 -9.25836 -9.18747 -8.99915 -8.84292 -8.28844 -8.06502 -5.93756 -3.95142 0.91525 1.06407 3.17072 3.36294 3.40761 3.43050 3.68955 4.17830 4.45300 4.50390 4.50670 4.66434 4.77074 4.78896 4.89993 4.96090 5.05925 5.12641 5.19353 5.21113 5.29680 5.33399 5.40438 5.41587 5.49808 5.59181 5.61731 5.65657 5.68989 5.78172 5.92195 5.95401 6.07983 6.09394 6.12969 6.16057 6.21344 6.24244 6.30907 6.49596 6.62625 6.63254 6.71635 6.92687 7.02929 7.15314 7.24415 7.38181 7.42669 7.74302 7.91569 8.07172 8.50321 9.11180 9.68011 11.17528 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.001859 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.465604 B =15058.570225 C =16168.118338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.112 4.112 12 C 0.060 3.940 13 N -0.536 5.536 14 C 0.060 3.940 15 C -0.116 4.116 16 C 0.064 3.936 17 O -0.380 6.380 18 C 0.103 3.897 19 C -0.090 4.090 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.099 4.099 25 C 0.053 3.947 26 C -0.100 4.100 27 H 0.260 0.740 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.026 0.974 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.792 -24.093 -11.145 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.067 4.067 13 N -0.261 5.261 14 C -0.068 4.068 15 C -0.154 4.154 16 C -0.013 4.013 17 O -0.299 6.299 18 C 0.026 3.974 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.117 4.117 25 C -0.075 4.075 26 C -0.138 4.138 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.044 0.956 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.241 -23.836 -11.645 30.595 hybrid contribution 1.118 0.801 0.866 1.625 sum 16.359 -23.035 -10.779 30.240 Atomic orbital electron populations 1.69956 1.06002 1.26524 1.51092 1.25019 0.94814 0.99112 0.95583 0.86709 0.79606 0.83447 0.78529 1.20284 1.21386 1.20389 1.21219 0.92871 0.91060 1.50107 0.92791 1.19115 0.93631 0.91041 0.97111 1.21239 0.97881 0.94772 0.96144 1.21692 0.97542 0.94267 1.01478 1.22097 0.96262 0.99415 0.88960 1.61894 1.27884 1.01692 1.34611 1.21922 0.95311 0.94320 0.95291 1.21509 0.99251 0.97146 0.97452 1.22485 0.96583 0.98774 0.83418 1.87984 1.65194 1.46452 1.30306 1.21284 0.93564 0.89794 0.92728 1.19624 0.95560 0.99236 0.94590 1.21093 0.96101 0.97681 0.96813 1.21171 1.00189 0.99905 0.92922 1.21216 0.95312 0.97485 0.99356 1.21166 0.96824 0.99811 0.96397 1.21086 0.98959 0.98989 0.92637 1.22274 0.95356 0.89986 0.99862 1.21546 0.97864 0.95510 0.98840 0.93073 0.96485 0.96793 0.93129 0.91572 0.92159 0.91689 0.95481 0.91046 0.95236 0.90866 0.90146 0.93289 0.93477 0.92477 0.92525 0.85913 0.85871 0.85997 0.85872 0.85900 0.95571 0.91283 0.91837 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.51 8.45 -34.44 -0.29 -14.80 16 8 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 9 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 10 C -0.08 -1.70 2.20 -90.49 -0.20 -1.90 16 11 C -0.11 -1.98 5.38 -26.65 -0.14 -2.12 16 12 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 13 N -0.54 -7.90 4.66 -234.67 -1.09 -8.99 16 14 C 0.06 0.70 4.96 -3.82 -0.02 0.68 16 15 C -0.12 -1.29 5.51 -26.73 -0.15 -1.44 16 16 C 0.06 0.61 5.94 37.15 0.22 0.83 16 17 O -0.38 -4.21 10.33 -35.23 -0.36 -4.57 16 18 C 0.10 0.87 6.06 36.01 0.22 1.09 16 19 C -0.09 -0.82 5.51 -104.63 -0.58 -1.39 16 20 C -0.10 -0.84 9.70 -39.58 -0.38 -1.23 16 21 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 22 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 24 C -0.10 -0.83 9.70 -39.59 -0.38 -1.22 16 25 C 0.05 0.83 5.29 -3.84 -0.02 0.81 16 26 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.84 8.01 -51.93 -0.42 0.43 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.74 7.99 -51.93 -0.41 0.33 16 36 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 37 H 0.07 0.89 6.43 -51.93 -0.33 0.56 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 42 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 48 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 1.01 6.21 -51.92 -0.32 0.69 16 50 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.07 1.48 7.06 -51.93 -0.37 1.11 16 LS Contribution 403.73 15.07 6.08 6.08 Total: -1.00 -31.44 403.73 -12.34 -43.78 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -9.39 Total: -3.00 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -3.30 Total: -23.69 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.36 Total: -35.46 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.36 Total: -4.57 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.44 -12.34 -43.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399292431.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.314 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds