Wall clock time and date at job start Tue Mar 31 2020 12:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 C 1.52997 * 109.46974 * 120.00010 * 2 1 3 5 5 C 1.53005 * 109.47199 * 174.44525 * 4 2 1 6 6 C 1.52999 * 109.47080 * 177.58910 * 5 4 2 7 7 C 1.52991 * 109.47175 * 294.71977 * 6 5 4 8 8 C 1.53002 * 109.47233 * 174.81243 * 7 6 5 9 9 C 1.52997 * 109.47539 * 294.81163 * 7 6 5 10 10 C 1.50699 * 109.46607 * 297.59076 * 5 4 2 11 11 O 1.21284 * 119.99754 * 265.28716 * 10 5 4 12 12 N 1.34779 * 120.00407 * 85.29757 * 10 5 4 13 13 C 1.39119 * 120.00247 * 183.94170 * 12 10 5 14 14 C 1.38652 * 120.28159 * 330.12808 * 13 12 10 15 15 C 1.38224 * 120.02900 * 180.25929 * 14 13 12 16 16 C 1.38867 * 120.62111 * 359.74434 * 15 14 13 17 17 C 1.36469 * 120.57462 * 359.97438 * 16 15 14 18 18 C 1.40738 * 119.94146 * 0.02562 * 17 16 15 19 19 C 1.41069 * 120.30083 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00222 * 154.18382 * 19 18 17 21 21 C 1.39956 * 119.99976 * 334.18343 * 19 18 17 22 22 N 1.30857 * 120.00017 * 334.50715 * 21 19 18 23 23 Si 1.86799 * 120.00407 * 154.50650 * 21 19 18 24 24 H 1.48498 * 109.47251 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46985 * 300.00550 * 23 21 19 26 26 H 1.48500 * 109.46598 * 60.00242 * 23 21 19 27 27 H 1.08999 * 109.47623 * 300.00116 * 1 2 3 28 28 H 1.09003 * 109.47104 * 60.00326 * 1 2 3 29 29 H 1.08998 * 109.47422 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47152 * 239.99669 * 2 1 3 31 31 H 1.09000 * 109.47246 * 185.71592 * 3 2 1 32 32 H 1.09006 * 109.47109 * 305.71756 * 3 2 1 33 33 H 1.09004 * 109.46948 * 65.71252 * 3 2 1 34 34 H 1.08999 * 109.47570 * 54.44304 * 4 2 1 35 35 H 1.09005 * 109.47266 * 294.44261 * 4 2 1 36 36 H 1.08993 * 109.46865 * 57.58682 * 5 4 2 37 37 H 1.09004 * 109.47039 * 54.72268 * 6 5 4 38 38 H 1.08995 * 109.46842 * 174.71934 * 6 5 4 39 39 H 1.09007 * 109.47483 * 54.81388 * 7 6 5 40 40 H 1.08995 * 109.47113 * 59.99915 * 8 7 6 41 41 H 1.08996 * 109.47198 * 180.02562 * 8 7 6 42 42 H 1.09000 * 109.46790 * 299.99917 * 8 7 6 43 43 H 1.09002 * 109.46993 * 59.99983 * 9 7 6 44 44 H 1.08996 * 109.47819 * 180.02562 * 9 7 6 45 45 H 1.09003 * 109.47221 * 300.00172 * 9 7 6 46 46 H 0.97008 * 119.99374 * 3.93401 * 12 10 5 47 47 H 1.07994 * 119.98418 * 359.97438 * 14 13 12 48 48 H 1.08005 * 119.68776 * 179.76219 * 15 14 13 49 49 H 1.07994 * 119.71656 * 180.02562 * 16 15 14 50 50 H 1.07992 * 120.02701 * 180.02562 * 17 16 15 51 51 H 0.97008 * 119.99794 * 354.28137 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5636 -0.8433 1.1814 6 6 4.0791 -1.5107 2.4580 7 6 3.8050 -0.5996 3.6562 8 6 4.2020 -1.3202 4.9462 9 6 4.6234 0.6856 3.5174 10 6 3.9478 -1.6787 -0.0126 11 8 4.1429 -2.8686 0.1174 12 7 4.0749 -1.1034 -1.2248 13 6 4.3489 -1.8869 -2.3413 14 6 5.0763 -3.0600 -2.2107 15 6 5.3502 -3.8317 -3.3243 16 6 4.8985 -3.4471 -4.5799 17 6 4.1756 -2.3002 -4.7362 18 6 3.8830 -1.4964 -3.6186 19 6 3.1368 -0.3091 -3.7716 20 1 2.5641 0.0795 -2.9425 21 6 3.1385 0.3654 -4.9979 22 7 4.1508 0.2323 -5.8164 23 14 1.6959 1.4557 -5.4664 24 1 1.9397 2.0514 -6.8046 25 1 0.4536 0.6430 -5.5057 26 1 1.5473 2.5388 -4.4615 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1252 1.4442 -0.1024 32 1 1.5955 1.9850 -0.8344 33 1 1.7626 1.9259 0.9368 34 1 1.5977 -1.7162 1.3004 35 1 1.7601 -0.1532 2.1365 36 1 4.0037 0.1493 1.0871 37 1 3.5688 -2.4632 2.6016 38 1 5.1518 -1.6828 2.3703 39 1 2.7438 -0.3528 3.6898 40 1 5.2631 -1.5671 4.9127 41 1 4.0063 -0.6713 5.7998 42 1 3.6189 -2.2358 5.0451 43 1 4.3406 1.1990 2.5984 44 1 4.4286 1.3345 4.3712 45 1 5.6846 0.4388 3.4839 46 1 3.9752 -0.1431 -1.3187 47 1 5.4330 -3.3686 -1.2392 48 1 5.9206 -4.7425 -3.2168 49 1 5.1205 -4.0612 -5.4400 50 1 3.8284 -2.0097 -5.7167 51 1 4.9359 -0.2658 -5.5398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410828167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:09 Heat of formation + Delta-G solvation = -75.211807 kcal Electronic energy + Delta-G solvation = -28176.905104 eV Core-core repulsion = 24652.557049 eV Total energy + Delta-G solvation = -3524.348054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.67132 -39.57541 -38.12501 -36.68256 -35.76719 -35.37565 -32.53638 -31.23667 -30.24655 -28.10233 -27.88671 -27.22889 -27.01932 -25.05884 -23.20617 -22.52205 -21.28714 -20.99461 -20.16643 -19.77059 -18.19176 -17.86682 -16.80677 -16.61129 -16.12773 -15.97435 -15.66762 -15.42359 -15.10757 -14.96609 -14.66319 -14.53527 -14.35708 -14.19923 -13.83563 -13.57465 -13.43416 -13.24704 -13.06678 -12.94745 -12.91867 -12.68943 -12.52773 -12.47303 -12.41430 -12.14247 -11.97580 -11.83545 -11.74184 -11.63916 -11.44158 -11.36107 -11.27880 -11.22624 -10.99322 -10.79566 -10.37223 -9.54019 -9.27899 -8.76899 -6.38282 0.76994 0.91940 1.52047 1.64199 1.79337 1.79949 2.33261 2.41536 2.70858 3.55088 3.59398 3.73642 3.86164 4.05963 4.11942 4.14960 4.21063 4.35953 4.39574 4.43839 4.45783 4.56915 4.68390 4.70919 4.80326 4.84139 4.88134 4.91689 4.93423 4.96631 5.03133 5.05006 5.07796 5.08621 5.11931 5.16102 5.22430 5.31808 5.34576 5.38261 5.46309 5.48595 5.52378 5.55676 5.58697 5.68453 5.80589 5.95414 6.03811 6.14343 6.36587 6.65481 6.89389 6.93663 7.38883 8.07013 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.004778 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.116823 B = 5858.900806 C = 7395.124055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C -0.145 4.145 4 C -0.092 4.092 5 C -0.095 4.095 6 C -0.090 4.090 7 C -0.091 4.091 8 C -0.146 4.146 9 C -0.151 4.151 10 C 0.499 3.501 11 O -0.578 6.578 12 N -0.633 5.633 13 C 0.005 3.995 14 C -0.099 4.099 15 C -0.242 4.242 16 C -0.099 4.099 17 C -0.227 4.227 18 C 0.065 3.935 19 C -0.540 4.540 20 H 0.083 0.917 21 C 0.010 3.990 22 N -0.815 5.815 23 Si 1.106 2.894 24 H -0.276 1.276 25 H -0.270 1.270 26 H -0.248 1.248 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.409 0.591 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.094 0.906 51 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 6.278 16.023 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.203 4.203 4 C -0.130 4.130 5 C -0.116 4.116 6 C -0.128 4.128 7 C -0.110 4.110 8 C -0.204 4.204 9 C -0.209 4.209 10 C 0.289 3.711 11 O -0.459 6.459 12 N -0.276 5.276 13 C -0.090 4.090 14 C -0.119 4.119 15 C -0.262 4.262 16 C -0.118 4.118 17 C -0.247 4.247 18 C 0.061 3.939 19 C -0.568 4.568 20 H 0.101 0.899 21 C -0.207 4.207 22 N -0.438 5.438 23 Si 0.923 3.077 24 H -0.201 1.201 25 H -0.195 1.195 26 H -0.172 1.172 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.246 0.754 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.131 0.869 50 H 0.112 0.888 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.040 6.419 14.906 16.994 hybrid contribution 1.034 -1.260 0.433 1.687 sum -4.006 5.159 15.339 16.672 Atomic orbital electron populations 1.21758 0.94204 1.01322 1.02492 1.21354 0.97030 0.97381 0.97864 1.21885 1.00569 0.94875 1.02934 1.21623 0.91111 1.00883 0.99383 1.21471 0.98986 0.99693 0.91458 1.21428 1.00296 0.98643 0.92456 1.21153 1.01245 0.95080 0.93478 1.21826 1.01180 1.00421 0.96940 1.21930 0.99647 0.96875 1.02402 1.21569 0.76088 0.88512 0.84937 1.90571 1.51959 1.17787 1.85536 1.43126 1.67986 1.10744 1.05701 1.17893 1.05957 0.97303 0.87854 1.21032 0.97463 0.94987 0.98437 1.20589 1.10309 1.02743 0.92515 1.20635 0.98043 0.96280 0.96854 1.20763 1.08081 0.97740 0.98121 1.17768 0.91416 0.94247 0.90504 1.20499 1.27320 1.07695 1.01243 0.89856 1.28231 1.02274 0.98149 0.92019 1.70573 1.04510 1.30550 1.38215 0.83146 0.71754 0.75181 0.77572 1.20094 1.19474 1.17202 0.90523 0.92948 0.93852 0.93440 0.93193 0.92859 0.90088 0.93067 0.87393 0.87222 0.92491 0.93164 0.89584 0.93274 0.91248 0.92951 0.92218 0.91283 0.93362 0.75404 0.86740 0.86829 0.86859 0.88797 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.19 71.98 0.66 -2.54 16 2 C -0.12 -3.02 2.52 -10.79 -0.03 -3.04 16 3 C -0.15 -3.13 8.68 71.98 0.62 -2.51 16 4 C -0.09 -2.15 3.99 30.59 0.12 -2.03 16 5 C -0.10 -2.51 1.91 -11.54 -0.02 -2.53 16 6 C -0.09 -2.19 3.59 30.59 0.11 -2.08 16 7 C -0.09 -1.55 2.79 -10.80 -0.03 -1.58 16 8 C -0.15 -2.29 9.19 71.98 0.66 -1.63 16 9 C -0.15 -2.32 8.96 71.98 0.64 -1.68 16 10 C 0.50 19.04 6.19 87.66 0.54 19.58 16 11 O -0.58 -26.32 13.35 -3.04 -0.04 -26.36 16 12 N -0.63 -26.16 3.67 -302.28 -1.11 -27.27 16 13 C 0.00 0.23 6.42 38.88 0.25 0.48 16 14 C -0.10 -4.91 8.73 22.37 0.20 -4.72 16 15 C -0.24 -11.44 10.04 22.42 0.22 -11.21 16 16 C -0.10 -4.75 9.97 22.01 0.22 -4.53 16 17 C -0.23 -11.85 7.90 22.47 0.18 -11.68 16 18 C 0.06 3.39 5.30 -21.18 -0.11 3.28 16 19 C -0.54 -26.87 8.31 23.38 0.19 -26.67 16 20 H 0.08 3.91 6.71 -2.91 -0.02 3.89 16 21 C 0.01 0.51 4.93 85.25 0.42 0.93 16 22 N -0.82 -42.44 12.33 21.83 0.27 -42.17 16 23 Si 1.11 40.86 30.00 68.60 2.06 42.92 16 24 H -0.28 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 26 H -0.25 -8.06 7.11 99.48 0.71 -7.35 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.62 5.29 -2.39 -0.01 1.61 16 31 H 0.05 1.09 6.00 -2.39 -0.01 1.08 16 32 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 1.81 6.36 -2.38 -0.02 1.80 16 36 H 0.11 2.50 4.80 -2.39 -0.01 2.49 16 37 H 0.06 1.56 8.04 -2.38 -0.02 1.54 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.27 6.30 -2.38 -0.02 1.25 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.90 6.46 -2.39 -0.02 0.89 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.41 15.47 6.29 -92.70 -0.58 14.89 16 47 H 0.11 5.71 5.84 -2.91 -0.02 5.69 16 48 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 49 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 50 H 0.09 5.06 6.52 -2.91 -0.02 5.04 16 51 H 0.28 15.54 6.71 -92.70 -0.62 14.92 16 Total: -1.00 -62.19 388.42 6.51 -55.68 By element: Atomic # 1 Polarization: 50.90 SS G_CDS: 0.48 Total: 51.38 kcal Atomic # 6 Polarization: -59.03 SS G_CDS: 4.86 Total: -54.17 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -0.84 Total: -69.44 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.04 Total: -26.36 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.06 Total: 42.92 kcal Total: -62.19 6.51 -55.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410828167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.536 kcal (2) G-P(sol) polarization free energy of solvation -62.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds