Wall clock time and date at job start Tue Mar 31 2020 11:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48497 * 109.47046 * 240.00135 * 3 2 1 5 5 H 1.48498 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47070 * 120.00419 * 3 2 1 7 7 C 1.37870 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.53123 * 109.52083 * 175.00151 * 10 9 7 12 12 C 1.53037 * 109.28005 * 177.62004 * 11 10 9 13 13 N 1.46846 * 109.52023 * 300.82249 * 12 11 10 14 14 C 1.46897 * 110.99843 * 185.83963 * 13 12 11 15 15 C 1.53006 * 109.47485 * 169.99708 * 14 13 12 16 16 C 1.52991 * 109.47150 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47131 * 179.97438 * 16 15 14 18 18 C 1.42899 * 114.00342 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47103 * 180.02562 * 18 17 16 20 20 C 1.38235 * 119.99808 * 89.99842 * 19 18 17 21 21 C 1.38243 * 119.99602 * 179.97438 * 20 19 18 22 22 C 1.38232 * 120.00069 * 0.09581 * 21 20 19 23 23 C 1.38234 * 119.99866 * 359.86117 * 22 21 20 24 24 C 1.38230 * 119.99865 * 269.97588 * 19 18 17 25 25 C 1.46842 * 111.20142 * 61.73914 * 13 12 11 26 26 C 1.53036 * 109.52637 * 298.25760 * 25 13 12 27 27 H 0.96999 * 120.00022 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47121 * 60.00650 * 9 7 2 29 29 H 1.09003 * 109.47006 * 299.99864 * 9 7 2 30 30 H 1.08994 * 109.52506 * 54.87265 * 10 9 7 31 31 H 1.08996 * 109.50314 * 57.67677 * 11 10 9 32 32 H 1.08998 * 109.49934 * 297.55996 * 11 10 9 33 33 H 1.08996 * 109.46548 * 180.80167 * 12 11 10 34 34 H 1.09003 * 109.44956 * 60.82516 * 12 11 10 35 35 H 1.09003 * 109.47671 * 49.99612 * 14 13 12 36 36 H 1.09001 * 109.46956 * 289.99660 * 14 13 12 37 37 H 1.08999 * 109.46866 * 59.99821 * 15 14 13 38 38 H 1.09001 * 109.46984 * 299.99934 * 15 14 13 39 39 H 1.08999 * 109.47303 * 60.00185 * 16 15 14 40 40 H 1.08994 * 109.47466 * 299.99641 * 16 15 14 41 41 H 1.08993 * 109.47528 * 59.99500 * 18 17 16 42 42 H 1.09001 * 109.46686 * 299.99411 * 18 17 16 43 43 H 1.08000 * 120.00616 * 359.70324 * 20 19 18 44 44 H 1.08001 * 119.99556 * 179.97438 * 21 20 19 45 45 H 1.07997 * 119.99666 * 179.97438 * 22 21 20 46 46 H 1.08000 * 119.99729 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.00371 * 0.02562 * 24 19 18 48 48 H 1.08996 * 109.46666 * 58.27707 * 25 13 12 49 49 H 1.09009 * 109.46061 * 178.24191 * 25 13 12 50 50 H 1.09006 * 109.50046 * 299.24114 * 26 25 13 51 51 H 1.08991 * 109.50586 * 179.12089 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4850 -4.9853 0.1252 12 6 2.4794 -6.1470 0.0649 13 7 3.2110 -6.1011 -1.2075 14 6 4.0752 -7.2791 -1.3605 15 6 4.6253 -7.3263 -2.7875 16 6 5.5259 -8.5528 -2.9466 17 8 6.0392 -8.5971 -4.2795 18 6 6.8968 -9.7112 -4.5354 19 6 7.3777 -9.6575 -5.9626 20 6 8.5439 -8.9837 -6.2741 21 6 8.9853 -8.9349 -7.5832 22 6 8.2595 -9.5582 -8.5810 23 6 7.0938 -10.2327 -8.2693 24 6 6.6530 -10.2824 -6.9601 25 6 3.9864 -4.8601 -1.3298 26 6 3.0370 -3.6599 -1.3111 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.9313 -3.5548 0.8396 31 1 0.7714 -5.0742 -0.6938 32 1 0.9533 -5.0104 1.0763 33 1 1.9399 -7.0911 0.1399 34 1 3.1843 -6.0648 0.8923 35 1 3.4971 -8.1820 -1.1640 36 1 4.9029 -7.2167 -0.6539 37 1 5.2036 -6.4234 -2.9839 38 1 3.7977 -7.3886 -3.4940 39 1 4.9480 -9.4558 -2.7500 40 1 6.3535 -8.4900 -2.2402 41 1 6.3472 -10.6380 -4.3714 42 1 7.7532 -9.6725 -3.8622 43 1 9.1078 -8.4917 -5.4954 44 1 9.8961 -8.4082 -7.8266 45 1 8.6042 -9.5197 -9.6038 46 1 6.5270 -10.7200 -9.0488 47 1 5.7418 -10.8088 -6.7168 48 1 4.6842 -4.7841 -0.4960 49 1 4.5414 -4.8696 -2.2679 50 1 2.3478 -3.7281 -2.1528 51 1 3.6140 -2.7383 -1.3862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399292431.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:19 Heat of formation + Delta-G solvation = -60.553978 kcal Electronic energy + Delta-G solvation = -25296.462829 eV Core-core repulsion = 21772.750386 eV Total energy + Delta-G solvation = -3523.712443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33778 -40.12070 -38.67766 -36.53345 -34.68660 -33.34034 -32.19713 -31.79887 -31.62558 -29.56529 -27.21589 -26.20122 -24.66474 -24.15796 -23.48995 -22.57930 -22.24072 -21.59330 -20.43988 -18.42090 -17.85274 -17.63417 -17.25454 -16.76777 -16.48653 -16.25243 -16.14963 -15.67676 -15.26532 -15.14735 -14.86408 -14.72038 -14.53078 -14.26430 -14.06860 -13.79898 -13.66439 -13.32055 -13.26564 -13.03334 -12.94159 -12.70069 -12.58127 -12.35871 -12.19070 -12.01826 -12.00494 -11.93596 -11.82109 -11.72968 -11.60877 -11.22724 -10.84536 -10.69260 -10.56227 -10.50447 -9.83331 -9.76988 -9.20278 -8.16732 -6.26463 0.33129 0.48882 1.39195 1.42222 1.49841 2.41929 2.51050 2.93800 3.15862 3.25238 3.85778 3.90826 3.94456 4.03811 4.08492 4.13329 4.14434 4.25876 4.27680 4.32500 4.34403 4.43667 4.46016 4.50149 4.57416 4.63061 4.64328 4.66825 4.74209 4.76311 4.79490 4.85992 4.95239 5.07301 5.09132 5.14493 5.17245 5.21642 5.28546 5.39279 5.42719 5.46088 5.54014 5.58204 5.60328 5.65702 5.81671 5.89913 6.08741 6.18377 6.22555 6.29147 6.33066 6.89346 7.41616 8.94906 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.001859 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.465604 B =15058.570225 C =16168.118338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.075 4.075 11 C -0.108 4.108 12 C 0.068 3.932 13 N -0.550 5.550 14 C 0.064 3.936 15 C -0.110 4.110 16 C 0.067 3.933 17 O -0.406 6.406 18 C 0.101 3.899 19 C -0.109 4.109 20 C -0.115 4.115 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.114 4.114 25 C 0.064 3.936 26 C -0.095 4.095 27 H 0.262 0.738 28 H -0.013 1.013 29 H -0.013 1.013 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.129 0.871 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.131 0.869 48 H 0.032 0.968 49 H 0.081 0.919 50 H 0.046 0.954 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.766 -25.448 -11.311 33.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.094 4.094 11 C -0.146 4.146 12 C -0.060 4.060 13 N -0.275 5.275 14 C -0.063 4.063 15 C -0.148 4.148 16 C -0.009 4.009 17 O -0.326 6.326 18 C 0.026 3.974 19 C -0.109 4.109 20 C -0.133 4.133 21 C -0.151 4.151 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.132 4.132 25 C -0.064 4.064 26 C -0.133 4.133 27 H 0.070 0.930 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.147 0.853 44 H 0.158 0.842 45 H 0.161 0.839 46 H 0.159 0.841 47 H 0.149 0.851 48 H 0.050 0.950 49 H 0.099 0.901 50 H 0.065 0.935 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.231 -25.214 -11.809 32.743 hybrid contribution 0.466 1.204 0.872 1.558 sum 17.697 -24.010 -10.937 31.769 Atomic orbital electron populations 1.70101 1.07765 1.27592 1.52092 1.25974 0.95741 1.03256 0.95105 0.85559 0.78301 0.78425 0.79121 1.19254 1.20995 1.19218 1.21619 0.93347 0.92157 1.49714 0.92222 1.19013 0.94032 0.93090 0.94253 1.21093 0.96912 0.94444 0.96927 1.21608 0.97900 0.93909 1.01173 1.22022 0.95791 0.98886 0.89290 1.61841 1.28748 1.02238 1.34685 1.21961 0.95425 0.93377 0.95583 1.21420 0.98870 0.97604 0.96931 1.22471 0.96872 0.98403 0.83192 1.87940 1.65845 1.47711 1.31142 1.21404 0.93788 0.89539 0.92718 1.19848 0.96054 0.99851 0.95185 1.21317 0.96365 0.98041 0.97577 1.21471 1.00910 0.99945 0.92768 1.21550 0.95158 0.96973 1.00408 1.21476 0.97147 0.99772 0.96638 1.21320 0.99431 0.99340 0.93090 1.22078 0.94395 0.89104 1.00783 1.21422 0.97857 0.96840 0.97175 0.92961 0.99497 0.99506 0.93366 0.92793 0.91870 0.89045 0.94721 0.89144 0.94070 0.92217 0.91667 0.91686 0.92181 0.91186 0.91400 0.85268 0.84163 0.83930 0.84060 0.85099 0.94995 0.90104 0.93508 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.44 0.28 -57.98 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.53 -30.64 8.45 25.60 0.22 -30.42 16 8 H 0.06 3.30 7.08 -2.91 -0.02 3.28 16 9 C 0.03 1.80 4.45 29.85 0.13 1.93 16 10 C -0.08 -3.17 2.20 -10.71 -0.02 -3.20 16 11 C -0.11 -3.79 5.38 30.65 0.16 -3.62 16 12 C 0.07 1.84 5.46 86.33 0.47 2.31 16 13 N -0.55 -15.09 4.66 -896.36 -4.17 -19.26 16 14 C 0.06 1.29 4.96 86.31 0.43 1.72 16 15 C -0.11 -2.26 5.51 30.59 0.17 -2.09 16 16 C 0.07 1.11 5.94 71.98 0.43 1.54 16 17 O -0.41 -8.47 10.33 -148.98 -1.54 -10.01 16 18 C 0.10 1.58 6.06 71.24 0.43 2.01 16 19 C -0.11 -1.90 5.51 -19.87 -0.11 -2.01 16 20 C -0.11 -1.89 9.70 22.27 0.22 -1.67 16 21 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 22 C -0.12 -1.63 10.05 22.27 0.22 -1.41 16 23 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 24 C -0.11 -1.83 9.70 22.27 0.22 -1.62 16 25 C 0.06 1.95 5.29 86.33 0.46 2.40 16 26 C -0.10 -3.70 5.15 30.65 0.16 -3.55 16 27 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 28 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 2.06 8.01 -2.39 -0.02 2.04 16 34 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.53 7.99 -2.39 -0.02 1.51 16 36 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 37 H 0.06 1.37 6.43 -2.39 -0.02 1.36 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 42 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 43 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 46 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 48 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.08 2.27 6.21 -2.38 -0.01 2.26 16 50 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 51 H 0.05 2.30 7.06 -2.39 -0.02 2.28 16 Total: -1.00 -69.25 403.73 1.94 -67.30 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.86 Total: 13.41 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 4.49 Total: -40.72 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -3.89 Total: -77.24 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.54 Total: -10.01 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.25 1.94 -67.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399292431.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.751 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds