Wall clock time and date at job start Tue Mar 31 2020 12:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 C 1.52997 * 109.46974 * 120.00010 * 2 1 3 5 5 C 1.53005 * 109.47199 * 174.44525 * 4 2 1 6 6 C 1.52999 * 109.47080 * 177.58910 * 5 4 2 7 7 C 1.52991 * 109.47175 * 294.71977 * 6 5 4 8 8 C 1.53002 * 109.47233 * 174.81243 * 7 6 5 9 9 C 1.52997 * 109.47539 * 294.81163 * 7 6 5 10 10 C 1.50699 * 109.46607 * 297.59076 * 5 4 2 11 11 O 1.21284 * 119.99754 * 265.28716 * 10 5 4 12 12 N 1.34779 * 120.00407 * 85.29757 * 10 5 4 13 13 C 1.39119 * 120.00247 * 183.94170 * 12 10 5 14 14 C 1.38652 * 120.28159 * 330.12808 * 13 12 10 15 15 C 1.38224 * 120.02900 * 180.25929 * 14 13 12 16 16 C 1.38867 * 120.62111 * 359.74434 * 15 14 13 17 17 C 1.36469 * 120.57462 * 359.97438 * 16 15 14 18 18 C 1.40738 * 119.94146 * 0.02562 * 17 16 15 19 19 C 1.41069 * 120.30083 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00222 * 154.18382 * 19 18 17 21 21 C 1.39956 * 119.99976 * 334.18343 * 19 18 17 22 22 N 1.30857 * 120.00017 * 334.50715 * 21 19 18 23 23 Si 1.86799 * 120.00407 * 154.50650 * 21 19 18 24 24 H 1.48498 * 109.47251 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46985 * 300.00550 * 23 21 19 26 26 H 1.48500 * 109.46598 * 60.00242 * 23 21 19 27 27 H 1.08999 * 109.47623 * 300.00116 * 1 2 3 28 28 H 1.09003 * 109.47104 * 60.00326 * 1 2 3 29 29 H 1.08998 * 109.47422 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47152 * 239.99669 * 2 1 3 31 31 H 1.09000 * 109.47246 * 185.71592 * 3 2 1 32 32 H 1.09006 * 109.47109 * 305.71756 * 3 2 1 33 33 H 1.09004 * 109.46948 * 65.71252 * 3 2 1 34 34 H 1.08999 * 109.47570 * 54.44304 * 4 2 1 35 35 H 1.09005 * 109.47266 * 294.44261 * 4 2 1 36 36 H 1.08993 * 109.46865 * 57.58682 * 5 4 2 37 37 H 1.09004 * 109.47039 * 54.72268 * 6 5 4 38 38 H 1.08995 * 109.46842 * 174.71934 * 6 5 4 39 39 H 1.09007 * 109.47483 * 54.81388 * 7 6 5 40 40 H 1.08995 * 109.47113 * 59.99915 * 8 7 6 41 41 H 1.08996 * 109.47198 * 180.02562 * 8 7 6 42 42 H 1.09000 * 109.46790 * 299.99917 * 8 7 6 43 43 H 1.09002 * 109.46993 * 59.99983 * 9 7 6 44 44 H 1.08996 * 109.47819 * 180.02562 * 9 7 6 45 45 H 1.09003 * 109.47221 * 300.00172 * 9 7 6 46 46 H 0.97008 * 119.99374 * 3.93401 * 12 10 5 47 47 H 1.07994 * 119.98418 * 359.97438 * 14 13 12 48 48 H 1.08005 * 119.68776 * 179.76219 * 15 14 13 49 49 H 1.07994 * 119.71656 * 180.02562 * 16 15 14 50 50 H 1.07992 * 120.02701 * 180.02562 * 17 16 15 51 51 H 0.97008 * 119.99794 * 354.28137 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5636 -0.8433 1.1814 6 6 4.0791 -1.5107 2.4580 7 6 3.8050 -0.5996 3.6562 8 6 4.2020 -1.3202 4.9462 9 6 4.6234 0.6856 3.5174 10 6 3.9478 -1.6787 -0.0126 11 8 4.1429 -2.8686 0.1174 12 7 4.0749 -1.1034 -1.2248 13 6 4.3489 -1.8869 -2.3413 14 6 5.0763 -3.0600 -2.2107 15 6 5.3502 -3.8317 -3.3243 16 6 4.8985 -3.4471 -4.5799 17 6 4.1756 -2.3002 -4.7362 18 6 3.8830 -1.4964 -3.6186 19 6 3.1368 -0.3091 -3.7716 20 1 2.5641 0.0795 -2.9425 21 6 3.1385 0.3654 -4.9979 22 7 4.1508 0.2323 -5.8164 23 14 1.6959 1.4557 -5.4664 24 1 1.9397 2.0514 -6.8046 25 1 0.4536 0.6430 -5.5057 26 1 1.5473 2.5388 -4.4615 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1252 1.4442 -0.1024 32 1 1.5955 1.9850 -0.8344 33 1 1.7626 1.9259 0.9368 34 1 1.5977 -1.7162 1.3004 35 1 1.7601 -0.1532 2.1365 36 1 4.0037 0.1493 1.0871 37 1 3.5688 -2.4632 2.6016 38 1 5.1518 -1.6828 2.3703 39 1 2.7438 -0.3528 3.6898 40 1 5.2631 -1.5671 4.9127 41 1 4.0063 -0.6713 5.7998 42 1 3.6189 -2.2358 5.0451 43 1 4.3406 1.1990 2.5984 44 1 4.4286 1.3345 4.3712 45 1 5.6846 0.4388 3.4839 46 1 3.9752 -0.1431 -1.3187 47 1 5.4330 -3.3686 -1.2392 48 1 5.9206 -4.7425 -3.2168 49 1 5.1205 -4.0612 -5.4400 50 1 3.8284 -2.0097 -5.7167 51 1 4.9359 -0.2658 -5.5398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410828167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:10 Heat of formation + Delta-G solvation = -63.921715 kcal Electronic energy + Delta-G solvation = -28176.415528 eV Core-core repulsion = 24652.557049 eV Total energy + Delta-G solvation = -3523.858479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.15892 -37.97403 -36.74591 -35.70321 -33.91963 -33.68035 -31.44364 -29.33591 -28.47712 -27.30849 -27.01206 -26.23931 -25.16351 -23.70084 -21.46625 -20.86858 -20.23811 -19.59448 -18.94185 -17.95536 -16.73360 -16.19815 -15.51574 -15.18171 -14.76373 -14.37136 -14.21052 -14.13150 -14.06828 -13.69639 -13.49196 -13.17911 -12.88581 -12.53946 -12.44125 -12.29779 -12.23984 -12.11686 -11.97209 -11.84925 -11.64879 -11.48260 -11.40175 -11.03836 -10.95835 -10.80243 -10.72056 -10.66652 -10.45971 -10.41072 -10.30159 -10.25611 -10.19343 -9.62819 -9.28073 -9.00466 -8.70534 -7.59721 -7.36590 -6.90955 -4.45478 2.58945 2.81307 3.10649 3.22403 3.30965 3.40248 3.90595 3.96649 4.55385 4.65780 4.78637 4.86759 5.00886 5.02213 5.08603 5.29227 5.41236 5.43463 5.48564 5.51552 5.54910 5.62470 5.72181 5.77191 5.81215 5.88615 5.90773 5.95963 5.99804 6.01857 6.05218 6.10477 6.16373 6.22861 6.31106 6.36899 6.38732 6.43302 6.48735 6.50783 6.59089 6.85612 6.97851 7.17968 7.41725 7.54735 7.74145 7.80368 7.94251 8.04529 8.25234 8.40438 8.70427 8.80365 9.01914 10.01158 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.004778 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.116823 B = 5858.900806 C = 7395.124055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.147 4.147 4 C -0.100 4.100 5 C -0.107 4.107 6 C -0.094 4.094 7 C -0.099 4.099 8 C -0.146 4.146 9 C -0.151 4.151 10 C 0.502 3.498 11 O -0.542 6.542 12 N -0.635 5.635 13 C 0.009 3.991 14 C -0.081 4.081 15 C -0.240 4.240 16 C -0.095 4.095 17 C -0.207 4.207 18 C 0.090 3.910 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.043 3.957 22 N -0.796 5.796 23 Si 1.059 2.941 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.402 0.598 47 H 0.118 0.882 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.107 0.893 51 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 4.401 13.964 15.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.204 4.204 4 C -0.138 4.138 5 C -0.129 4.129 6 C -0.132 4.132 7 C -0.117 4.117 8 C -0.204 4.204 9 C -0.208 4.208 10 C 0.290 3.710 11 O -0.420 6.420 12 N -0.277 5.277 13 C -0.085 4.085 14 C -0.101 4.101 15 C -0.259 4.259 16 C -0.114 4.114 17 C -0.227 4.227 18 C 0.086 3.914 19 C -0.556 4.556 20 H 0.093 0.907 21 C -0.179 4.179 22 N -0.419 5.419 23 Si 0.882 3.118 24 H -0.199 1.199 25 H -0.200 1.200 26 H -0.201 1.201 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.238 0.762 47 H 0.135 0.865 48 H 0.109 0.891 49 H 0.107 0.893 50 H 0.125 0.875 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.796 4.535 12.818 14.117 hybrid contribution 0.597 -0.574 1.029 1.321 sum -3.198 3.961 13.847 14.753 Atomic orbital electron populations 1.21770 0.95215 1.01561 1.01405 1.21393 0.96106 0.96651 0.99325 1.21888 1.00874 0.96040 1.01635 1.21630 0.92611 1.01207 0.98336 1.21429 0.97832 0.99883 0.93714 1.21445 1.01519 0.98571 0.91694 1.21187 1.00327 0.95426 0.94753 1.21824 1.01525 1.00195 0.96811 1.21916 1.00154 0.97137 1.01579 1.20581 0.77686 0.88423 0.84352 1.90599 1.50587 1.15863 1.84994 1.43082 1.67908 1.10684 1.06039 1.17690 1.06817 0.97059 0.86910 1.20868 0.96710 0.94355 0.98178 1.20280 1.10677 1.02133 0.92849 1.20392 0.98618 0.96522 0.95821 1.20726 1.06781 0.96697 0.98536 1.17450 0.90656 0.93420 0.89878 1.20306 1.27156 1.07707 1.00387 0.90667 1.26894 1.00984 0.97681 0.92383 1.70462 1.04224 1.29453 1.37738 0.83724 0.74745 0.75985 0.77311 1.19874 1.20011 1.20083 0.93150 0.92511 0.92904 0.89367 0.92887 0.92263 0.92906 0.91519 0.90877 0.89169 0.90934 0.91719 0.90883 0.92758 0.92951 0.92712 0.92319 0.92985 0.92742 0.76192 0.86472 0.89143 0.89326 0.87497 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.19 37.16 0.34 -1.42 16 2 C -0.12 -1.59 2.52 -90.62 -0.23 -1.81 16 3 C -0.15 -1.79 8.68 37.16 0.32 -1.46 16 4 C -0.10 -1.27 3.99 -26.73 -0.11 -1.38 16 5 C -0.11 -1.48 1.91 -91.77 -0.18 -1.65 16 6 C -0.09 -1.20 3.59 -26.74 -0.10 -1.29 16 7 C -0.10 -0.97 2.79 -90.62 -0.25 -1.23 16 8 C -0.15 -1.32 9.19 37.16 0.34 -0.97 16 9 C -0.15 -1.39 8.96 37.16 0.33 -1.06 16 10 C 0.50 9.47 6.19 -10.99 -0.07 9.40 16 11 O -0.54 -12.02 13.35 5.55 0.07 -11.94 16 12 N -0.64 -12.88 3.67 -9.47 -0.03 -12.92 16 13 C 0.01 0.22 6.42 -83.17 -0.53 -0.32 16 14 C -0.08 -1.97 8.73 -39.43 -0.34 -2.31 16 15 C -0.24 -5.62 10.04 -39.35 -0.39 -6.02 16 16 C -0.09 -2.24 9.97 -39.99 -0.40 -2.63 16 17 C -0.21 -5.25 7.90 -39.28 -0.31 -5.56 16 18 C 0.09 2.29 5.30 -106.65 -0.57 1.72 16 19 C -0.53 -12.91 8.31 -37.87 -0.31 -13.23 16 20 H 0.08 1.74 6.71 -52.49 -0.35 1.39 16 21 C 0.04 1.03 4.93 -17.32 -0.09 0.95 16 22 N -0.80 -20.27 12.33 55.55 0.69 -19.58 16 23 Si 1.06 20.61 30.00 -169.99 -5.10 15.51 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 26 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.51 5.29 -51.93 -0.27 1.24 16 31 H 0.05 0.64 6.00 -51.93 -0.31 0.33 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 36 H 0.09 1.12 4.80 -51.93 -0.25 0.88 16 37 H 0.07 1.00 8.04 -51.93 -0.42 0.59 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.69 6.30 -51.93 -0.33 0.36 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.55 6.46 -51.93 -0.34 0.21 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.40 7.53 6.29 -40.82 -0.26 7.27 16 47 H 0.12 2.84 5.84 -52.49 -0.31 2.53 16 48 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 49 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 50 H 0.11 2.77 6.52 -52.49 -0.34 2.43 16 51 H 0.30 7.89 6.71 -40.82 -0.27 7.61 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -27.76 388.42 -9.55 -37.31 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -8.49 Total: 16.05 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: -2.54 Total: -30.28 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.65 Total: -32.50 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.07 Total: -11.94 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.10 Total: 15.51 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -27.76 -9.55 -37.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410828167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.612 kcal (2) G-P(sol) polarization free energy of solvation -27.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds