Wall clock time and date at job start Tue Mar 31 2020 12:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47017 * 2 1 4 4 C 1.52999 * 109.47073 * 185.49836 * 3 2 1 5 5 C 1.53005 * 109.47080 * 303.28963 * 4 3 2 6 6 C 1.53008 * 109.46950 * 295.03323 * 5 4 3 7 7 C 1.53000 * 109.47097 * 185.10059 * 6 5 4 8 8 C 1.50703 * 109.47403 * 63.28606 * 4 3 2 9 9 O 1.21274 * 119.99890 * 240.00432 * 8 4 3 10 10 N 1.34770 * 119.99792 * 59.99874 * 8 4 3 11 11 C 1.46504 * 120.00238 * 175.38040 * 10 8 4 12 12 H 1.09003 * 109.46812 * 38.05786 * 11 10 8 13 13 C 1.53000 * 109.47201 * 278.05977 * 11 10 8 14 14 C 1.50695 * 109.47274 * 174.31310 * 13 11 10 15 15 H 1.08000 * 120.00008 * 354.94193 * 14 13 11 16 16 C 1.37879 * 120.00085 * 174.66125 * 14 13 11 17 17 N 1.31520 * 119.99876 * 180.28061 * 16 14 13 18 18 Si 1.86801 * 119.99852 * 0.27494 * 16 14 13 19 19 H 1.48502 * 109.46818 * 90.00276 * 18 16 14 20 20 H 1.48503 * 109.46799 * 210.00077 * 18 16 14 21 21 H 1.48494 * 109.47102 * 330.00237 * 18 16 14 22 22 C 1.50695 * 109.47335 * 158.05510 * 11 10 8 23 23 C 1.38238 * 119.99685 * 39.73102 * 22 11 10 24 24 C 1.38243 * 119.99373 * 179.78579 * 23 22 11 25 25 C 1.38228 * 120.00221 * 0.44461 * 24 23 22 26 26 C 1.38240 * 119.99871 * 359.80551 * 25 24 23 27 27 C 1.38229 * 120.00216 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.46808 * 60.00576 * 1 2 3 29 29 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47594 * 300.00542 * 1 2 3 31 31 H 1.08999 * 109.47083 * 239.99566 * 2 1 3 32 32 H 1.09002 * 109.46898 * 119.99970 * 2 1 3 33 33 H 1.09000 * 109.47114 * 65.49775 * 3 2 1 34 34 H 1.09000 * 109.46771 * 305.49610 * 3 2 1 35 35 H 1.08998 * 109.47208 * 183.28914 * 4 3 2 36 36 H 1.09002 * 109.46983 * 55.02934 * 5 4 3 37 37 H 1.08993 * 109.47316 * 175.03682 * 5 4 3 38 38 H 1.08998 * 109.46709 * 305.10008 * 6 5 4 39 39 H 1.09004 * 109.47108 * 65.09671 * 6 5 4 40 40 H 1.09002 * 109.46982 * 179.97438 * 7 6 5 41 41 H 1.08991 * 109.47024 * 299.99851 * 7 6 5 42 42 H 1.08999 * 109.46769 * 59.99844 * 7 6 5 43 43 H 0.97006 * 120.00376 * 355.38719 * 10 8 4 44 44 H 1.09002 * 109.46890 * 54.31141 * 13 11 10 45 45 H 1.09003 * 109.47232 * 294.31825 * 13 11 10 46 46 H 0.96998 * 119.99628 * 180.02562 * 17 16 14 47 47 H 1.07995 * 120.00213 * 359.97438 * 23 22 11 48 48 H 1.08003 * 119.99349 * 180.27507 * 24 23 22 49 49 H 1.08002 * 120.00210 * 179.83764 * 25 24 23 50 50 H 1.08004 * 119.99634 * 180.02562 * 26 25 24 51 51 H 1.07998 * 119.99895 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5637 1.4447 -0.1382 5 6 4.1794 0.6156 0.9907 6 6 3.8931 1.2905 2.3337 7 6 4.6149 0.5324 3.4496 8 6 3.9485 0.8476 -1.4673 9 8 4.6463 -0.1434 -1.5076 10 7 3.5170 1.4149 -2.6111 11 6 3.9725 0.8963 -3.9034 12 1 4.0385 -0.1907 -3.8557 13 6 5.3500 1.4771 -4.2291 14 6 5.8797 0.8385 -5.4871 15 1 5.3313 0.0358 -5.9574 16 6 7.0616 1.2829 -6.0408 17 7 7.5211 0.7292 -7.1418 18 14 8.0102 2.6714 -5.2274 19 1 8.9711 2.1061 -4.2464 20 1 8.7515 3.4368 -6.2618 21 1 7.0622 3.5749 -4.5275 22 6 2.9931 1.2934 -4.9775 23 6 2.4221 2.5523 -4.9611 24 6 1.5270 2.9181 -5.9491 25 6 1.1959 2.0220 -6.9481 26 6 1.7629 0.7613 -6.9615 27 6 2.6615 0.3970 -5.9762 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7593 1.9271 0.9351 34 1 1.5985 1.9839 -0.8367 35 1 3.9324 2.4688 -0.0796 36 1 3.7445 -0.3839 0.9863 37 1 5.2569 0.5437 0.8427 38 1 4.2482 2.3206 2.3057 39 1 2.8197 1.2812 2.5235 40 1 4.4113 1.0134 4.4063 41 1 4.2598 -0.4977 3.4776 42 1 5.6882 0.5417 3.2598 43 1 2.9048 2.1668 -2.5789 44 1 6.0334 1.2761 -3.4040 45 1 5.2649 2.5538 -4.3762 46 1 8.3528 1.0416 -7.5311 47 1 2.6776 3.2510 -4.1783 48 1 1.0843 3.9032 -5.9387 49 1 0.4946 2.3069 -7.7184 50 1 1.5045 0.0613 -7.7423 51 1 3.1041 -0.5880 -5.9865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410602260.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:07 Heat of formation + Delta-G solvation = -50.686605 kcal Electronic energy + Delta-G solvation = -27439.591205 eV Core-core repulsion = 23916.306643 eV Total energy + Delta-G solvation = -3523.284562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.07790 -38.79656 -36.67907 -35.10752 -33.86940 -32.73527 -31.42851 -30.54772 -30.29288 -29.05283 -26.36038 -25.34057 -23.70034 -22.34521 -22.18064 -21.86780 -20.89912 -19.61616 -19.09693 -17.30082 -16.74834 -16.02315 -15.90112 -15.60017 -15.02792 -14.67101 -14.57012 -14.12442 -14.00530 -13.91127 -13.54220 -13.37251 -13.25377 -12.96078 -12.82975 -12.66776 -12.35362 -12.24843 -12.06830 -11.93672 -11.65951 -11.65213 -11.35823 -11.05141 -10.99292 -10.83063 -10.78453 -10.65413 -10.63467 -10.50993 -10.34095 -10.11969 -9.79032 -9.38078 -9.12113 -8.57078 -8.52173 -8.44498 -8.09867 -6.01594 -3.98708 1.81245 1.86472 3.06486 3.32931 3.39381 3.41680 3.58834 4.27246 4.47431 4.59796 4.71377 4.81850 4.93908 5.00651 5.04871 5.18725 5.23852 5.26795 5.34260 5.35658 5.38205 5.47892 5.50916 5.52667 5.58594 5.64779 5.71379 5.80221 5.84681 5.88624 5.90783 5.96544 6.00251 6.06051 6.14390 6.16535 6.24093 6.25587 6.34673 6.42840 6.48688 6.56819 6.76914 6.85549 6.92440 7.04111 7.28654 7.32480 7.46694 7.77364 7.96418 8.52640 8.67889 9.01827 9.60450 11.11571 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010001 B = 0.004630 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.179360 B = 6046.509462 C = 8096.922374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.110 4.110 4 C -0.110 4.110 5 C -0.103 4.103 6 C -0.124 4.124 7 C -0.152 4.152 8 C 0.515 3.485 9 O -0.534 6.534 10 N -0.726 5.726 11 C 0.191 3.809 12 H 0.090 0.910 13 C -0.014 4.014 14 C -0.510 4.510 15 H 0.077 0.923 16 C 0.071 3.929 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.267 1.267 22 C -0.050 4.050 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.118 4.118 27 C -0.090 4.090 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.391 0.609 44 H 0.021 0.979 45 H 0.019 0.981 46 H 0.262 0.738 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.306 3.918 14.457 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.147 4.147 4 C -0.132 4.132 5 C -0.141 4.141 6 C -0.161 4.161 7 C -0.210 4.210 8 C 0.301 3.699 9 O -0.411 6.411 10 N -0.378 5.378 11 C 0.088 3.912 12 H 0.108 0.892 13 C -0.052 4.052 14 C -0.549 4.549 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.702 3.298 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.192 1.192 22 C -0.050 4.050 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.151 4.151 26 C -0.136 4.136 27 C -0.109 4.109 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.226 0.774 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.135 0.865 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.632 3.204 14.291 20.703 hybrid contribution 0.507 1.270 0.091 1.370 sum -14.125 4.474 14.382 20.649 Atomic orbital electron populations 1.21758 0.95919 1.01553 1.01530 1.21624 0.95634 0.96628 1.02769 1.21608 0.92952 0.97711 1.02475 1.21445 0.97198 1.01227 0.93319 1.21477 1.01678 0.99098 0.91836 1.21577 1.00464 0.99471 0.94635 1.21762 1.00781 1.00397 0.98018 1.20458 0.79900 0.84066 0.85464 1.90715 1.37569 1.25251 1.87521 1.46335 1.49140 1.35990 1.06299 1.20020 0.93379 0.99526 0.78256 0.89185 1.19924 0.90967 0.96418 0.97899 1.20942 1.07053 1.19460 1.07416 0.90544 1.24918 0.97104 0.96365 0.94612 1.69900 1.21587 1.42380 1.20140 0.86861 0.80425 0.83132 0.79346 1.20294 1.21422 1.19206 1.19826 0.94773 0.93850 0.96570 1.20799 0.98072 0.95880 0.99374 1.20948 0.98820 0.99001 0.95326 1.20990 1.01000 0.94300 0.98798 1.21064 0.97539 0.96579 0.98447 1.20992 0.96008 0.99862 0.93995 0.92758 0.92875 0.92978 0.91657 0.91484 0.90913 0.91674 0.88838 0.90878 0.91080 0.92175 0.91942 0.93031 0.92752 0.92660 0.77449 0.96105 0.96231 0.92797 0.86939 0.86778 0.86840 0.86501 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.13 -1.34 5.20 -26.73 -0.14 -1.48 16 3 C -0.11 -1.04 4.60 -26.73 -0.12 -1.16 16 4 C -0.11 -1.31 2.52 -91.77 -0.23 -1.54 16 5 C -0.10 -1.21 3.74 -26.72 -0.10 -1.31 16 6 C -0.12 -1.11 5.56 -26.73 -0.15 -1.26 16 7 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 8 C 0.52 8.50 5.85 -10.99 -0.06 8.44 16 9 O -0.53 -11.19 15.61 5.56 0.09 -11.11 16 10 N -0.73 -11.73 4.95 -54.93 -0.27 -12.00 16 11 C 0.19 3.83 2.19 -69.08 -0.15 3.68 16 12 H 0.09 2.00 7.47 -51.93 -0.39 1.61 16 13 C -0.01 -0.34 3.78 -27.89 -0.11 -0.44 16 14 C -0.51 -14.45 9.08 -34.44 -0.31 -14.77 16 15 H 0.08 2.28 7.02 -52.49 -0.37 1.92 16 16 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 18 Si 0.87 22.27 27.58 -169.99 -4.69 17.58 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.27 -6.53 6.39 56.52 0.36 -6.17 16 22 C -0.05 -0.91 4.50 -104.63 -0.47 -1.38 16 23 C -0.12 -1.97 9.03 -39.58 -0.36 -2.32 16 24 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 25 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 26 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 27 C -0.09 -1.65 8.82 -39.59 -0.35 -2.00 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.85 7.15 -51.93 -0.37 0.48 16 32 H 0.07 0.67 6.58 -51.93 -0.34 0.33 16 33 H 0.07 0.57 6.84 -51.93 -0.36 0.21 16 34 H 0.06 0.58 7.38 -51.93 -0.38 0.20 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.90 6.22 -51.93 -0.32 0.58 16 37 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.50 6.90 -51.93 -0.36 0.14 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.39 5.12 6.11 -40.82 -0.25 4.87 16 44 H 0.02 0.54 7.78 -51.93 -0.40 0.13 16 45 H 0.02 0.47 6.83 -51.93 -0.35 0.12 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.11 1.57 6.94 -52.49 -0.36 1.21 16 48 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 49 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 50 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 51 H 0.12 2.28 7.84 -52.49 -0.41 1.87 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -33.09 399.65 -10.10 -43.18 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.91 Total: 5.70 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -3.11 Total: -22.22 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.50 Total: -39.16 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.69 Total: 17.58 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.09 -10.10 -43.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410602260.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.503 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds