Wall clock time and date at job start Tue Mar 31 2020 12:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 C 1.53003 * 109.46783 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46892 * 65.00499 * 4 3 2 6 6 C 1.52998 * 109.47383 * 62.97389 * 5 4 3 7 7 C 1.52999 * 109.47061 * 174.93537 * 6 5 4 8 8 C 1.50701 * 109.46712 * 184.99941 * 4 3 2 9 9 O 1.21278 * 120.00475 * 350.64756 * 8 4 3 10 10 N 1.34783 * 119.99583 * 170.91660 * 8 4 3 11 11 C 1.46497 * 119.99479 * 183.74440 * 10 8 4 12 12 H 1.08994 * 109.47685 * 341.51447 * 11 10 8 13 13 C 1.53008 * 109.47049 * 101.51896 * 11 10 8 14 14 C 1.50699 * 109.46685 * 297.41121 * 13 11 10 15 15 H 1.08005 * 120.00403 * 4.44826 * 14 13 11 16 16 C 1.37877 * 119.99672 * 184.44103 * 14 13 11 17 17 N 1.31517 * 119.99742 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00400 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46811 * 89.99580 * 18 16 14 20 20 H 1.48494 * 109.47622 * 209.99581 * 18 16 14 21 21 H 1.48508 * 109.46954 * 330.00277 * 18 16 14 22 22 C 1.50704 * 109.46853 * 221.51099 * 11 10 8 23 23 C 1.38230 * 120.00262 * 319.73258 * 22 11 10 24 24 C 1.38237 * 119.99872 * 179.78382 * 23 22 11 25 25 C 1.38231 * 119.99757 * 0.44528 * 24 23 22 26 26 C 1.38233 * 120.00654 * 359.80706 * 25 24 23 27 27 C 1.38234 * 119.99674 * 140.00277 * 22 11 10 28 28 H 1.09000 * 109.46705 * 59.99985 * 1 2 3 29 29 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47024 * 300.00111 * 1 2 3 31 31 H 1.09001 * 109.46834 * 240.00180 * 2 1 3 32 32 H 1.09000 * 109.46705 * 120.00015 * 2 1 3 33 33 H 1.09001 * 109.46660 * 60.00179 * 3 2 1 34 34 H 1.08990 * 109.47056 * 300.00057 * 3 2 1 35 35 H 1.09001 * 109.47185 * 305.00503 * 4 3 2 36 36 H 1.08999 * 109.46977 * 182.97586 * 5 4 3 37 37 H 1.09004 * 109.46991 * 302.97206 * 5 4 3 38 38 H 1.08998 * 109.47391 * 294.93382 * 6 5 4 39 39 H 1.09001 * 109.47302 * 54.93413 * 6 5 4 40 40 H 1.09003 * 109.47271 * 299.99549 * 7 6 5 41 41 H 1.08998 * 109.47334 * 60.00538 * 7 6 5 42 42 H 1.09005 * 109.46997 * 179.97438 * 7 6 5 43 43 H 0.96993 * 119.99708 * 3.74975 * 10 8 4 44 44 H 1.09002 * 109.46752 * 57.41174 * 13 11 10 45 45 H 1.08993 * 109.47107 * 177.41502 * 13 11 10 46 46 H 0.97006 * 119.99943 * 180.02562 * 17 16 14 47 47 H 1.07996 * 120.00149 * 359.97438 * 23 22 11 48 48 H 1.08005 * 119.99792 * 180.27473 * 24 23 22 49 49 H 1.08007 * 119.99517 * 179.83027 * 25 24 23 50 50 H 1.07993 * 120.00446 * 179.97438 * 26 25 24 51 51 H 1.08006 * 120.00182 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0806 0.8327 -1.3064 6 6 3.6331 1.7017 -2.4835 7 6 4.2480 1.1638 -3.7772 8 6 4.0724 2.8579 0.1245 9 8 3.2975 3.7865 0.0339 10 7 5.3836 3.0920 0.3305 11 6 5.8600 4.4625 0.5327 12 1 5.1111 5.1652 0.1674 13 6 6.1011 4.7038 2.0243 14 6 4.8001 4.5653 2.7722 15 1 3.9064 4.2587 2.2490 16 6 4.7509 4.8299 4.1244 17 7 3.6156 4.7086 4.7772 18 14 6.2964 5.3608 5.0293 19 1 6.4057 6.8414 4.9958 20 1 6.2269 4.9014 6.4396 21 1 7.4855 4.7617 4.3715 22 6 7.1482 4.6633 -0.2232 23 6 8.1002 3.6613 -0.2449 24 6 9.2799 3.8437 -0.9420 25 6 9.5114 5.0317 -1.6098 26 6 8.5616 6.0358 -1.5838 27 6 7.3801 5.8516 -0.8903 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 3.9331 0.8530 0.8427 36 1 5.1692 0.7841 -1.2839 37 1 3.6743 -0.1722 -1.4216 38 1 2.5461 1.6775 -2.5605 39 1 3.9633 2.7281 -2.3236 40 1 5.3351 1.1880 -3.7003 41 1 3.9177 0.1374 -3.9372 42 1 3.9289 1.7826 -4.6159 43 1 6.0118 2.3531 0.3447 44 1 6.8159 3.9716 2.3998 45 1 6.4989 5.7080 2.1702 46 1 3.5808 4.8951 5.7285 47 1 7.9211 2.7347 0.2802 48 1 10.0218 3.0591 -0.9626 49 1 10.4343 5.1753 -2.1521 50 1 8.7427 6.9640 -2.1052 51 1 6.6379 6.6360 -0.8701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410602255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:02 Heat of formation + Delta-G solvation = -69.668910 kcal Electronic energy + Delta-G solvation = -27655.359531 eV Core-core repulsion = 24131.251835 eV Total energy + Delta-G solvation = -3524.107696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31762 -40.03366 -37.70781 -36.51647 -34.79307 -34.56033 -32.78104 -31.75104 -31.31117 -30.91295 -27.22106 -26.87348 -24.86414 -23.61093 -23.31645 -22.99340 -22.01452 -21.20679 -20.22058 -19.02420 -18.02324 -17.44543 -16.95846 -16.72803 -16.45940 -16.08845 -15.91743 -15.55758 -15.12126 -14.85463 -14.79119 -14.66143 -14.24589 -14.20245 -14.07961 -14.03115 -13.74765 -13.53467 -13.23449 -12.97879 -12.81824 -12.72145 -12.57233 -12.40952 -12.37431 -12.03974 -11.86615 -11.83102 -11.80933 -11.69019 -11.56411 -11.49427 -11.24703 -11.15376 -10.78075 -10.51921 -9.85045 -9.76727 -9.54771 -8.24373 -6.27496 0.47005 0.54109 1.32097 1.32618 1.44522 1.92183 2.35146 2.43375 2.95283 3.09587 3.76491 3.77662 3.83077 3.92678 4.02475 4.14729 4.19895 4.22339 4.28414 4.32815 4.39671 4.48556 4.57289 4.64391 4.67649 4.71563 4.76966 4.78530 4.82210 4.86870 4.96087 5.00199 5.03453 5.10326 5.10918 5.13607 5.18403 5.22789 5.30487 5.33968 5.38028 5.44229 5.45882 5.57335 5.57610 5.63790 5.64975 5.66279 5.89547 6.15911 6.35697 6.77121 6.86529 7.34828 7.55739 8.92345 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008089 B = 0.005717 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3460.502204 B = 4896.148770 C = 7756.783976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.097 4.097 4 C -0.103 4.103 5 C -0.098 4.098 6 C -0.128 4.128 7 C -0.143 4.143 8 C 0.521 3.479 9 O -0.588 6.588 10 N -0.702 5.702 11 C 0.200 3.800 12 H 0.060 0.940 13 C -0.008 4.008 14 C -0.517 4.517 15 H 0.044 0.956 16 C 0.003 3.997 17 N -0.953 5.953 18 Si 0.945 3.055 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.245 1.245 22 C -0.096 4.096 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.133 4.133 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.025 0.975 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.405 0.595 44 H 0.027 0.973 45 H 0.018 0.982 46 H 0.262 0.738 47 H 0.128 0.872 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.143 0.857 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.706 -10.773 -16.910 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.135 4.135 4 C -0.125 4.125 5 C -0.135 4.135 6 C -0.165 4.165 7 C -0.200 4.200 8 C 0.309 3.691 9 O -0.468 6.468 10 N -0.353 5.353 11 C 0.095 3.905 12 H 0.078 0.922 13 C -0.046 4.046 14 C -0.555 4.555 15 H 0.062 0.938 16 C -0.193 4.193 17 N -0.594 5.594 18 Si 0.769 3.231 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.168 1.168 22 C -0.097 4.097 23 C -0.140 4.140 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.152 4.152 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.241 0.759 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.071 0.929 47 H 0.146 0.854 48 H 0.169 0.831 49 H 0.169 0.831 50 H 0.160 0.840 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.082 -10.100 -16.796 21.601 hybrid contribution -0.034 0.754 1.349 1.546 sum 9.048 -9.345 -15.448 20.195 Atomic orbital electron populations 1.21775 0.95692 1.02265 1.01295 1.21556 0.96115 0.94523 1.03102 1.21373 0.92948 0.98138 1.01042 1.21440 0.97522 0.91690 1.01808 1.21612 1.01539 1.00054 0.90334 1.21572 1.00842 0.98241 0.95877 1.21705 1.00816 1.01590 0.95870 1.21077 0.81933 0.92170 0.73915 1.90643 1.56491 1.47627 1.52078 1.45684 1.08283 1.08652 1.72652 1.19511 0.92182 0.84406 0.94414 0.92194 1.19853 0.95825 0.96494 0.92478 1.21488 0.95841 1.44470 0.93726 0.93809 1.25958 0.99162 0.95487 0.98657 1.70105 1.28006 1.51931 1.09364 0.85740 0.80688 0.78998 0.77650 1.19876 1.21056 1.16828 1.20125 0.95744 0.95866 0.97983 1.21091 0.94087 0.98780 0.99992 1.21451 0.96740 0.98539 0.96633 1.21510 0.99880 0.93304 0.99585 1.21380 0.93134 1.00391 0.98858 1.21173 0.98857 0.96862 0.98296 0.92706 0.90864 0.94351 0.89347 0.91741 0.95577 0.92054 0.88121 0.90254 0.87908 0.92146 0.95253 0.92463 0.90968 0.93109 0.75872 0.95433 0.96339 0.92872 0.85393 0.83144 0.83121 0.83954 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.91 71.99 0.71 -2.63 16 2 C -0.12 -2.62 5.69 30.60 0.17 -2.44 16 3 C -0.10 -3.07 3.82 30.60 0.12 -2.95 16 4 C -0.10 -3.12 2.50 -11.54 -0.03 -3.14 16 5 C -0.10 -2.08 4.80 30.59 0.15 -1.93 16 6 C -0.13 -3.06 5.33 30.59 0.16 -2.89 16 7 C -0.14 -2.55 9.91 71.98 0.71 -1.84 16 8 C 0.52 21.13 4.59 87.66 0.40 21.53 16 9 O -0.59 -30.32 14.32 -3.02 -0.04 -30.36 16 10 N -0.70 -25.99 4.64 -446.08 -2.07 -28.06 16 11 C 0.20 8.31 2.47 44.25 0.11 8.42 16 12 H 0.06 2.93 6.94 -2.39 -0.02 2.92 16 13 C -0.01 -0.40 3.71 29.85 0.11 -0.29 16 14 C -0.52 -30.97 9.31 25.60 0.24 -30.74 16 15 H 0.04 2.97 5.81 -2.91 -0.02 2.96 16 16 C 0.00 0.19 5.47 84.65 0.46 0.66 16 17 N -0.95 -62.50 13.96 21.45 0.30 -62.20 16 18 Si 0.95 45.88 27.38 68.60 1.88 47.76 16 19 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.24 -10.88 6.67 99.48 0.66 -10.21 16 22 C -0.10 -3.18 4.95 -19.87 -0.10 -3.28 16 23 C -0.12 -3.21 9.21 22.27 0.21 -3.01 16 24 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16 25 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 26 C -0.12 -2.80 10.05 22.27 0.22 -2.57 16 27 C -0.13 -4.06 9.67 22.27 0.22 -3.85 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.54 6.50 -2.39 -0.02 1.52 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.03 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.06 2.01 6.36 -2.39 -0.02 2.00 16 35 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.62 6.43 -2.39 -0.02 1.60 16 38 H 0.06 1.49 6.66 -2.39 -0.02 1.48 16 39 H 0.03 0.91 6.94 -2.39 -0.02 0.89 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.40 11.90 7.09 -92.71 -0.66 11.24 16 44 H 0.03 1.26 7.51 -2.39 -0.02 1.25 16 45 H 0.02 0.89 7.32 -2.39 -0.02 0.88 16 46 H 0.26 16.09 8.31 -92.70 -0.77 15.32 16 47 H 0.13 3.02 6.81 -2.91 -0.02 3.00 16 48 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 49 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 50 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 51 H 0.11 3.50 8.04 -2.91 -0.02 3.48 16 Total: -1.00 -80.15 398.94 4.58 -75.57 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.19 Total: 32.67 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 4.32 Total: -35.37 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -1.77 Total: -90.26 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.04 Total: -30.36 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.76 kcal Total: -80.15 4.58 -75.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410602255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.900 kcal (2) G-P(sol) polarization free energy of solvation -80.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds